Wall clock time and date at job start Tue Mar 31 2020 06:13:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09002 * 109.46906 * 55.00224 * 3 2 1 5 5 C 1.50699 * 109.47482 * 174.99860 * 3 2 1 6 6 H 1.08000 * 120.00147 * 120.00321 * 5 3 2 7 7 C 1.37878 * 120.00379 * 300.00215 * 5 3 2 8 8 N 1.31518 * 119.99761 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 120.00461 * 179.97438 * 7 5 3 10 10 H 1.48495 * 109.46941 * 59.99620 * 9 7 5 11 11 H 1.48492 * 109.47261 * 180.02562 * 9 7 5 12 12 H 1.48506 * 109.46544 * 300.00112 * 9 7 5 13 13 N 1.46497 * 109.47408 * 295.00294 * 3 2 1 14 14 C 1.34775 * 120.00077 * 84.99397 * 13 3 2 15 15 O 1.21281 * 120.00210 * 0.02562 * 14 13 3 16 16 C 1.50707 * 119.99886 * 180.02562 * 14 13 3 17 17 H 1.09001 * 109.46827 * 304.99514 * 16 14 13 18 18 C 1.52993 * 109.47229 * 64.99848 * 16 14 13 19 19 O 1.42901 * 109.47059 * 185.00044 * 16 14 13 20 20 C 1.42898 * 114.00095 * 149.99503 * 19 16 14 21 21 C 1.50693 * 109.47221 * 180.02562 * 20 19 16 22 22 C 1.38237 * 119.99992 * 269.72906 * 21 20 19 23 23 C 1.38240 * 119.99956 * 179.76771 * 22 21 20 24 24 C 1.38236 * 119.99992 * 0.50615 * 23 22 21 25 25 C 1.38239 * 119.99868 * 359.74496 * 24 23 22 26 26 C 1.38236 * 120.00093 * 90.00293 * 21 20 19 27 27 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 28 28 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 29 29 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 31 31 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 32 32 H 0.96999 * 120.00301 * 180.02562 * 8 7 5 33 33 H 0.97001 * 120.00250 * 264.99821 * 13 3 2 34 34 H 1.09000 * 109.47035 * 179.97438 * 18 16 14 35 35 H 1.08999 * 109.47526 * 300.00375 * 18 16 14 36 36 H 1.09001 * 109.47017 * 60.00318 * 18 16 14 37 37 H 1.09001 * 109.47460 * 300.00347 * 20 19 16 38 38 H 1.08997 * 109.46783 * 59.99943 * 20 19 16 39 39 H 1.07998 * 120.00042 * 359.97438 * 22 21 20 40 40 H 1.08004 * 119.99976 * 180.23166 * 23 22 21 41 41 H 1.07999 * 119.99983 * 179.72588 * 24 23 22 42 42 H 1.07994 * 119.99443 * 179.97438 * 25 24 23 43 43 H 1.07989 * 119.99952 * 0.02562 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9814 0.8419 5 6 3.5419 1.4442 0.1239 6 1 4.1473 1.8888 -0.6522 7 6 4.1434 0.8783 1.2280 8 7 3.4063 0.3373 2.1733 9 14 6.0050 0.8799 1.3812 10 1 6.5005 2.2797 1.3808 11 1 6.3979 0.2155 2.6498 12 1 6.5966 0.1451 0.2342 13 7 1.6525 2.0975 -1.2517 14 6 0.4352 2.6644 -1.3669 15 8 -0.3392 2.6326 -0.4340 16 6 0.0363 3.3378 -2.6548 17 1 0.7772 4.0942 -2.9138 18 6 -0.0410 2.2958 -3.7724 19 8 -1.2408 3.9579 -2.4924 20 6 -1.4285 5.1221 -3.2995 21 6 -2.8011 5.6912 -3.0487 22 6 -3.8727 5.2754 -3.8168 23 6 -5.1327 5.7939 -3.5836 24 6 -5.3194 6.7359 -2.5893 25 6 -4.2469 7.1556 -1.8247 26 6 -2.9878 6.6332 -2.0545 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5139 0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 3.8293 -0.0605 2.9503 33 1 2.2720 2.1232 -1.9977 34 1 -0.3299 2.7828 -4.7038 35 1 0.9332 1.8228 -3.8962 36 1 -0.7818 1.5394 -3.5133 37 1 -0.6746 5.8667 -3.0440 38 1 -1.3325 4.8541 -4.3516 39 1 -3.7260 4.5429 -4.5968 40 1 -5.9706 5.4662 -4.1812 41 1 -6.3030 7.1443 -2.4101 42 1 -4.3926 7.8919 -1.0482 43 1 -2.1498 6.9617 -1.4577 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000346468602.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:29 Heat of formation + Delta-G solvation = -66.967841 kcal Electronic energy + Delta-G solvation = -23038.000073 eV Core-core repulsion = 19661.940169 eV Total energy + Delta-G solvation = -3376.059904 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.66214 -39.09827 -37.30512 -34.91790 -32.79180 -32.20738 -31.17762 -31.01010 -30.14080 -26.91526 -26.22983 -24.00170 -22.78835 -22.68122 -21.42885 -20.22656 -19.26826 -17.49074 -17.05011 -16.56918 -15.84217 -15.72698 -15.18727 -15.10258 -14.82451 -14.32848 -14.02981 -13.60672 -13.50804 -13.04817 -12.95039 -12.67143 -12.60567 -12.42048 -12.09103 -11.75325 -11.54105 -11.29118 -11.20894 -11.10496 -11.00082 -10.89568 -10.80667 -10.30726 -10.14905 -9.75349 -9.58388 -9.04586 -9.02186 -8.97655 -8.72319 -8.47525 -7.79229 -6.11313 -4.21073 1.15155 1.30134 3.25356 3.29622 3.31269 3.34841 3.42198 3.85148 4.29359 4.44510 4.69207 4.78072 4.89020 4.98146 5.03286 5.13245 5.19438 5.23642 5.27602 5.40282 5.44232 5.53551 5.68231 5.81827 5.84897 5.92782 6.18178 6.32392 6.38140 6.43015 6.49914 6.50484 6.70295 6.86764 7.07386 7.13275 7.26796 7.40428 7.48265 7.63784 7.76428 7.92341 8.19917 8.68550 8.79681 9.17371 9.46417 10.93928 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.027522 B = 0.003051 C = 0.003030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.132320 B = 9174.830926 C = 9239.899807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.127 4.127 3 C 0.272 3.728 4 H 0.049 0.951 5 C -0.535 4.535 6 H 0.060 0.940 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.901 3.099 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.707 5.707 14 C 0.502 3.498 15 O -0.527 6.527 16 C 0.066 3.934 17 H 0.079 0.921 18 C -0.167 4.167 19 O -0.348 6.348 20 C 0.098 3.902 21 C -0.085 4.085 22 C -0.099 4.099 23 C -0.126 4.126 24 C -0.117 4.117 25 C -0.124 4.124 26 C -0.095 4.095 27 H 0.039 0.961 28 H 0.049 0.951 29 H 0.022 0.978 30 H 0.099 0.901 31 H 0.031 0.969 32 H 0.265 0.735 33 H 0.387 0.613 34 H 0.061 0.939 35 H 0.073 0.927 36 H 0.069 0.931 37 H 0.058 0.942 38 H 0.057 0.943 39 H 0.122 0.878 40 H 0.122 0.878 41 H 0.121 0.879 42 H 0.123 0.877 43 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.855 10.007 -13.783 20.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.166 4.166 3 C 0.171 3.829 4 H 0.067 0.933 5 C -0.573 4.573 6 H 0.078 0.922 7 C -0.137 4.137 8 N -0.519 5.519 9 Si 0.729 3.271 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.357 5.357 14 C 0.285 3.715 15 O -0.403 6.403 16 C 0.005 3.995 17 H 0.097 0.903 18 C -0.225 4.225 19 O -0.266 6.266 20 C 0.022 3.978 21 C -0.085 4.085 22 C -0.117 4.117 23 C -0.144 4.144 24 C -0.135 4.135 25 C -0.142 4.142 26 C -0.113 4.113 27 H 0.058 0.942 28 H 0.068 0.932 29 H 0.041 0.959 30 H 0.117 0.883 31 H 0.050 0.950 32 H 0.075 0.925 33 H 0.219 0.781 34 H 0.080 0.920 35 H 0.092 0.908 36 H 0.088 0.912 37 H 0.076 0.924 38 H 0.075 0.925 39 H 0.140 0.860 40 H 0.140 0.860 41 H 0.139 0.861 42 H 0.141 0.859 43 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -11.537 9.803 -12.760 19.799 hybrid contribution 1.484 0.033 -0.429 1.545 sum -10.053 9.836 -13.188 19.280 Atomic orbital electron populations 1.21846 0.98300 0.98024 1.01350 1.21931 0.92626 0.99792 1.02230 1.18774 0.94099 0.89158 0.80887 0.93338 1.21191 0.90695 1.39134 1.06306 0.92158 1.24888 0.98566 0.94825 0.95392 1.69889 1.35208 1.37502 1.09302 0.86517 0.84895 0.78281 0.77447 1.20211 1.21140 1.20181 1.46438 1.14265 1.56409 1.18606 1.20061 0.83030 0.79977 0.88419 1.90693 1.51112 1.58544 1.39965 1.22047 0.86707 0.95693 0.95076 0.90284 1.22200 1.03506 0.99436 0.97389 1.88154 1.32666 1.41105 1.64670 1.21395 0.93707 0.87919 0.94794 1.19598 0.94672 0.97217 0.97047 1.21061 0.92344 0.98805 0.99465 1.21125 0.97006 0.97702 0.98570 1.21180 0.98813 0.97584 0.95962 1.21155 0.92813 1.00475 0.99760 1.21123 0.97646 0.96281 0.96266 0.94198 0.93179 0.95880 0.88325 0.95048 0.92495 0.78103 0.91964 0.90800 0.91208 0.92410 0.92500 0.85982 0.86029 0.86143 0.85928 0.85787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.17 8.52 37.16 0.32 -2.85 16 2 C -0.13 -3.11 5.45 -26.74 -0.15 -3.25 16 3 C 0.27 6.85 2.24 -69.09 -0.15 6.70 16 4 H 0.05 1.43 7.58 -51.93 -0.39 1.03 16 5 C -0.53 -14.01 8.73 -34.44 -0.30 -14.31 16 6 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 7 C 0.07 1.78 5.29 -17.82 -0.09 1.69 16 8 N -0.88 -24.73 11.29 55.43 0.63 -24.10 16 9 Si 0.90 20.49 29.54 -169.99 -5.02 15.47 16 10 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 11 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 12 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 13 N -0.71 -14.53 4.98 -54.94 -0.27 -14.80 16 14 C 0.50 10.19 5.75 -10.98 -0.06 10.12 16 15 O -0.53 -13.03 13.65 -14.30 -0.20 -13.22 16 16 C 0.07 1.01 3.13 -27.88 -0.09 0.92 16 17 H 0.08 1.00 7.79 -51.93 -0.40 0.59 16 18 C -0.17 -2.07 9.48 37.15 0.35 -1.72 16 19 O -0.35 -5.69 9.51 -55.09 -0.52 -6.22 16 20 C 0.10 1.20 5.87 36.00 0.21 1.41 16 21 C -0.09 -1.06 5.51 -104.63 -0.58 -1.63 16 22 C -0.10 -1.10 9.70 -39.58 -0.38 -1.48 16 23 C -0.13 -1.25 10.05 -39.58 -0.40 -1.65 16 24 C -0.12 -1.14 10.05 -39.58 -0.40 -1.54 16 25 C -0.12 -1.31 10.05 -39.58 -0.40 -1.70 16 26 C -0.10 -1.14 9.70 -39.58 -0.38 -1.53 16 27 H 0.04 0.90 5.65 -51.93 -0.29 0.60 16 28 H 0.05 1.23 7.85 -51.93 -0.41 0.83 16 29 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.10 2.67 5.95 -51.93 -0.31 2.36 16 31 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 33 H 0.39 6.76 8.32 -40.82 -0.34 6.42 16 34 H 0.06 0.61 7.87 -51.93 -0.41 0.20 16 35 H 0.07 0.83 7.92 -51.93 -0.41 0.42 16 36 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 37 H 0.06 0.63 8.03 -51.93 -0.42 0.22 16 38 H 0.06 0.56 7.81 -51.93 -0.41 0.15 16 39 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 40 H 0.12 0.92 8.06 -52.48 -0.42 0.49 16 41 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 42 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 43 H 0.12 1.40 8.06 -52.49 -0.42 0.97 16 LS Contribution 355.33 15.07 5.35 5.35 Total: -1.00 -31.99 355.33 -9.25 -41.24 By element: Atomic # 1 Polarization: 13.83 SS G_CDS: -6.71 Total: 7.12 kcal Atomic # 6 Polarization: -8.34 SS G_CDS: -2.50 Total: -10.84 kcal Atomic # 7 Polarization: -39.26 SS G_CDS: 0.35 Total: -38.90 kcal Atomic # 8 Polarization: -18.72 SS G_CDS: -0.72 Total: -19.44 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -31.99 -9.25 -41.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346468602.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.729 kcal (2) G-P(sol) polarization free energy of solvation -31.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds