Wall clock time and date at job start Tue Mar 31 2020 06:46:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53007 * 109.46963 * 2 1 4 4 N 1.46494 * 109.46899 * 180.02562 * 3 2 1 5 5 C 1.37097 * 120.00231 * 96.74056 * 4 3 2 6 6 H 1.07998 * 120.00007 * 161.19703 * 5 4 3 7 7 C 1.38950 * 119.99625 * 341.20030 * 5 4 3 8 8 N 1.31408 * 120.00288 * 354.77511 * 7 5 4 9 9 Si 1.86803 * 119.99675 * 174.77506 * 7 5 4 10 10 H 1.48493 * 109.47244 * 90.00005 * 9 7 5 11 11 H 1.48507 * 109.46962 * 209.99858 * 9 7 5 12 12 H 1.48505 * 109.47166 * 329.99527 * 9 7 5 13 13 C 1.34775 * 119.99978 * 276.73905 * 4 3 2 14 14 O 1.21299 * 120.00007 * 4.91293 * 13 4 3 15 15 C 1.50702 * 120.00340 * 184.91146 * 13 4 3 16 16 H 1.09005 * 109.46987 * 336.65241 * 15 13 4 17 17 C 1.53001 * 109.47041 * 96.64525 * 15 13 4 18 18 C 1.50700 * 109.47433 * 216.64610 * 15 13 4 19 19 C 1.38285 * 119.97071 * 299.72892 * 18 15 13 20 20 C 1.38248 * 120.10772 * 179.72682 * 19 18 15 21 21 C 1.38167 * 120.05487 * 0.54351 * 20 19 18 22 22 C 1.38708 * 119.94340 * 359.72843 * 21 20 19 23 23 O 1.35908 * 120.05483 * 179.97438 * 22 21 20 24 24 C 1.42902 * 116.99831 * 0.02562 * 23 22 21 25 25 C 1.38124 * 119.96785 * 119.99773 * 18 15 13 26 26 H 1.09005 * 109.46762 * 299.99491 * 1 2 3 27 27 H 1.08993 * 109.47287 * 59.99762 * 1 2 3 28 28 H 1.09003 * 109.46965 * 180.02562 * 1 2 3 29 29 H 1.08993 * 109.47032 * 240.00345 * 2 1 3 30 30 H 1.08996 * 109.46858 * 119.99959 * 2 1 3 31 31 H 1.09001 * 109.46759 * 60.00171 * 3 2 1 32 32 H 1.09000 * 109.46916 * 300.00337 * 3 2 1 33 33 H 0.96996 * 120.00086 * 180.02562 * 8 7 5 34 34 H 1.08995 * 109.47143 * 55.21284 * 17 15 13 35 35 H 1.08997 * 109.47177 * 175.21608 * 17 15 13 36 36 H 1.09002 * 109.47241 * 295.21684 * 17 15 13 37 37 H 1.07995 * 119.94489 * 359.97277 * 19 18 15 38 38 H 1.07995 * 119.97536 * 180.25107 * 20 19 18 39 39 H 1.08006 * 120.03044 * 179.70871 * 21 20 19 40 40 H 1.08995 * 109.46984 * 60.00501 * 24 23 22 41 41 H 1.09000 * 109.47055 * 180.02562 * 24 23 22 42 42 H 1.09005 * 109.46982 * 299.99896 * 24 23 22 43 43 H 1.08000 * 120.03043 * 0.02562 * 25 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.1901 1.5821 -1.1799 6 1 5.2268 1.8844 -1.1697 7 6 3.5504 1.3346 -2.3884 8 7 2.3217 0.8685 -2.3981 9 14 4.4370 1.6645 -3.9991 10 1 5.1684 0.4430 -4.4208 11 1 3.4468 2.0335 -5.0426 12 1 5.4003 2.7795 -3.8146 13 6 4.1794 1.3054 1.1582 14 8 3.5766 1.0929 2.1892 15 6 5.6822 1.4161 1.1732 16 1 6.0729 1.1927 0.1804 17 6 6.0850 2.8373 1.5717 18 6 6.2483 0.4359 2.1681 19 6 5.8977 0.5260 3.5027 20 6 6.4109 -0.3752 4.4169 21 6 7.2844 -1.3615 4.0008 22 6 7.6420 -1.4504 2.6635 23 8 8.5015 -2.4194 2.2518 24 6 8.9980 -3.3131 3.2502 25 6 7.1212 -0.5483 1.7470 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5137 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6767 1.9564 -0.8900 33 1 1.8754 0.6954 -3.2417 34 1 5.6240 3.0915 2.5261 35 1 7.1694 2.8949 1.6653 36 1 5.7486 3.5381 0.8076 37 1 5.2188 1.2992 3.8307 38 1 6.1325 -0.3053 5.4580 39 1 7.6888 -2.0624 4.7161 40 1 8.1638 -3.8394 3.7139 41 1 9.6721 -4.0349 2.7889 42 1 9.5373 -2.7465 4.0093 43 1 7.3984 -0.6152 0.7053 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000346539138.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:12 Heat of formation + Delta-G solvation = -44.146274 kcal Electronic energy + Delta-G solvation = -23933.933552 eV Core-core repulsion = 20558.863265 eV Total energy + Delta-G solvation = -3375.070287 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.98367 -38.84079 -37.14137 -35.14100 -33.28492 -32.06313 -31.28834 -30.38245 -28.65113 -27.16979 -25.92736 -24.74877 -23.36403 -22.17741 -21.12121 -20.07205 -19.04807 -17.74094 -16.49922 -16.28456 -15.82176 -15.59389 -15.40590 -14.46219 -14.29387 -13.90971 -13.87487 -13.46736 -13.27549 -13.11873 -12.81176 -12.45719 -12.19693 -12.12033 -11.84209 -11.58592 -11.32144 -11.27967 -11.06068 -10.98490 -10.85949 -10.70631 -10.63134 -10.46183 -10.27511 -10.20494 -10.00459 -9.56681 -8.77017 -8.60445 -8.10851 -7.80613 -7.63130 -6.25673 -3.92909 1.69018 1.87431 3.11076 3.20623 3.22036 3.42999 3.88671 4.08180 4.18723 4.84633 4.99788 5.05830 5.13828 5.15131 5.23814 5.41589 5.46984 5.69412 5.82641 5.84754 5.89649 6.00527 6.13890 6.23331 6.24116 6.33762 6.41011 6.48343 6.56293 6.61171 6.61910 6.77981 6.88340 6.96492 7.09898 7.13641 7.18032 7.20699 7.35846 7.58277 7.67392 7.83821 7.90816 8.48768 9.09060 9.57221 9.96382 10.66638 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.014921 B = 0.005041 C = 0.004535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1876.071132 B = 5553.143579 C = 6173.263675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.117 4.117 3 C 0.144 3.856 4 N -0.441 5.441 5 C -0.330 4.330 6 H 0.098 0.902 7 C 0.033 3.967 8 N -0.865 5.865 9 Si 0.922 3.078 10 H -0.278 1.278 11 H -0.283 1.283 12 H -0.271 1.271 13 C 0.466 3.534 14 O -0.600 6.600 15 C -0.068 4.068 16 H 0.102 0.898 17 C -0.129 4.129 18 C -0.018 4.018 19 C -0.114 4.114 20 C -0.092 4.092 21 C -0.216 4.216 22 C 0.114 3.886 23 O -0.321 6.321 24 C 0.030 3.970 25 C -0.145 4.145 26 H 0.035 0.965 27 H 0.051 0.949 28 H 0.036 0.964 29 H 0.093 0.907 30 H 0.031 0.969 31 H 0.027 0.973 32 H 0.103 0.897 33 H 0.266 0.734 34 H 0.057 0.943 35 H 0.055 0.945 36 H 0.063 0.937 37 H 0.131 0.869 38 H 0.119 0.881 39 H 0.120 0.880 40 H 0.052 0.948 41 H 0.095 0.905 42 H 0.051 0.949 43 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.193 -2.432 6.713 10.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.155 4.155 3 C 0.022 3.978 4 N -0.158 5.158 5 C -0.457 4.457 6 H 0.115 0.885 7 C -0.170 4.170 8 N -0.505 5.505 9 Si 0.749 3.251 10 H -0.204 1.204 11 H -0.208 1.208 12 H -0.195 1.195 13 C 0.254 3.746 14 O -0.487 6.487 15 C -0.089 4.089 16 H 0.120 0.880 17 C -0.187 4.187 18 C -0.019 4.019 19 C -0.132 4.132 20 C -0.111 4.111 21 C -0.235 4.235 22 C 0.069 3.931 23 O -0.235 6.235 24 C -0.065 4.065 25 C -0.163 4.163 26 H 0.054 0.946 27 H 0.070 0.930 28 H 0.055 0.945 29 H 0.111 0.889 30 H 0.050 0.950 31 H 0.046 0.954 32 H 0.120 0.880 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.074 0.926 36 H 0.082 0.918 37 H 0.149 0.851 38 H 0.137 0.863 39 H 0.137 0.863 40 H 0.071 0.929 41 H 0.113 0.887 42 H 0.070 0.930 43 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 7.790 -2.608 6.830 10.684 hybrid contribution 0.344 -0.150 -0.687 0.782 sum 8.134 -2.758 6.143 10.560 Atomic orbital electron populations 1.21576 0.97829 0.99559 1.00260 1.21780 0.93519 0.98640 1.01602 1.21295 0.79753 0.96826 0.99957 1.43756 1.05641 1.61109 1.05278 1.19699 0.97022 1.45885 0.83128 0.88460 1.25286 0.96206 0.96043 0.99493 1.70081 1.11671 1.42177 1.26525 0.86006 0.78962 0.78785 0.81397 1.20369 1.20820 1.19529 1.19788 0.88275 0.82264 0.84276 1.90512 1.69787 1.55200 1.33155 1.20176 0.95176 0.94627 0.98948 0.88022 1.21617 1.00617 0.94548 1.01868 1.19434 0.93820 0.94391 0.94212 1.21079 0.99298 1.00349 0.92510 1.20881 0.96226 0.94574 0.99376 1.21084 1.04843 1.03030 0.94561 1.18886 0.91764 0.89681 0.92757 1.86051 1.59311 1.41423 1.36710 1.22962 0.98780 0.92520 0.92240 1.20333 1.00850 0.95890 0.99247 0.94612 0.92970 0.94527 0.88900 0.95013 0.95436 0.87955 0.92285 0.92426 0.92566 0.91768 0.85079 0.86345 0.86260 0.92930 0.88699 0.93013 0.85368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.66 9.91 37.16 0.37 -2.29 16 2 C -0.12 -2.76 5.63 -26.72 -0.15 -2.92 16 3 C 0.14 3.55 4.47 -4.04 -0.02 3.53 16 4 N -0.44 -11.03 2.64 -114.81 -0.30 -11.33 16 5 C -0.33 -8.10 9.04 -14.93 -0.14 -8.23 16 6 H 0.10 2.24 5.94 -52.49 -0.31 1.93 16 7 C 0.03 0.81 5.25 -17.47 -0.09 0.71 16 8 N -0.87 -21.47 7.89 55.50 0.44 -21.03 16 9 Si 0.92 19.03 29.56 -169.99 -5.02 14.01 16 10 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 11 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 12 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 13 C 0.47 11.20 6.54 -10.99 -0.07 11.13 16 14 O -0.60 -15.60 14.16 5.54 0.08 -15.52 16 15 C -0.07 -1.36 2.36 -92.92 -0.22 -1.58 16 16 H 0.10 2.03 5.67 -51.93 -0.29 1.74 16 17 C -0.13 -2.19 8.91 37.16 0.33 -1.86 16 18 C -0.02 -0.34 4.72 -104.65 -0.49 -0.84 16 19 C -0.11 -2.08 8.07 -39.56 -0.32 -2.40 16 20 C -0.09 -1.45 10.04 -39.60 -0.40 -1.85 16 21 C -0.22 -3.24 9.04 -39.43 -0.36 -3.60 16 22 C 0.11 1.88 6.69 -39.22 -0.26 1.62 16 23 O -0.32 -4.84 10.50 -19.45 -0.20 -5.04 16 24 C 0.03 0.31 9.81 101.05 0.99 1.30 16 25 C -0.14 -2.61 9.61 -39.43 -0.38 -2.99 16 26 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 28 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 29 H 0.09 2.38 6.18 -51.93 -0.32 2.06 16 30 H 0.03 0.79 7.91 -51.93 -0.41 0.38 16 31 H 0.03 0.68 7.71 -51.93 -0.40 0.28 16 32 H 0.10 2.60 5.91 -51.93 -0.31 2.29 16 33 H 0.27 6.33 8.31 -40.82 -0.34 5.99 16 34 H 0.06 0.98 7.54 -51.93 -0.39 0.58 16 35 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 37 H 0.13 2.49 6.70 -52.49 -0.35 2.14 16 38 H 0.12 1.54 8.06 -52.49 -0.42 1.12 16 39 H 0.12 1.43 6.30 -52.48 -0.33 1.10 16 40 H 0.05 0.50 7.66 -51.93 -0.40 0.10 16 41 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.05 0.46 7.66 -51.93 -0.40 0.06 16 43 H 0.13 2.22 7.94 -52.49 -0.42 1.81 16 LS Contribution 344.52 15.07 5.19 5.19 Total: -1.00 -28.47 344.52 -7.45 -35.92 By element: Atomic # 1 Polarization: 14.50 SS G_CDS: -6.43 Total: 8.07 kcal Atomic # 6 Polarization: -9.06 SS G_CDS: -1.20 Total: -10.26 kcal Atomic # 7 Polarization: -32.50 SS G_CDS: 0.13 Total: -32.37 kcal Atomic # 8 Polarization: -20.44 SS G_CDS: -0.13 Total: -20.56 kcal Atomic # 14 Polarization: 19.03 SS G_CDS: -5.02 Total: 14.01 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -28.47 -7.45 -35.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346539138.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.225 kcal (2) G-P(sol) polarization free energy of solvation -28.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds