Wall clock time and date at job start Tue Mar 31 2020 06:46:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53002 * 109.47252 * 2 1 4 4 N 1.46491 * 109.47101 * 180.02562 * 3 2 1 5 5 C 1.37103 * 119.99832 * 92.60325 * 4 3 2 6 6 H 1.08006 * 119.99947 * 226.38596 * 5 4 3 7 7 C 1.38947 * 120.00342 * 46.39153 * 5 4 3 8 8 N 1.31407 * 120.00139 * 207.94497 * 7 5 4 9 9 Si 1.86801 * 119.99737 * 27.94032 * 7 5 4 10 10 H 1.48500 * 109.47019 * 94.16727 * 9 7 5 11 11 H 1.48503 * 109.47087 * 214.16894 * 9 7 5 12 12 H 1.48499 * 109.47312 * 334.16755 * 9 7 5 13 13 C 1.34782 * 120.00322 * 272.59891 * 4 3 2 14 14 O 1.21286 * 119.99531 * 4.84527 * 13 4 3 15 15 C 1.50694 * 120.00142 * 184.84309 * 13 4 3 16 16 H 1.08999 * 109.47483 * 23.08804 * 15 13 4 17 17 C 1.53003 * 109.46981 * 263.09173 * 15 13 4 18 18 C 1.53001 * 109.47320 * 143.09148 * 15 13 4 19 19 O 1.42893 * 109.47493 * 184.99782 * 18 15 13 20 20 C 1.35903 * 117.00055 * 179.97438 * 19 18 15 21 21 C 1.38723 * 120.05578 * 359.72957 * 20 19 18 22 22 C 1.38151 * 119.94497 * 179.74321 * 21 20 19 23 23 C 1.38266 * 120.05243 * 0.50757 * 22 21 20 24 24 C 1.38271 * 120.11195 * 359.76680 * 23 22 21 25 25 C 1.38139 * 120.05395 * 359.97438 * 24 23 22 26 26 H 1.08991 * 109.47147 * 59.99605 * 1 2 3 27 27 H 1.08999 * 109.46758 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.46447 * 299.99594 * 1 2 3 29 29 H 1.09004 * 109.46840 * 240.00329 * 2 1 3 30 30 H 1.08994 * 109.47615 * 120.00609 * 2 1 3 31 31 H 1.08997 * 109.46646 * 60.00131 * 3 2 1 32 32 H 1.08997 * 109.46827 * 300.00687 * 3 2 1 33 33 H 0.97000 * 119.99882 * 180.02562 * 8 7 5 34 34 H 1.09007 * 109.47074 * 183.03697 * 17 15 13 35 35 H 1.09007 * 109.47022 * 303.03097 * 17 15 13 36 36 H 1.08992 * 109.47223 * 63.03318 * 17 15 13 37 37 H 1.09003 * 109.46480 * 305.00232 * 18 15 13 38 38 H 1.09006 * 109.46796 * 64.99710 * 18 15 13 39 39 H 1.08007 * 120.03022 * 359.97438 * 21 20 19 40 40 H 1.07996 * 119.97140 * 180.27309 * 22 21 20 41 41 H 1.07997 * 119.94219 * 179.74658 * 23 22 21 42 42 H 1.07995 * 119.97176 * 179.97438 * 24 23 22 43 43 H 1.07999 * 120.02669 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1900 1.4966 -1.1870 6 1 5.0187 0.8266 -1.3632 7 6 3.8182 2.4132 -2.1628 8 7 4.0432 2.1509 -3.4306 9 14 2.9985 4.0185 -1.6723 10 1 4.0280 5.0811 -1.5442 11 1 2.0116 4.4081 -2.7114 12 1 2.3042 3.8425 -0.3715 13 6 4.1795 1.3893 1.1651 14 8 3.5767 1.2530 2.2087 15 6 5.6824 1.4993 1.1718 16 1 6.0135 2.0090 0.2670 17 6 6.2960 0.0985 1.2215 18 6 6.1301 2.2960 2.3988 19 8 7.5433 2.5002 2.3446 20 6 8.1058 3.1965 3.3672 21 6 7.3130 3.6782 4.3987 22 6 7.8879 4.3812 5.4398 23 6 9.2508 4.6138 5.4489 24 6 10.0424 4.1396 4.4191 25 6 9.4730 3.4316 3.3785 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3632 0.5138 0.8900 29 1 1.8934 -0.5138 -0.8901 30 1 1.8935 -0.5139 0.8898 31 1 1.6768 1.9562 0.8900 32 1 1.6767 1.9563 -0.8899 33 1 3.7840 2.7910 -4.1117 34 1 7.3814 0.1792 1.2807 35 1 5.9226 -0.4307 2.0983 36 1 6.0210 -0.4507 0.3211 37 1 5.6236 3.2612 2.4098 38 1 5.8774 1.7427 3.3033 39 1 6.2477 3.5006 4.3897 40 1 7.2717 4.7525 6.2452 41 1 9.6978 5.1670 6.2616 42 1 11.1066 4.3230 4.4283 43 1 10.0917 3.0618 2.5742 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348634916.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:21 Heat of formation + Delta-G solvation = -57.748207 kcal Electronic energy + Delta-G solvation = -23441.710828 eV Core-core repulsion = 20066.050717 eV Total energy + Delta-G solvation = -3375.660111 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.04878 -39.06386 -37.29477 -35.38396 -33.46980 -32.66917 -31.60839 -30.96476 -29.63796 -26.46280 -26.13777 -24.91523 -22.94312 -22.36587 -21.52465 -20.68657 -18.87061 -18.22345 -16.82256 -16.42550 -15.82988 -15.61001 -15.52931 -15.17452 -14.45973 -14.23937 -14.10425 -13.75826 -13.48846 -13.30511 -13.07061 -13.00698 -12.48656 -12.34284 -12.25248 -11.78774 -11.56973 -11.48370 -11.33986 -11.23543 -11.06751 -10.95003 -10.87739 -10.46916 -10.39619 -10.24476 -10.02435 -9.86733 -9.19501 -8.99339 -8.60642 -8.10722 -7.71990 -6.60637 -4.21262 1.35208 1.49057 3.04674 3.16599 3.24949 3.27004 3.69396 3.82297 4.09454 4.43008 4.83558 4.85224 4.92949 5.13270 5.25445 5.34641 5.39547 5.49946 5.59614 5.63453 5.66619 5.68394 5.84881 5.93716 6.01278 6.05893 6.10062 6.19747 6.34763 6.35937 6.39668 6.41706 6.45088 6.46036 6.52619 6.61345 6.71529 6.80151 6.84852 6.93420 7.35078 7.60283 8.02709 8.20830 8.90106 9.26184 9.63390 10.49365 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.018310 B = 0.004187 C = 0.003891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1528.820346 B = 6686.230308 C = 7193.762612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.133 4.133 3 C 0.117 3.883 4 N -0.457 5.457 5 C -0.357 4.357 6 H 0.100 0.900 7 C 0.081 3.919 8 N -0.843 5.843 9 Si 0.855 3.145 10 H -0.274 1.274 11 H -0.281 1.281 12 H -0.255 1.255 13 C 0.488 3.512 14 O -0.599 6.599 15 C -0.097 4.097 16 H 0.113 0.887 17 C -0.131 4.131 18 C 0.080 3.920 19 O -0.310 6.310 20 C 0.140 3.860 21 C -0.211 4.211 22 C -0.081 4.081 23 C -0.169 4.169 24 C -0.084 4.084 25 C -0.158 4.158 26 H 0.051 0.949 27 H 0.049 0.951 28 H 0.049 0.951 29 H 0.067 0.933 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.065 0.935 33 H 0.276 0.724 34 H 0.062 0.938 35 H 0.051 0.949 36 H 0.063 0.937 37 H 0.060 0.940 38 H 0.070 0.930 39 H 0.130 0.870 40 H 0.122 0.878 41 H 0.119 0.881 42 H 0.125 0.875 43 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.357 2.263 10.618 12.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.172 4.172 3 C -0.006 4.006 4 N -0.176 5.176 5 C -0.484 4.484 6 H 0.118 0.882 7 C -0.129 4.129 8 N -0.476 5.476 9 Si 0.680 3.320 10 H -0.200 1.200 11 H -0.206 1.206 12 H -0.179 1.179 13 C 0.277 3.723 14 O -0.485 6.485 15 C -0.118 4.118 16 H 0.131 0.869 17 C -0.188 4.188 18 C 0.005 3.995 19 O -0.223 6.223 20 C 0.094 3.906 21 C -0.229 4.229 22 C -0.099 4.099 23 C -0.187 4.187 24 C -0.102 4.102 25 C -0.176 4.176 26 H 0.070 0.930 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.086 0.914 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.083 0.917 33 H 0.086 0.914 34 H 0.081 0.919 35 H 0.070 0.930 36 H 0.082 0.918 37 H 0.078 0.922 38 H 0.088 0.912 39 H 0.148 0.852 40 H 0.140 0.860 41 H 0.137 0.863 42 H 0.143 0.857 43 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 5.097 2.151 10.688 12.035 hybrid contribution -0.597 1.004 -0.022 1.168 sum 4.500 3.155 10.666 11.999 Atomic orbital electron populations 1.21699 0.96460 1.00972 1.01288 1.21794 0.94722 0.98290 1.02363 1.21625 0.82302 0.96027 1.00693 1.43669 1.04083 1.64453 1.05387 1.18927 1.18178 1.20631 0.90620 0.88213 1.25425 0.95289 0.97710 0.94448 1.69868 1.43258 1.34693 0.99813 0.87210 0.80026 0.84885 0.79924 1.20013 1.20620 1.17928 1.20194 0.88682 0.79836 0.83546 1.90538 1.70530 1.55115 1.32288 1.20962 0.93888 0.98054 0.98935 0.86870 1.21583 1.00433 0.94714 1.02106 1.22641 0.77344 0.99894 0.99626 1.86042 1.24488 1.69150 1.42660 1.19107 0.92680 0.91429 0.87385 1.21405 1.00644 1.04472 0.96421 1.20944 0.94999 0.96685 0.97284 1.21000 0.93987 1.03785 0.99913 1.20920 0.99624 0.96372 0.93274 1.20469 0.92196 1.03933 1.01028 0.92983 0.93152 0.93152 0.91378 0.92143 0.92068 0.91716 0.91390 0.91881 0.92987 0.91774 0.92153 0.91218 0.85195 0.86047 0.86276 0.85672 0.85236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.28 9.91 37.16 0.37 -1.91 16 2 C -0.13 -2.56 6.25 -26.73 -0.17 -2.72 16 3 C 0.12 2.53 3.59 -4.05 -0.01 2.52 16 4 N -0.46 -10.68 1.97 -114.82 -0.23 -10.90 16 5 C -0.36 -8.92 8.07 -14.93 -0.12 -9.04 16 6 H 0.10 2.62 7.61 -52.48 -0.40 2.22 16 7 C 0.08 2.07 5.09 -17.47 -0.09 1.98 16 8 N -0.84 -22.43 13.96 55.50 0.77 -21.66 16 9 Si 0.86 19.53 26.50 -169.99 -4.51 15.02 16 10 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 11 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 12 H -0.26 -5.78 5.91 56.52 0.33 -5.45 16 13 C 0.49 11.03 6.59 -10.99 -0.07 10.95 16 14 O -0.60 -14.43 16.09 5.55 0.09 -14.34 16 15 C -0.10 -1.91 2.36 -91.77 -0.22 -2.13 16 16 H 0.11 2.37 6.81 -51.93 -0.35 2.01 16 17 C -0.13 -2.30 9.11 37.16 0.34 -1.96 16 18 C 0.08 1.42 3.72 37.16 0.14 1.56 16 19 O -0.31 -5.28 9.62 -19.44 -0.19 -5.46 16 20 C 0.14 2.14 6.69 -39.22 -0.26 1.88 16 21 C -0.21 -2.98 9.04 -39.43 -0.36 -3.33 16 22 C -0.08 -0.97 10.04 -39.60 -0.40 -1.36 16 23 C -0.17 -1.84 10.04 -39.56 -0.40 -2.23 16 24 C -0.08 -0.93 10.04 -39.61 -0.40 -1.33 16 25 C -0.16 -2.08 9.99 -39.43 -0.39 -2.48 16 26 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 27 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 30 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 31 H 0.06 1.33 7.58 -51.93 -0.39 0.94 16 32 H 0.06 1.42 5.18 -51.93 -0.27 1.15 16 33 H 0.28 6.86 8.31 -40.82 -0.34 6.53 16 34 H 0.06 1.01 7.74 -51.92 -0.40 0.60 16 35 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.06 1.16 7.91 -51.93 -0.41 0.75 16 37 H 0.06 1.08 7.65 -51.93 -0.40 0.68 16 38 H 0.07 1.22 7.55 -51.93 -0.39 0.82 16 39 H 0.13 1.82 6.30 -52.48 -0.33 1.49 16 40 H 0.12 1.17 8.06 -52.49 -0.42 0.74 16 41 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 42 H 0.13 1.04 8.06 -52.49 -0.42 0.61 16 43 H 0.13 1.55 8.06 -52.49 -0.42 1.13 16 LS Contribution 352.50 15.07 5.31 5.31 Total: -1.00 -27.97 352.50 -7.56 -35.53 By element: Atomic # 1 Polarization: 12.88 SS G_CDS: -6.78 Total: 6.10 kcal Atomic # 6 Polarization: -7.56 SS G_CDS: -2.04 Total: -9.60 kcal Atomic # 7 Polarization: -33.11 SS G_CDS: 0.55 Total: -32.56 kcal Atomic # 8 Polarization: -19.71 SS G_CDS: -0.10 Total: -19.81 kcal Atomic # 14 Polarization: 19.53 SS G_CDS: -4.51 Total: 15.02 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -27.97 -7.56 -35.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348634916.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.215 kcal (2) G-P(sol) polarization free energy of solvation -27.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds