Wall clock time and date at job start Tue Mar 31 2020 06:46:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53007 * 109.46963 * 2 1 4 4 N 1.46494 * 109.46899 * 180.02562 * 3 2 1 5 5 C 1.37097 * 120.00231 * 96.74056 * 4 3 2 6 6 H 1.07998 * 120.00007 * 161.19703 * 5 4 3 7 7 C 1.38950 * 119.99625 * 341.20030 * 5 4 3 8 8 N 1.31408 * 120.00288 * 354.77511 * 7 5 4 9 9 Si 1.86803 * 119.99675 * 174.77506 * 7 5 4 10 10 H 1.48493 * 109.47244 * 90.00005 * 9 7 5 11 11 H 1.48507 * 109.46962 * 209.99858 * 9 7 5 12 12 H 1.48505 * 109.47166 * 329.99527 * 9 7 5 13 13 C 1.34775 * 119.99978 * 276.73905 * 4 3 2 14 14 O 1.21299 * 120.00007 * 4.91293 * 13 4 3 15 15 C 1.50702 * 120.00340 * 184.91146 * 13 4 3 16 16 H 1.09005 * 109.46987 * 336.65241 * 15 13 4 17 17 C 1.53001 * 109.47041 * 96.64525 * 15 13 4 18 18 C 1.50700 * 109.47433 * 216.64610 * 15 13 4 19 19 C 1.38285 * 119.97071 * 299.72892 * 18 15 13 20 20 C 1.38248 * 120.10772 * 179.72682 * 19 18 15 21 21 C 1.38167 * 120.05487 * 0.54351 * 20 19 18 22 22 C 1.38708 * 119.94340 * 359.72843 * 21 20 19 23 23 O 1.35908 * 120.05483 * 179.97438 * 22 21 20 24 24 C 1.42902 * 116.99831 * 0.02562 * 23 22 21 25 25 C 1.38124 * 119.96785 * 119.99773 * 18 15 13 26 26 H 1.09005 * 109.46762 * 299.99491 * 1 2 3 27 27 H 1.08993 * 109.47287 * 59.99762 * 1 2 3 28 28 H 1.09003 * 109.46965 * 180.02562 * 1 2 3 29 29 H 1.08993 * 109.47032 * 240.00345 * 2 1 3 30 30 H 1.08996 * 109.46858 * 119.99959 * 2 1 3 31 31 H 1.09001 * 109.46759 * 60.00171 * 3 2 1 32 32 H 1.09000 * 109.46916 * 300.00337 * 3 2 1 33 33 H 0.96996 * 120.00086 * 180.02562 * 8 7 5 34 34 H 1.08995 * 109.47143 * 55.21284 * 17 15 13 35 35 H 1.08997 * 109.47177 * 175.21608 * 17 15 13 36 36 H 1.09002 * 109.47241 * 295.21684 * 17 15 13 37 37 H 1.07995 * 119.94489 * 359.97277 * 19 18 15 38 38 H 1.07995 * 119.97536 * 180.25107 * 20 19 18 39 39 H 1.08006 * 120.03044 * 179.70871 * 21 20 19 40 40 H 1.08995 * 109.46984 * 60.00501 * 24 23 22 41 41 H 1.09000 * 109.47055 * 180.02562 * 24 23 22 42 42 H 1.09005 * 109.46982 * 299.99896 * 24 23 22 43 43 H 1.08000 * 120.03043 * 0.02562 * 25 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.1901 1.5821 -1.1799 6 1 5.2268 1.8844 -1.1697 7 6 3.5504 1.3346 -2.3884 8 7 2.3217 0.8685 -2.3981 9 14 4.4370 1.6645 -3.9991 10 1 5.1684 0.4430 -4.4208 11 1 3.4468 2.0335 -5.0426 12 1 5.4003 2.7795 -3.8146 13 6 4.1794 1.3054 1.1582 14 8 3.5766 1.0929 2.1892 15 6 5.6822 1.4161 1.1732 16 1 6.0729 1.1927 0.1804 17 6 6.0850 2.8373 1.5717 18 6 6.2483 0.4359 2.1681 19 6 5.8977 0.5260 3.5027 20 6 6.4109 -0.3752 4.4169 21 6 7.2844 -1.3615 4.0008 22 6 7.6420 -1.4504 2.6635 23 8 8.5015 -2.4194 2.2518 24 6 8.9980 -3.3131 3.2502 25 6 7.1212 -0.5483 1.7470 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5137 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6767 1.9564 -0.8900 33 1 1.8754 0.6954 -3.2417 34 1 5.6240 3.0915 2.5261 35 1 7.1694 2.8949 1.6653 36 1 5.7486 3.5381 0.8076 37 1 5.2188 1.2992 3.8307 38 1 6.1325 -0.3053 5.4580 39 1 7.6888 -2.0624 4.7161 40 1 8.1638 -3.8394 3.7139 41 1 9.6721 -4.0349 2.7889 42 1 9.5373 -2.7465 4.0093 43 1 7.3984 -0.6152 0.7053 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000346539138.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:11 Heat of formation + Delta-G solvation = -58.380044 kcal Electronic energy + Delta-G solvation = -23934.550774 eV Core-core repulsion = 20558.863265 eV Total energy + Delta-G solvation = -3375.687509 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.34213 -40.45605 -38.50144 -36.98679 -34.86095 -33.84638 -33.14521 -31.62738 -29.97682 -28.09523 -27.72990 -26.55558 -24.88578 -23.46294 -22.69178 -21.77782 -20.83836 -19.17733 -18.14742 -17.93577 -17.05255 -16.78870 -16.59400 -16.23540 -15.96332 -15.63782 -15.45609 -15.17522 -14.69068 -14.46396 -14.26054 -14.05497 -13.58036 -13.46307 -13.22438 -13.04181 -12.94242 -12.86203 -12.69690 -12.45980 -12.38010 -12.21402 -12.10432 -12.02152 -11.90967 -11.84585 -11.52978 -11.44895 -10.69190 -10.23593 -9.68105 -9.55900 -9.06973 -8.12176 -5.85732 0.38433 0.56750 1.45919 1.51074 1.60936 2.07430 2.33135 2.40039 2.80422 3.13871 3.20712 3.80963 3.92358 4.17195 4.22030 4.31712 4.36268 4.41833 4.42738 4.51005 4.51534 4.55398 4.61707 4.72151 4.74091 4.77647 4.89860 4.97864 5.00186 5.13128 5.15005 5.21539 5.28102 5.34313 5.35234 5.47031 5.56738 5.64076 5.82016 5.87723 5.89695 5.98202 6.51734 6.57384 7.19194 7.67670 8.07091 8.80566 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.014921 B = 0.005041 C = 0.004535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1876.071132 B = 5553.143579 C = 6173.263675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.106 4.106 3 C 0.148 3.852 4 N -0.455 5.455 5 C -0.350 4.350 6 H 0.108 0.892 7 C -0.006 4.006 8 N -0.884 5.884 9 Si 0.988 3.012 10 H -0.279 1.279 11 H -0.282 1.282 12 H -0.261 1.261 13 C 0.456 3.544 14 O -0.627 6.627 15 C -0.061 4.061 16 H 0.096 0.904 17 C -0.121 4.121 18 C -0.037 4.037 19 C -0.134 4.134 20 C -0.088 4.088 21 C -0.208 4.208 22 C 0.113 3.887 23 O -0.338 6.338 24 C 0.018 3.982 25 C -0.166 4.166 26 H 0.045 0.955 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.072 0.928 30 H 0.007 0.993 31 H 0.017 0.983 32 H 0.094 0.906 33 H 0.268 0.732 34 H 0.053 0.947 35 H 0.082 0.918 36 H 0.061 0.939 37 H 0.116 0.884 38 H 0.148 0.852 39 H 0.156 0.844 40 H 0.061 0.939 41 H 0.119 0.881 42 H 0.069 0.931 43 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.680 -3.226 7.190 12.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.144 4.144 3 C 0.025 3.975 4 N -0.172 5.172 5 C -0.478 4.478 6 H 0.126 0.874 7 C -0.208 4.208 8 N -0.524 5.524 9 Si 0.812 3.188 10 H -0.205 1.205 11 H -0.208 1.208 12 H -0.185 1.185 13 C 0.245 3.755 14 O -0.515 6.515 15 C -0.083 4.083 16 H 0.114 0.886 17 C -0.178 4.178 18 C -0.037 4.037 19 C -0.152 4.152 20 C -0.106 4.106 21 C -0.227 4.227 22 C 0.068 3.932 23 O -0.253 6.253 24 C -0.076 4.076 25 C -0.184 4.184 26 H 0.064 0.936 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.091 0.909 30 H 0.026 0.974 31 H 0.036 0.964 32 H 0.112 0.888 33 H 0.078 0.922 34 H 0.072 0.928 35 H 0.101 0.899 36 H 0.080 0.920 37 H 0.134 0.866 38 H 0.166 0.834 39 H 0.174 0.826 40 H 0.080 0.920 41 H 0.137 0.863 42 H 0.087 0.913 43 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 9.288 -3.403 7.314 12.302 hybrid contribution -0.088 -0.006 -0.767 0.772 sum 9.200 -3.409 6.548 11.795 Atomic orbital electron populations 1.21484 0.94795 1.01063 1.00898 1.21624 0.96180 0.97396 0.99209 1.21218 0.80287 0.97179 0.98822 1.44008 1.05826 1.61350 1.05985 1.20049 0.97699 1.46718 0.83286 0.87443 1.26081 0.96924 0.95547 1.02218 1.70187 1.12664 1.42266 1.27238 0.84996 0.77886 0.78626 0.77267 1.20504 1.20771 1.18495 1.20524 0.90094 0.81344 0.83562 1.90472 1.70890 1.56240 1.33927 1.20111 0.92041 0.96798 0.99310 0.88574 1.21578 1.02263 0.92585 1.01402 1.19401 0.94958 0.94994 0.94396 1.21060 1.00085 1.01253 0.92825 1.21216 0.95424 0.93610 1.00376 1.21449 1.03756 1.02923 0.94539 1.18983 0.91605 0.89550 0.93085 1.86037 1.58836 1.41523 1.38876 1.23345 0.99616 0.92398 0.92222 1.20392 1.01684 0.96665 0.99689 0.93584 0.92636 0.92601 0.90918 0.97416 0.96419 0.88827 0.92202 0.92790 0.89896 0.92024 0.86645 0.83382 0.82642 0.92036 0.86302 0.91280 0.85725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.89 9.91 71.99 0.71 -4.18 16 2 C -0.11 -5.12 5.63 30.60 0.17 -4.95 16 3 C 0.15 7.52 4.47 86.38 0.39 7.90 16 4 N -0.45 -23.50 2.64 -635.53 -1.68 -25.17 16 5 C -0.35 -17.51 9.04 84.04 0.76 -16.75 16 6 H 0.11 5.01 5.94 -2.91 -0.02 4.99 16 7 C -0.01 -0.31 5.25 84.93 0.45 0.14 16 8 N -0.88 -44.42 7.89 21.66 0.17 -44.25 16 9 Si 0.99 38.88 29.56 68.60 2.03 40.91 16 10 H -0.28 -11.01 7.11 99.48 0.71 -10.30 16 11 H -0.28 -11.02 7.11 99.48 0.71 -10.32 16 12 H -0.26 -9.79 7.11 99.48 0.71 -9.09 16 13 C 0.46 22.65 6.54 87.66 0.57 23.23 16 14 O -0.63 -33.84 14.16 -3.09 -0.04 -33.88 16 15 C -0.06 -2.51 2.36 -12.29 -0.03 -2.54 16 16 H 0.10 3.96 5.67 -2.38 -0.01 3.94 16 17 C -0.12 -4.12 8.91 71.98 0.64 -3.48 16 18 C -0.04 -1.42 4.72 -19.88 -0.09 -1.52 16 19 C -0.13 -4.90 8.07 22.28 0.18 -4.72 16 20 C -0.09 -2.62 10.04 22.26 0.22 -2.39 16 21 C -0.21 -5.68 9.04 22.37 0.20 -5.48 16 22 C 0.11 3.57 6.69 22.51 0.15 3.72 16 23 O -0.34 -9.54 10.50 -92.51 -0.97 -10.51 16 24 C 0.02 0.31 9.81 113.37 1.11 1.42 16 25 C -0.17 -6.01 9.61 22.37 0.21 -5.79 16 26 H 0.05 1.69 8.14 -2.38 -0.02 1.67 16 27 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 28 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 29 H 0.07 3.83 6.18 -2.39 -0.01 3.81 16 30 H 0.01 0.37 7.91 -2.39 -0.02 0.35 16 31 H 0.02 0.90 7.71 -2.39 -0.02 0.89 16 32 H 0.09 4.90 5.91 -2.39 -0.01 4.89 16 33 H 0.27 12.79 8.31 -92.71 -0.77 12.02 16 34 H 0.05 1.86 7.54 -2.39 -0.02 1.84 16 35 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 36 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 37 H 0.12 4.51 6.70 -2.91 -0.02 4.49 16 38 H 0.15 3.42 8.06 -2.91 -0.02 3.39 16 39 H 0.16 3.05 6.30 -2.91 -0.02 3.03 16 40 H 0.06 0.95 7.66 -2.39 -0.02 0.93 16 41 H 0.12 1.44 8.14 -2.39 -0.02 1.42 16 42 H 0.07 0.95 7.66 -2.38 -0.02 0.93 16 43 H 0.12 4.44 7.94 -2.91 -0.02 4.41 16 Total: -1.00 -62.68 344.52 6.16 -56.53 By element: Atomic # 1 Polarization: 30.77 SS G_CDS: 1.00 Total: 31.77 kcal Atomic # 6 Polarization: -21.04 SS G_CDS: 5.65 Total: -15.39 kcal Atomic # 7 Polarization: -67.92 SS G_CDS: -1.51 Total: -69.42 kcal Atomic # 8 Polarization: -43.38 SS G_CDS: -1.01 Total: -44.39 kcal Atomic # 14 Polarization: 38.88 SS G_CDS: 2.03 Total: 40.91 kcal Total: -62.68 6.16 -56.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346539138.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.853 kcal (2) G-P(sol) polarization free energy of solvation -62.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds