Wall clock time and date at job start Tue Mar 31 2020 06:13:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09001 * 109.47563 * 305.00337 * 3 2 1 5 5 C 1.50700 * 109.47798 * 185.00026 * 3 2 1 6 6 H 1.07998 * 120.00370 * 240.00769 * 5 3 2 7 7 C 1.37878 * 119.99824 * 59.99855 * 5 3 2 8 8 N 1.31523 * 120.00027 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99983 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47448 * 90.00055 * 9 7 5 11 11 H 1.48502 * 109.46950 * 209.99961 * 9 7 5 12 12 H 1.48502 * 109.46954 * 329.99800 * 9 7 5 13 13 N 1.46502 * 109.47005 * 64.99872 * 3 2 1 14 14 C 1.34776 * 120.00080 * 275.00208 * 13 3 2 15 15 O 1.21276 * 120.00121 * 0.02562 * 14 13 3 16 16 C 1.50698 * 119.99878 * 179.97438 * 14 13 3 17 17 H 1.09000 * 109.47440 * 305.00129 * 16 14 13 18 18 C 1.53001 * 109.47202 * 64.99955 * 16 14 13 19 19 O 1.42900 * 109.47124 * 185.00122 * 16 14 13 20 20 C 1.42897 * 114.00219 * 150.00309 * 19 16 14 21 21 C 1.50697 * 109.47441 * 180.02562 * 20 19 16 22 22 C 1.38236 * 119.99674 * 269.72436 * 21 20 19 23 23 C 1.38239 * 120.00149 * 179.76185 * 22 21 20 24 24 C 1.38241 * 119.99489 * 0.51273 * 23 22 21 25 25 C 1.38234 * 120.00052 * 359.73889 * 24 23 22 26 26 C 1.38232 * 120.00295 * 89.99422 * 21 20 19 27 27 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 28 28 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 29 29 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 31 31 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 32 32 H 0.96993 * 119.99651 * 179.97438 * 8 7 5 33 33 H 0.97001 * 119.99703 * 95.00546 * 13 3 2 34 34 H 1.09000 * 109.46969 * 60.00290 * 18 16 14 35 35 H 1.09004 * 109.47562 * 179.97438 * 18 16 14 36 36 H 1.08991 * 109.47376 * 300.00216 * 18 16 14 37 37 H 1.09004 * 109.46847 * 299.99869 * 20 19 16 38 38 H 1.09003 * 109.47245 * 59.99626 * 20 19 16 39 39 H 1.07998 * 120.00259 * 359.97438 * 22 21 20 40 40 H 1.07991 * 120.00598 * 180.23135 * 23 22 21 41 41 H 1.07998 * 119.99795 * 179.72259 * 24 23 22 42 42 H 1.08003 * 120.00089 * 179.97438 * 25 24 23 43 43 H 1.07995 * 119.99884 * 0.02562 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1238 6 1 4.1473 1.8887 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3374 -2.1734 9 14 6.0050 0.8801 -1.3812 10 1 6.5540 -0.3519 -0.7599 11 1 6.3835 0.9215 -2.8166 12 1 6.5576 2.0720 -0.6890 13 7 1.6525 2.0974 1.2518 14 6 0.4352 2.6643 1.3670 15 8 -0.3395 2.6319 0.4345 16 6 0.0363 3.3376 2.6549 17 1 0.1525 2.6373 3.4821 18 6 0.9291 4.5576 2.8903 19 8 -1.3280 3.7545 2.5718 20 6 -2.0092 3.7677 3.8278 21 6 -3.4322 4.2197 3.6228 22 6 -3.7494 5.5626 3.7050 23 6 -5.0537 5.9779 3.5121 24 6 -6.0428 5.0489 3.2475 25 6 -5.7264 3.7054 3.1706 26 6 -4.4211 3.2908 3.3582 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5139 0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 3.8292 -0.0604 -2.9503 33 1 2.2720 2.1231 1.9978 34 1 0.8129 5.2579 2.0632 35 1 0.6403 5.0449 3.8217 36 1 1.9696 4.2397 2.9537 37 1 -2.0049 2.7645 4.2540 38 1 -1.5041 4.4536 4.5080 39 1 -2.9776 6.2879 3.9164 40 1 -5.3010 7.0273 3.5725 41 1 -7.0626 5.3728 3.1013 42 1 -6.4992 2.9796 2.9643 43 1 -4.1741 2.2412 3.2988 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000346468608.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:32 Heat of formation + Delta-G solvation = -66.947862 kcal Electronic energy + Delta-G solvation = -23047.976909 eV Core-core repulsion = 19671.917871 eV Total energy + Delta-G solvation = -3376.059038 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.66230 -39.09679 -37.30820 -34.92149 -32.79965 -32.21006 -31.21878 -31.01297 -30.06396 -26.95620 -26.22878 -24.01000 -22.76572 -22.68114 -21.43071 -20.24124 -19.27395 -17.50771 -17.03338 -16.56846 -15.85332 -15.71531 -15.21528 -15.15002 -14.73724 -14.31709 -13.98704 -13.65724 -13.48919 -13.19600 -12.97855 -12.66461 -12.51431 -12.33601 -12.07197 -11.86938 -11.43126 -11.31607 -11.22825 -11.11947 -11.00723 -10.90832 -10.79588 -10.30093 -10.16970 -9.73047 -9.60966 -9.04107 -9.02409 -8.97855 -8.72613 -8.48149 -7.79268 -6.11501 -4.21029 1.14913 1.29880 3.24210 3.29547 3.32192 3.35670 3.42100 3.85064 4.29556 4.44266 4.68891 4.77925 4.88790 4.97874 5.03525 5.13031 5.19512 5.23381 5.28162 5.40242 5.43885 5.53266 5.70677 5.82948 5.84620 5.92483 6.21355 6.32191 6.37855 6.41441 6.48401 6.49599 6.68686 6.86495 7.05691 7.13227 7.25781 7.39526 7.47881 7.63754 7.76012 7.92156 8.19465 8.68529 8.79857 9.17346 9.46489 10.93823 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.031373 B = 0.003100 C = 0.002930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.271340 B = 9030.649358 C = 9554.999937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.128 4.128 3 C 0.272 3.728 4 H 0.049 0.951 5 C -0.533 4.533 6 H 0.061 0.939 7 C 0.066 3.934 8 N -0.882 5.882 9 Si 0.901 3.099 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.707 5.707 14 C 0.502 3.498 15 O -0.527 6.527 16 C 0.067 3.933 17 H 0.078 0.922 18 C -0.168 4.168 19 O -0.348 6.348 20 C 0.099 3.901 21 C -0.085 4.085 22 C -0.099 4.099 23 C -0.126 4.126 24 C -0.117 4.117 25 C -0.124 4.124 26 C -0.095 4.095 27 H 0.050 0.950 28 H 0.038 0.962 29 H 0.022 0.978 30 H 0.031 0.969 31 H 0.099 0.901 32 H 0.264 0.736 33 H 0.387 0.613 34 H 0.069 0.931 35 H 0.061 0.939 36 H 0.074 0.926 37 H 0.057 0.943 38 H 0.057 0.943 39 H 0.122 0.878 40 H 0.122 0.878 41 H 0.121 0.879 42 H 0.123 0.877 43 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.974 7.400 14.809 20.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.166 4.166 3 C 0.170 3.830 4 H 0.067 0.933 5 C -0.572 4.572 6 H 0.079 0.921 7 C -0.137 4.137 8 N -0.519 5.519 9 Si 0.728 3.272 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.199 1.199 13 N -0.357 5.357 14 C 0.285 3.715 15 O -0.403 6.403 16 C 0.005 3.995 17 H 0.096 0.904 18 C -0.226 4.226 19 O -0.266 6.266 20 C 0.022 3.978 21 C -0.085 4.085 22 C -0.117 4.117 23 C -0.144 4.144 24 C -0.135 4.135 25 C -0.142 4.142 26 C -0.113 4.113 27 H 0.069 0.931 28 H 0.057 0.943 29 H 0.041 0.959 30 H 0.049 0.951 31 H 0.117 0.883 32 H 0.074 0.926 33 H 0.219 0.781 34 H 0.089 0.911 35 H 0.080 0.920 36 H 0.093 0.907 37 H 0.075 0.925 38 H 0.075 0.925 39 H 0.140 0.860 40 H 0.140 0.860 41 H 0.139 0.861 42 H 0.141 0.859 43 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -12.603 7.324 13.740 20.032 hybrid contribution 1.421 -0.118 0.476 1.503 sum -11.182 7.206 14.217 19.470 Atomic orbital electron populations 1.21841 0.98326 0.97995 1.01304 1.21940 0.92613 0.99841 1.02250 1.18781 0.94147 0.89110 0.80917 0.93302 1.21223 0.90676 1.39011 1.06276 0.92095 1.24893 0.98572 0.94856 0.95390 1.69899 1.35102 1.37587 1.09323 0.86460 0.84915 0.78401 0.77385 1.20577 1.21086 1.19879 1.46438 1.14307 1.56318 1.18656 1.20057 0.83105 0.79621 0.88699 1.90692 1.51126 1.58554 1.39936 1.22047 0.83400 0.96448 0.97592 0.90378 1.22202 0.99655 0.98113 1.02589 1.88156 1.22256 1.87799 1.28377 1.21394 0.89487 1.00040 0.86884 1.19596 0.94090 0.93775 1.01070 1.21064 0.96576 0.95038 0.98988 1.21126 0.93085 0.99555 1.00622 1.21180 0.99315 0.93372 0.99667 1.21153 0.96464 0.96073 1.00517 1.21116 0.92721 0.99740 0.97745 0.93134 0.94323 0.95878 0.95064 0.88281 0.92561 0.78102 0.91142 0.92005 0.90726 0.92460 0.92491 0.85968 0.86021 0.86143 0.85937 0.85816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.14 8.51 37.16 0.32 -2.82 16 2 C -0.13 -3.12 5.45 -26.74 -0.15 -3.26 16 3 C 0.27 6.84 2.24 -69.08 -0.15 6.68 16 4 H 0.05 1.44 7.58 -51.93 -0.39 1.05 16 5 C -0.53 -13.96 8.73 -34.44 -0.30 -14.26 16 6 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 7 C 0.07 1.77 5.29 -17.82 -0.09 1.67 16 8 N -0.88 -24.72 11.30 55.43 0.63 -24.09 16 9 Si 0.90 20.50 29.54 -169.99 -5.02 15.48 16 10 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 11 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 12 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 13 N -0.71 -14.52 4.98 -54.94 -0.27 -14.80 16 14 C 0.50 10.19 5.75 -10.99 -0.06 10.12 16 15 O -0.53 -13.02 13.64 -14.30 -0.20 -13.22 16 16 C 0.07 1.01 3.13 -27.88 -0.09 0.93 16 17 H 0.08 0.98 7.79 -51.93 -0.40 0.57 16 18 C -0.17 -2.12 9.48 37.16 0.35 -1.77 16 19 O -0.35 -5.69 9.51 -55.09 -0.52 -6.21 16 20 C 0.10 1.19 5.87 36.00 0.21 1.41 16 21 C -0.09 -1.05 5.51 -104.63 -0.58 -1.63 16 22 C -0.10 -1.09 9.70 -39.58 -0.38 -1.48 16 23 C -0.13 -1.25 10.05 -39.58 -0.40 -1.65 16 24 C -0.12 -1.14 10.05 -39.58 -0.40 -1.54 16 25 C -0.12 -1.30 10.05 -39.58 -0.40 -1.70 16 26 C -0.10 -1.13 9.70 -39.58 -0.38 -1.52 16 27 H 0.05 1.24 7.85 -51.93 -0.41 0.83 16 28 H 0.04 0.86 5.64 -51.93 -0.29 0.57 16 29 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.10 2.68 5.95 -51.93 -0.31 2.37 16 32 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 33 H 0.39 6.76 8.32 -40.82 -0.34 6.42 16 34 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.06 0.62 7.87 -51.93 -0.41 0.21 16 36 H 0.07 0.87 7.92 -51.93 -0.41 0.45 16 37 H 0.06 0.62 8.03 -51.93 -0.42 0.20 16 38 H 0.06 0.56 7.81 -51.93 -0.41 0.15 16 39 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 40 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 41 H 0.12 0.88 8.06 -52.49 -0.42 0.45 16 42 H 0.12 1.02 8.06 -52.48 -0.42 0.59 16 43 H 0.12 1.38 8.06 -52.49 -0.42 0.95 16 LS Contribution 355.32 15.07 5.35 5.35 Total: -1.00 -31.98 355.32 -9.25 -41.23 By element: Atomic # 1 Polarization: 13.78 SS G_CDS: -6.71 Total: 7.06 kcal Atomic # 6 Polarization: -8.31 SS G_CDS: -2.50 Total: -10.81 kcal Atomic # 7 Polarization: -39.24 SS G_CDS: 0.35 Total: -38.89 kcal Atomic # 8 Polarization: -18.71 SS G_CDS: -0.72 Total: -19.43 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -31.98 -9.25 -41.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346468608.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.716 kcal (2) G-P(sol) polarization free energy of solvation -31.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds