Wall clock time and date at job start Tue Mar 31 2020 06:13:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09002 * 109.46906 * 55.00224 * 3 2 1 5 5 C 1.50699 * 109.47482 * 174.99860 * 3 2 1 6 6 H 1.08000 * 120.00147 * 120.00321 * 5 3 2 7 7 C 1.37878 * 120.00379 * 300.00215 * 5 3 2 8 8 N 1.31518 * 119.99761 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 120.00461 * 179.97438 * 7 5 3 10 10 H 1.48495 * 109.46941 * 59.99620 * 9 7 5 11 11 H 1.48492 * 109.47261 * 180.02562 * 9 7 5 12 12 H 1.48506 * 109.46544 * 300.00112 * 9 7 5 13 13 N 1.46497 * 109.47408 * 295.00294 * 3 2 1 14 14 C 1.34775 * 120.00077 * 84.99397 * 13 3 2 15 15 O 1.21281 * 120.00210 * 0.02562 * 14 13 3 16 16 C 1.50707 * 119.99886 * 180.02562 * 14 13 3 17 17 H 1.09001 * 109.46827 * 304.99514 * 16 14 13 18 18 C 1.52993 * 109.47229 * 64.99848 * 16 14 13 19 19 O 1.42901 * 109.47059 * 185.00044 * 16 14 13 20 20 C 1.42898 * 114.00095 * 149.99503 * 19 16 14 21 21 C 1.50693 * 109.47221 * 180.02562 * 20 19 16 22 22 C 1.38237 * 119.99992 * 269.72906 * 21 20 19 23 23 C 1.38240 * 119.99956 * 179.76771 * 22 21 20 24 24 C 1.38236 * 119.99992 * 0.50615 * 23 22 21 25 25 C 1.38239 * 119.99868 * 359.74496 * 24 23 22 26 26 C 1.38236 * 120.00093 * 90.00293 * 21 20 19 27 27 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 28 28 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 29 29 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 31 31 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 32 32 H 0.96999 * 120.00301 * 180.02562 * 8 7 5 33 33 H 0.97001 * 120.00250 * 264.99821 * 13 3 2 34 34 H 1.09000 * 109.47035 * 179.97438 * 18 16 14 35 35 H 1.08999 * 109.47526 * 300.00375 * 18 16 14 36 36 H 1.09001 * 109.47017 * 60.00318 * 18 16 14 37 37 H 1.09001 * 109.47460 * 300.00347 * 20 19 16 38 38 H 1.08997 * 109.46783 * 59.99943 * 20 19 16 39 39 H 1.07998 * 120.00042 * 359.97438 * 22 21 20 40 40 H 1.08004 * 119.99976 * 180.23166 * 23 22 21 41 41 H 1.07999 * 119.99983 * 179.72588 * 24 23 22 42 42 H 1.07994 * 119.99443 * 179.97438 * 25 24 23 43 43 H 1.07989 * 119.99952 * 0.02562 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9814 0.8419 5 6 3.5419 1.4442 0.1239 6 1 4.1473 1.8888 -0.6522 7 6 4.1434 0.8783 1.2280 8 7 3.4063 0.3373 2.1733 9 14 6.0050 0.8799 1.3812 10 1 6.5005 2.2797 1.3808 11 1 6.3979 0.2155 2.6498 12 1 6.5966 0.1451 0.2342 13 7 1.6525 2.0975 -1.2517 14 6 0.4352 2.6644 -1.3669 15 8 -0.3392 2.6326 -0.4340 16 6 0.0363 3.3378 -2.6548 17 1 0.7772 4.0942 -2.9138 18 6 -0.0410 2.2958 -3.7724 19 8 -1.2408 3.9579 -2.4924 20 6 -1.4285 5.1221 -3.2995 21 6 -2.8011 5.6912 -3.0487 22 6 -3.8727 5.2754 -3.8168 23 6 -5.1327 5.7939 -3.5836 24 6 -5.3194 6.7359 -2.5893 25 6 -4.2469 7.1556 -1.8247 26 6 -2.9878 6.6332 -2.0545 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5139 0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 3.8293 -0.0605 2.9503 33 1 2.2720 2.1232 -1.9977 34 1 -0.3299 2.7828 -4.7038 35 1 0.9332 1.8228 -3.8962 36 1 -0.7818 1.5394 -3.5133 37 1 -0.6746 5.8667 -3.0440 38 1 -1.3325 4.8541 -4.3516 39 1 -3.7260 4.5429 -4.5968 40 1 -5.9706 5.4662 -4.1812 41 1 -6.3030 7.1443 -2.4101 42 1 -4.3926 7.8919 -1.0482 43 1 -2.1498 6.9617 -1.4577 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000346468602.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:29 Heat of formation + Delta-G solvation = -85.950872 kcal Electronic energy + Delta-G solvation = -23038.823239 eV Core-core repulsion = 19661.940169 eV Total energy + Delta-G solvation = -3376.883070 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.99731 -40.16638 -38.54991 -36.79978 -34.42551 -33.57533 -32.72241 -31.79626 -31.44958 -28.85457 -27.13057 -25.50627 -24.52844 -23.48190 -22.25900 -21.97408 -21.05448 -19.06825 -18.19171 -17.71914 -17.36007 -16.94310 -16.72534 -16.27153 -16.16548 -15.90767 -15.25887 -14.96716 -14.58053 -14.30301 -14.24029 -14.05122 -13.79974 -13.50396 -13.36455 -13.22583 -13.15122 -12.95759 -12.88554 -12.64238 -12.38262 -12.15504 -12.04566 -11.92016 -11.81155 -11.58381 -11.06141 -10.89632 -10.54311 -10.28926 -9.82599 -9.75893 -9.62717 -8.14825 -6.32726 0.32474 0.49560 1.45740 1.47707 1.55450 1.83851 2.14753 2.44168 2.83123 3.14280 3.26843 3.80071 3.89611 3.96464 4.03642 4.13790 4.17076 4.28497 4.36029 4.39869 4.48510 4.56392 4.64147 4.73970 4.75027 4.76366 4.84550 5.06229 5.07186 5.14864 5.22225 5.25784 5.44025 5.54022 5.56256 5.59797 5.63068 5.66861 5.79405 5.90992 6.09158 6.16290 6.19001 6.75439 7.01600 7.34722 7.60971 8.90443 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.027522 B = 0.003051 C = 0.003030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.132320 B = 9174.830926 C = 9239.899807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.119 4.119 3 C 0.280 3.720 4 H -0.007 1.007 5 C -0.548 4.548 6 H 0.075 0.925 7 C 0.014 3.986 8 N -0.916 5.916 9 Si 0.971 3.029 10 H -0.271 1.271 11 H -0.288 1.288 12 H -0.263 1.263 13 N -0.700 5.700 14 C 0.495 3.505 15 O -0.579 6.579 16 C 0.075 3.925 17 H 0.111 0.889 18 C -0.161 4.161 19 O -0.381 6.381 20 C 0.096 3.904 21 C -0.109 4.109 22 C -0.110 4.110 23 C -0.131 4.131 24 C -0.121 4.121 25 C -0.135 4.135 26 C -0.119 4.119 27 H 0.042 0.958 28 H 0.020 0.980 29 H 0.045 0.955 30 H 0.071 0.929 31 H 0.045 0.955 32 H 0.265 0.735 33 H 0.405 0.595 34 H 0.095 0.905 35 H 0.087 0.913 36 H 0.050 0.950 37 H 0.065 0.935 38 H 0.085 0.915 39 H 0.137 0.863 40 H 0.147 0.853 41 H 0.147 0.853 42 H 0.139 0.861 43 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.529 10.473 -16.448 22.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.158 4.158 3 C 0.176 3.824 4 H 0.011 0.989 5 C -0.586 4.586 6 H 0.093 0.907 7 C -0.186 4.186 8 N -0.555 5.555 9 Si 0.796 3.204 10 H -0.196 1.196 11 H -0.214 1.214 12 H -0.187 1.187 13 N -0.351 5.351 14 C 0.281 3.719 15 O -0.459 6.459 16 C 0.015 3.985 17 H 0.128 0.872 18 C -0.218 4.218 19 O -0.301 6.301 20 C 0.020 3.980 21 C -0.109 4.109 22 C -0.128 4.128 23 C -0.148 4.148 24 C -0.139 4.139 25 C -0.152 4.152 26 C -0.137 4.137 27 H 0.061 0.939 28 H 0.040 0.960 29 H 0.065 0.935 30 H 0.089 0.911 31 H 0.063 0.937 32 H 0.074 0.926 33 H 0.240 0.760 34 H 0.114 0.886 35 H 0.106 0.894 36 H 0.069 0.931 37 H 0.083 0.917 38 H 0.103 0.897 39 H 0.155 0.845 40 H 0.165 0.835 41 H 0.164 0.836 42 H 0.157 0.843 43 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -11.198 10.286 -15.482 21.700 hybrid contribution 1.280 -0.047 0.420 1.348 sum -9.918 10.239 -15.061 20.738 Atomic orbital electron populations 1.21679 0.97287 0.99033 1.00072 1.21775 0.93406 0.99230 1.01425 1.18348 0.93679 0.89089 0.81257 0.98861 1.21554 0.91262 1.38975 1.06794 0.90734 1.25799 1.03387 0.94383 0.95015 1.70056 1.37202 1.38356 1.09857 0.85411 0.79000 0.78446 0.77552 1.19642 1.21389 1.18735 1.46167 1.15109 1.56162 1.17663 1.21092 0.81967 0.79043 0.89827 1.90670 1.52486 1.60379 1.42375 1.22002 0.87368 0.96853 0.92321 0.87172 1.22193 1.03859 0.98345 0.97421 1.88113 1.32996 1.42679 1.66281 1.21607 0.93954 0.86764 0.95679 1.19809 0.95396 0.97860 0.97843 1.21337 0.92530 0.99155 0.99745 1.21505 0.97423 0.97259 0.98648 1.21557 0.99715 0.97211 0.95381 1.21446 0.92604 1.00810 1.00377 1.21306 0.98400 0.97204 0.96838 0.93852 0.96046 0.93550 0.91053 0.93672 0.92632 0.75978 0.88575 0.89420 0.93060 0.91691 0.89704 0.84527 0.83509 0.83566 0.84325 0.86245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.80 8.52 71.98 0.61 -5.18 16 2 C -0.12 -5.96 5.45 30.59 0.17 -5.80 16 3 C 0.28 14.45 2.24 44.24 0.10 14.55 16 4 H -0.01 -0.41 7.58 -2.39 -0.02 -0.42 16 5 C -0.55 -28.76 8.73 25.60 0.22 -28.54 16 6 H 0.07 3.61 7.74 -2.91 -0.02 3.58 16 7 C 0.01 0.76 5.29 84.65 0.45 1.21 16 8 N -0.92 -52.81 11.29 21.45 0.24 -52.57 16 9 Si 0.97 41.79 29.54 68.60 2.03 43.82 16 10 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 11 H -0.29 -12.41 7.11 99.48 0.71 -11.71 16 12 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 13 N -0.70 -28.66 4.98 -446.11 -2.22 -30.88 16 14 C 0.49 20.18 5.75 87.66 0.50 20.69 16 15 O -0.58 -29.81 13.65 15.96 0.22 -29.59 16 16 C 0.08 2.17 3.13 29.85 0.09 2.26 16 17 H 0.11 2.46 7.79 -2.39 -0.02 2.44 16 18 C -0.16 -3.52 9.48 71.98 0.68 -2.83 16 19 O -0.38 -12.19 9.51 -129.99 -1.24 -13.43 16 20 C 0.10 2.18 5.87 71.23 0.42 2.60 16 21 C -0.11 -2.63 5.51 -19.87 -0.11 -2.74 16 22 C -0.11 -2.27 9.70 22.27 0.22 -2.06 16 23 C -0.13 -2.34 10.05 22.27 0.22 -2.11 16 24 C -0.12 -2.15 10.05 22.27 0.22 -1.92 16 25 C -0.13 -2.75 10.05 22.27 0.22 -2.52 16 26 C -0.12 -2.89 9.70 22.27 0.22 -2.67 16 27 H 0.04 1.98 5.65 -2.39 -0.01 1.96 16 28 H 0.02 1.08 7.85 -2.39 -0.02 1.06 16 29 H 0.05 1.91 8.14 -2.38 -0.02 1.89 16 30 H 0.07 3.99 5.95 -2.39 -0.01 3.97 16 31 H 0.04 2.09 8.14 -2.39 -0.02 2.07 16 32 H 0.26 14.50 8.31 -92.71 -0.77 13.72 16 33 H 0.40 13.51 8.32 -92.71 -0.77 12.74 16 34 H 0.10 1.48 7.87 -2.39 -0.02 1.46 16 35 H 0.09 1.67 7.92 -2.39 -0.02 1.65 16 36 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.06 1.34 8.03 -2.39 -0.02 1.32 16 38 H 0.08 1.42 7.81 -2.39 -0.02 1.40 16 39 H 0.14 2.30 8.06 -2.91 -0.02 2.27 16 40 H 0.15 1.79 8.06 -2.91 -0.02 1.77 16 41 H 0.15 1.75 8.06 -2.91 -0.02 1.73 16 42 H 0.14 2.22 8.06 -2.91 -0.02 2.20 16 43 H 0.12 2.82 8.06 -2.92 -0.02 2.80 16 Total: -1.00 -72.62 355.33 3.49 -69.13 By element: Atomic # 1 Polarization: 28.37 SS G_CDS: 0.22 Total: 28.59 kcal Atomic # 6 Polarization: -19.31 SS G_CDS: 4.24 Total: -15.07 kcal Atomic # 7 Polarization: -81.47 SS G_CDS: -1.98 Total: -83.45 kcal Atomic # 8 Polarization: -42.00 SS G_CDS: -1.02 Total: -43.02 kcal Atomic # 14 Polarization: 41.79 SS G_CDS: 2.03 Total: 43.82 kcal Total: -72.62 3.49 -69.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346468602.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.823 kcal (2) G-P(sol) polarization free energy of solvation -72.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds