Wall clock time and date at job start Tue Mar 31 2020 06:13:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09001 * 109.47563 * 305.00337 * 3 2 1 5 5 C 1.50700 * 109.47798 * 185.00026 * 3 2 1 6 6 H 1.07998 * 120.00370 * 240.00769 * 5 3 2 7 7 C 1.37878 * 119.99824 * 59.99855 * 5 3 2 8 8 N 1.31523 * 120.00027 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99983 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47448 * 90.00055 * 9 7 5 11 11 H 1.48502 * 109.46950 * 209.99961 * 9 7 5 12 12 H 1.48502 * 109.46954 * 329.99800 * 9 7 5 13 13 N 1.46502 * 109.47005 * 64.99872 * 3 2 1 14 14 C 1.34776 * 120.00080 * 275.00208 * 13 3 2 15 15 O 1.21276 * 120.00121 * 0.02562 * 14 13 3 16 16 C 1.50698 * 119.99878 * 179.97438 * 14 13 3 17 17 H 1.09000 * 109.47440 * 305.00129 * 16 14 13 18 18 C 1.53001 * 109.47202 * 64.99955 * 16 14 13 19 19 O 1.42900 * 109.47124 * 185.00122 * 16 14 13 20 20 C 1.42897 * 114.00219 * 150.00309 * 19 16 14 21 21 C 1.50697 * 109.47441 * 180.02562 * 20 19 16 22 22 C 1.38236 * 119.99674 * 269.72436 * 21 20 19 23 23 C 1.38239 * 120.00149 * 179.76185 * 22 21 20 24 24 C 1.38241 * 119.99489 * 0.51273 * 23 22 21 25 25 C 1.38234 * 120.00052 * 359.73889 * 24 23 22 26 26 C 1.38232 * 120.00295 * 89.99422 * 21 20 19 27 27 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 28 28 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 29 29 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 31 31 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 32 32 H 0.96993 * 119.99651 * 179.97438 * 8 7 5 33 33 H 0.97001 * 119.99703 * 95.00546 * 13 3 2 34 34 H 1.09000 * 109.46969 * 60.00290 * 18 16 14 35 35 H 1.09004 * 109.47562 * 179.97438 * 18 16 14 36 36 H 1.08991 * 109.47376 * 300.00216 * 18 16 14 37 37 H 1.09004 * 109.46847 * 299.99869 * 20 19 16 38 38 H 1.09003 * 109.47245 * 59.99626 * 20 19 16 39 39 H 1.07998 * 120.00259 * 359.97438 * 22 21 20 40 40 H 1.07991 * 120.00598 * 180.23135 * 23 22 21 41 41 H 1.07998 * 119.99795 * 179.72259 * 24 23 22 42 42 H 1.08003 * 120.00089 * 179.97438 * 25 24 23 43 43 H 1.07995 * 119.99884 * 0.02562 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1238 6 1 4.1473 1.8887 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3374 -2.1734 9 14 6.0050 0.8801 -1.3812 10 1 6.5540 -0.3519 -0.7599 11 1 6.3835 0.9215 -2.8166 12 1 6.5576 2.0720 -0.6890 13 7 1.6525 2.0974 1.2518 14 6 0.4352 2.6643 1.3670 15 8 -0.3395 2.6319 0.4345 16 6 0.0363 3.3376 2.6549 17 1 0.1525 2.6373 3.4821 18 6 0.9291 4.5576 2.8903 19 8 -1.3280 3.7545 2.5718 20 6 -2.0092 3.7677 3.8278 21 6 -3.4322 4.2197 3.6228 22 6 -3.7494 5.5626 3.7050 23 6 -5.0537 5.9779 3.5121 24 6 -6.0428 5.0489 3.2475 25 6 -5.7264 3.7054 3.1706 26 6 -4.4211 3.2908 3.3582 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5139 0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 3.8292 -0.0604 -2.9503 33 1 2.2720 2.1231 1.9978 34 1 0.8129 5.2579 2.0632 35 1 0.6403 5.0449 3.8217 36 1 1.9696 4.2397 2.9537 37 1 -2.0049 2.7645 4.2540 38 1 -1.5041 4.4536 4.5080 39 1 -2.9776 6.2879 3.9164 40 1 -5.3010 7.0273 3.5725 41 1 -7.0626 5.3728 3.1013 42 1 -6.4992 2.9796 2.9643 43 1 -4.1741 2.2412 3.2988 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000346468608.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:32 Heat of formation + Delta-G solvation = -85.919973 kcal Electronic energy + Delta-G solvation = -23048.799601 eV Core-core repulsion = 19671.917871 eV Total energy + Delta-G solvation = -3376.881730 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.99320 -40.16267 -38.55140 -36.80020 -34.42458 -33.60500 -32.72243 -31.79302 -31.39200 -28.89240 -27.12710 -25.53768 -24.48712 -23.47879 -22.25498 -21.98400 -21.05936 -19.09230 -18.14113 -17.71880 -17.33728 -17.09551 -16.62133 -16.32157 -16.10448 -15.82295 -15.28199 -15.07104 -14.58971 -14.31367 -14.27812 -13.89000 -13.81437 -13.60804 -13.34169 -13.21702 -13.11217 -12.96281 -12.89444 -12.65738 -12.36233 -12.15456 -12.07003 -11.91804 -11.80861 -11.59220 -11.04828 -10.88272 -10.55280 -10.29820 -9.82259 -9.75574 -9.62356 -8.14872 -6.32467 0.32798 0.49907 1.45670 1.46529 1.56824 1.83706 2.15143 2.44089 2.83303 3.14435 3.27066 3.80260 3.89964 3.96555 4.03704 4.13805 4.16613 4.28778 4.36382 4.40162 4.47759 4.55857 4.64378 4.73303 4.74581 4.76403 4.83935 5.05704 5.07453 5.15173 5.22082 5.24849 5.43466 5.54316 5.56123 5.60110 5.63388 5.67154 5.78999 5.91393 6.09434 6.16447 6.18993 6.75895 7.01659 7.34950 7.61044 8.90621 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.031373 B = 0.003100 C = 0.002930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.271340 B = 9030.649358 C = 9554.999937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.121 4.121 3 C 0.279 3.721 4 H -0.006 1.006 5 C -0.546 4.546 6 H 0.075 0.925 7 C 0.014 3.986 8 N -0.917 5.917 9 Si 0.971 3.029 10 H -0.271 1.271 11 H -0.289 1.289 12 H -0.263 1.263 13 N -0.700 5.700 14 C 0.495 3.505 15 O -0.579 6.579 16 C 0.076 3.924 17 H 0.114 0.886 18 C -0.162 4.162 19 O -0.382 6.382 20 C 0.096 3.904 21 C -0.109 4.109 22 C -0.111 4.111 23 C -0.131 4.131 24 C -0.121 4.121 25 C -0.134 4.134 26 C -0.118 4.118 27 H 0.021 0.979 28 H 0.042 0.958 29 H 0.046 0.954 30 H 0.044 0.956 31 H 0.072 0.928 32 H 0.264 0.736 33 H 0.405 0.595 34 H 0.047 0.953 35 H 0.096 0.904 36 H 0.086 0.914 37 H 0.067 0.933 38 H 0.084 0.916 39 H 0.136 0.864 40 H 0.146 0.854 41 H 0.146 0.854 42 H 0.139 0.861 43 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.490 8.239 17.304 22.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.160 4.160 3 C 0.176 3.824 4 H 0.012 0.988 5 C -0.584 4.584 6 H 0.093 0.907 7 C -0.186 4.186 8 N -0.555 5.555 9 Si 0.796 3.204 10 H -0.196 1.196 11 H -0.215 1.215 12 H -0.187 1.187 13 N -0.351 5.351 14 C 0.281 3.719 15 O -0.459 6.459 16 C 0.015 3.985 17 H 0.131 0.869 18 C -0.219 4.219 19 O -0.301 6.301 20 C 0.020 3.980 21 C -0.109 4.109 22 C -0.129 4.129 23 C -0.149 4.149 24 C -0.139 4.139 25 C -0.152 4.152 26 C -0.136 4.136 27 H 0.040 0.960 28 H 0.061 0.939 29 H 0.065 0.935 30 H 0.063 0.937 31 H 0.090 0.910 32 H 0.073 0.927 33 H 0.240 0.760 34 H 0.066 0.934 35 H 0.115 0.885 36 H 0.105 0.895 37 H 0.085 0.915 38 H 0.102 0.898 39 H 0.154 0.846 40 H 0.164 0.836 41 H 0.164 0.836 42 H 0.157 0.843 43 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -12.109 8.176 16.293 21.884 hybrid contribution 1.155 -0.344 -0.307 1.244 sum -10.954 7.831 15.985 20.901 Atomic orbital electron populations 1.21672 0.97244 0.99044 1.00051 1.21789 0.93464 0.99259 1.01448 1.18355 0.93724 0.89053 0.81281 0.98834 1.21577 0.91233 1.38829 1.06729 0.90717 1.25801 1.03368 0.94437 0.95031 1.70063 1.37100 1.38445 1.09891 0.85357 0.79048 0.78931 0.77064 1.19622 1.21497 1.18741 1.46168 1.15181 1.56039 1.17714 1.21087 0.82052 0.78630 0.90157 1.90669 1.52521 1.60325 1.42377 1.21992 0.83757 0.97829 0.94879 0.86891 1.22197 0.99767 0.96554 1.03406 1.88117 1.22798 1.87952 1.31210 1.21613 0.89322 1.01416 0.85652 1.19811 0.94356 0.94549 1.02195 1.21336 0.97634 0.94882 0.99012 1.21498 0.92720 1.00962 0.99716 1.21555 1.00667 0.93017 0.98646 1.21450 0.96397 0.97131 1.00229 1.21308 0.93669 0.99865 0.98782 0.96001 0.93932 0.93500 0.93692 0.91008 0.92658 0.75979 0.93356 0.88508 0.89516 0.91489 0.89816 0.84641 0.83599 0.83596 0.84267 0.86085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.73 8.51 71.98 0.61 -5.12 16 2 C -0.12 -6.01 5.45 30.59 0.17 -5.85 16 3 C 0.28 14.41 2.24 44.24 0.10 14.51 16 4 H -0.01 -0.39 7.58 -2.39 -0.02 -0.41 16 5 C -0.55 -28.61 8.73 25.60 0.22 -28.39 16 6 H 0.07 3.62 7.74 -2.91 -0.02 3.60 16 7 C 0.01 0.73 5.29 84.65 0.45 1.18 16 8 N -0.92 -52.79 11.30 21.45 0.24 -52.55 16 9 Si 0.97 41.83 29.54 68.60 2.03 43.86 16 10 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16 11 H -0.29 -12.54 7.11 99.48 0.71 -11.83 16 12 H -0.26 -10.79 7.11 99.48 0.71 -10.09 16 13 N -0.70 -28.63 4.98 -446.11 -2.22 -30.85 16 14 C 0.49 20.16 5.75 87.66 0.50 20.67 16 15 O -0.58 -29.77 13.64 15.97 0.22 -29.55 16 16 C 0.08 2.19 3.13 29.85 0.09 2.28 16 17 H 0.11 2.45 7.79 -2.39 -0.02 2.43 16 18 C -0.16 -3.68 9.48 71.98 0.68 -2.99 16 19 O -0.38 -12.15 9.51 -129.99 -1.24 -13.39 16 20 C 0.10 2.16 5.87 71.24 0.42 2.57 16 21 C -0.11 -2.60 5.51 -19.87 -0.11 -2.71 16 22 C -0.11 -2.30 9.70 22.27 0.22 -2.09 16 23 C -0.13 -2.36 10.05 22.27 0.22 -2.14 16 24 C -0.12 -2.14 10.05 22.27 0.22 -1.92 16 25 C -0.13 -2.70 10.05 22.27 0.22 -2.47 16 26 C -0.12 -2.80 9.70 22.27 0.22 -2.58 16 27 H 0.02 1.10 7.85 -2.39 -0.02 1.08 16 28 H 0.04 1.92 5.64 -2.39 -0.01 1.91 16 29 H 0.05 1.91 8.14 -2.38 -0.02 1.89 16 30 H 0.04 2.07 8.14 -2.39 -0.02 2.05 16 31 H 0.07 4.00 5.95 -2.39 -0.01 3.99 16 32 H 0.26 14.44 8.31 -92.71 -0.77 13.67 16 33 H 0.40 13.50 8.32 -92.71 -0.77 12.72 16 34 H 0.05 1.31 8.14 -2.39 -0.02 1.30 16 35 H 0.10 1.55 7.87 -2.39 -0.02 1.53 16 36 H 0.09 1.75 7.92 -2.39 -0.02 1.73 16 37 H 0.07 1.34 8.03 -2.39 -0.02 1.32 16 38 H 0.08 1.39 7.81 -2.39 -0.02 1.37 16 39 H 0.14 2.32 8.06 -2.91 -0.02 2.29 16 40 H 0.15 1.82 8.06 -2.92 -0.02 1.79 16 41 H 0.15 1.74 8.06 -2.91 -0.02 1.72 16 42 H 0.14 2.17 8.06 -2.91 -0.02 2.15 16 43 H 0.12 2.76 8.06 -2.91 -0.02 2.74 16 Total: -1.00 -72.57 355.32 3.49 -69.08 By element: Atomic # 1 Polarization: 28.22 SS G_CDS: 0.22 Total: 28.44 kcal Atomic # 6 Polarization: -19.29 SS G_CDS: 4.24 Total: -15.05 kcal Atomic # 7 Polarization: -81.42 SS G_CDS: -1.98 Total: -83.40 kcal Atomic # 8 Polarization: -41.92 SS G_CDS: -1.02 Total: -42.94 kcal Atomic # 14 Polarization: 41.83 SS G_CDS: 2.03 Total: 43.86 kcal Total: -72.57 3.49 -69.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346468608.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.837 kcal (2) G-P(sol) polarization free energy of solvation -72.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds