Wall clock time and date at job start Tue Mar 31 2020 06:46:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53002 * 109.47252 * 2 1 4 4 N 1.46491 * 109.47101 * 180.02562 * 3 2 1 5 5 C 1.37103 * 119.99832 * 92.60325 * 4 3 2 6 6 H 1.08006 * 119.99947 * 226.38596 * 5 4 3 7 7 C 1.38947 * 120.00342 * 46.39153 * 5 4 3 8 8 N 1.31407 * 120.00139 * 207.94497 * 7 5 4 9 9 Si 1.86801 * 119.99737 * 27.94032 * 7 5 4 10 10 H 1.48500 * 109.47019 * 94.16727 * 9 7 5 11 11 H 1.48503 * 109.47087 * 214.16894 * 9 7 5 12 12 H 1.48499 * 109.47312 * 334.16755 * 9 7 5 13 13 C 1.34782 * 120.00322 * 272.59891 * 4 3 2 14 14 O 1.21286 * 119.99531 * 4.84527 * 13 4 3 15 15 C 1.50694 * 120.00142 * 184.84309 * 13 4 3 16 16 H 1.08999 * 109.47483 * 23.08804 * 15 13 4 17 17 C 1.53003 * 109.46981 * 263.09173 * 15 13 4 18 18 C 1.53001 * 109.47320 * 143.09148 * 15 13 4 19 19 O 1.42893 * 109.47493 * 184.99782 * 18 15 13 20 20 C 1.35903 * 117.00055 * 179.97438 * 19 18 15 21 21 C 1.38723 * 120.05578 * 359.72957 * 20 19 18 22 22 C 1.38151 * 119.94497 * 179.74321 * 21 20 19 23 23 C 1.38266 * 120.05243 * 0.50757 * 22 21 20 24 24 C 1.38271 * 120.11195 * 359.76680 * 23 22 21 25 25 C 1.38139 * 120.05395 * 359.97438 * 24 23 22 26 26 H 1.08991 * 109.47147 * 59.99605 * 1 2 3 27 27 H 1.08999 * 109.46758 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.46447 * 299.99594 * 1 2 3 29 29 H 1.09004 * 109.46840 * 240.00329 * 2 1 3 30 30 H 1.08994 * 109.47615 * 120.00609 * 2 1 3 31 31 H 1.08997 * 109.46646 * 60.00131 * 3 2 1 32 32 H 1.08997 * 109.46827 * 300.00687 * 3 2 1 33 33 H 0.97000 * 119.99882 * 180.02562 * 8 7 5 34 34 H 1.09007 * 109.47074 * 183.03697 * 17 15 13 35 35 H 1.09007 * 109.47022 * 303.03097 * 17 15 13 36 36 H 1.08992 * 109.47223 * 63.03318 * 17 15 13 37 37 H 1.09003 * 109.46480 * 305.00232 * 18 15 13 38 38 H 1.09006 * 109.46796 * 64.99710 * 18 15 13 39 39 H 1.08007 * 120.03022 * 359.97438 * 21 20 19 40 40 H 1.07996 * 119.97140 * 180.27309 * 22 21 20 41 41 H 1.07997 * 119.94219 * 179.74658 * 23 22 21 42 42 H 1.07995 * 119.97176 * 179.97438 * 24 23 22 43 43 H 1.07999 * 120.02669 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1900 1.4966 -1.1870 6 1 5.0187 0.8266 -1.3632 7 6 3.8182 2.4132 -2.1628 8 7 4.0432 2.1509 -3.4306 9 14 2.9985 4.0185 -1.6723 10 1 4.0280 5.0811 -1.5442 11 1 2.0116 4.4081 -2.7114 12 1 2.3042 3.8425 -0.3715 13 6 4.1795 1.3893 1.1651 14 8 3.5767 1.2530 2.2087 15 6 5.6824 1.4993 1.1718 16 1 6.0135 2.0090 0.2670 17 6 6.2960 0.0985 1.2215 18 6 6.1301 2.2960 2.3988 19 8 7.5433 2.5002 2.3446 20 6 8.1058 3.1965 3.3672 21 6 7.3130 3.6782 4.3987 22 6 7.8879 4.3812 5.4398 23 6 9.2508 4.6138 5.4489 24 6 10.0424 4.1396 4.4191 25 6 9.4730 3.4316 3.3785 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3632 0.5138 0.8900 29 1 1.8934 -0.5138 -0.8901 30 1 1.8935 -0.5139 0.8898 31 1 1.6768 1.9562 0.8900 32 1 1.6767 1.9563 -0.8899 33 1 3.7840 2.7910 -4.1117 34 1 7.3814 0.1792 1.2807 35 1 5.9226 -0.4307 2.0983 36 1 6.0210 -0.4507 0.3211 37 1 5.6236 3.2612 2.4098 38 1 5.8774 1.7427 3.3033 39 1 6.2477 3.5006 4.3897 40 1 7.2717 4.7525 6.2452 41 1 9.6978 5.1670 6.2616 42 1 11.1066 4.3230 4.4283 43 1 10.0917 3.0618 2.5742 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348634916.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:20 Heat of formation + Delta-G solvation = -71.424094 kcal Electronic energy + Delta-G solvation = -23442.303859 eV Core-core repulsion = 20066.050717 eV Total energy + Delta-G solvation = -3376.253142 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.34289 -40.66999 -38.44226 -37.16751 -35.10703 -34.36140 -33.35800 -31.92729 -30.67292 -27.84697 -27.74171 -26.81935 -24.24949 -23.42425 -22.84165 -22.17337 -20.70298 -19.45550 -18.56703 -17.99599 -17.26792 -16.93716 -16.81245 -16.64923 -16.03657 -15.73887 -15.58512 -15.24412 -14.75845 -14.65804 -14.54464 -14.31423 -14.14631 -13.85065 -13.50205 -13.27444 -13.09775 -13.03505 -12.70228 -12.60212 -12.53631 -12.46443 -12.17022 -12.10210 -11.82449 -11.73362 -11.63235 -11.51438 -11.09288 -10.46238 -9.94495 -9.62343 -9.16616 -8.58801 -6.21039 0.40047 0.50382 1.20463 1.31418 1.40646 1.71939 2.08132 2.19295 2.67001 2.86029 3.00520 3.69792 3.85934 3.95811 3.98883 4.03380 4.12279 4.19021 4.26368 4.34435 4.43183 4.48757 4.52753 4.59320 4.59923 4.64971 4.71419 4.75117 4.90411 4.97017 5.07683 5.10876 5.12687 5.20662 5.26373 5.33242 5.40293 5.49912 5.52262 5.60257 5.88871 6.08369 6.23630 6.43164 6.94166 7.36033 7.74409 8.54871 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.018310 B = 0.004187 C = 0.003891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1528.820346 B = 6686.230308 C = 7193.762612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.126 4.126 3 C 0.110 3.890 4 N -0.466 5.466 5 C -0.353 4.353 6 H 0.078 0.922 7 C 0.050 3.950 8 N -0.878 5.878 9 Si 0.903 3.097 10 H -0.277 1.277 11 H -0.270 1.270 12 H -0.254 1.254 13 C 0.486 3.514 14 O -0.614 6.614 15 C -0.096 4.096 16 H 0.097 0.903 17 C -0.121 4.121 18 C 0.095 3.905 19 O -0.323 6.323 20 C 0.105 3.895 21 C -0.228 4.228 22 C -0.086 4.086 23 C -0.161 4.161 24 C -0.080 4.080 25 C -0.169 4.169 26 H 0.058 0.942 27 H 0.071 0.929 28 H 0.058 0.942 29 H 0.054 0.946 30 H 0.049 0.951 31 H 0.059 0.941 32 H 0.062 0.938 33 H 0.281 0.719 34 H 0.079 0.921 35 H 0.055 0.945 36 H 0.054 0.946 37 H 0.053 0.947 38 H 0.070 0.930 39 H 0.121 0.879 40 H 0.145 0.855 41 H 0.153 0.847 42 H 0.159 0.841 43 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.825 3.282 12.313 14.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.164 4.164 3 C -0.012 4.012 4 N -0.186 5.186 5 C -0.480 4.480 6 H 0.096 0.904 7 C -0.158 4.158 8 N -0.512 5.512 9 Si 0.726 3.274 10 H -0.203 1.203 11 H -0.195 1.195 12 H -0.178 1.178 13 C 0.276 3.724 14 O -0.500 6.500 15 C -0.117 4.117 16 H 0.115 0.885 17 C -0.179 4.179 18 C 0.019 3.981 19 O -0.237 6.237 20 C 0.060 3.940 21 C -0.246 4.246 22 C -0.104 4.104 23 C -0.179 4.179 24 C -0.098 4.098 25 C -0.187 4.187 26 H 0.077 0.923 27 H 0.090 0.910 28 H 0.078 0.922 29 H 0.073 0.927 30 H 0.068 0.932 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.091 0.909 34 H 0.098 0.902 35 H 0.074 0.926 36 H 0.073 0.927 37 H 0.071 0.929 38 H 0.088 0.912 39 H 0.139 0.861 40 H 0.162 0.838 41 H 0.170 0.830 42 H 0.176 0.824 43 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 5.564 3.172 12.389 13.947 hybrid contribution -0.637 0.695 -0.449 1.044 sum 4.927 3.868 11.940 13.483 Atomic orbital electron populations 1.21663 0.93309 1.02708 1.02079 1.21707 0.97456 0.96180 1.01094 1.21752 0.81408 0.97697 1.00386 1.43796 1.04886 1.64811 1.05094 1.18739 1.17856 1.20258 0.91114 0.90388 1.25861 0.96028 0.99640 0.94241 1.69908 1.44944 1.35761 1.00614 0.86458 0.79398 0.81669 0.79856 1.20260 1.19521 1.17757 1.20631 0.89856 0.78872 0.83054 1.90515 1.71213 1.55689 1.32632 1.20917 0.92077 0.99457 0.99252 0.88466 1.21512 1.01359 0.93266 1.01742 1.22335 0.78311 0.99082 0.98374 1.85986 1.23490 1.70229 1.43990 1.19458 0.93761 0.93041 0.87762 1.21494 1.00362 1.05538 0.97236 1.21286 0.96089 0.95961 0.97084 1.21453 0.93465 1.02632 1.00380 1.21347 1.01357 0.94868 0.92209 1.20744 0.91437 1.04397 1.02134 0.92295 0.90996 0.92249 0.92749 0.93213 0.92210 0.91960 0.90877 0.90163 0.92587 0.92716 0.92892 0.91169 0.86070 0.83771 0.82958 0.82378 0.84647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.10 9.91 71.98 0.71 -3.38 16 2 C -0.13 -4.79 6.25 30.60 0.19 -4.60 16 3 C 0.11 4.78 3.59 86.38 0.31 5.09 16 4 N -0.47 -22.14 1.97 -635.56 -1.25 -23.39 16 5 C -0.35 -18.05 8.07 84.04 0.68 -17.37 16 6 H 0.08 4.28 7.61 -2.91 -0.02 4.25 16 7 C 0.05 2.55 5.09 84.93 0.43 2.98 16 8 N -0.88 -47.27 13.96 21.66 0.30 -46.97 16 9 Si 0.90 40.25 26.50 68.60 1.82 42.06 16 10 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 11 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 12 H -0.25 -11.16 5.91 99.48 0.59 -10.57 16 13 C 0.49 22.31 6.59 87.65 0.58 22.89 16 14 O -0.61 -29.80 16.09 -3.05 -0.05 -29.85 16 15 C -0.10 -3.86 2.36 -11.54 -0.03 -3.89 16 16 H 0.10 4.22 6.81 -2.39 -0.02 4.21 16 17 C -0.12 -4.32 9.11 71.98 0.66 -3.66 16 18 C 0.09 3.43 3.72 71.98 0.27 3.70 16 19 O -0.32 -11.18 9.62 -92.46 -0.89 -12.07 16 20 C 0.10 3.19 6.69 22.50 0.15 3.34 16 21 C -0.23 -6.35 9.04 22.37 0.20 -6.15 16 22 C -0.09 -1.88 10.04 22.26 0.22 -1.65 16 23 C -0.16 -2.96 10.04 22.28 0.22 -2.74 16 24 C -0.08 -1.54 10.04 22.25 0.22 -1.32 16 25 C -0.17 -4.25 9.99 22.37 0.22 -4.03 16 26 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 27 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 28 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 29 H 0.05 2.19 8.14 -2.38 -0.02 2.17 16 30 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 31 H 0.06 2.59 7.58 -2.39 -0.02 2.57 16 32 H 0.06 2.70 5.18 -2.39 -0.01 2.69 16 33 H 0.28 14.08 8.31 -92.71 -0.77 13.31 16 34 H 0.08 2.56 7.74 -2.38 -0.02 2.54 16 35 H 0.06 1.93 8.14 -2.38 -0.02 1.91 16 36 H 0.05 2.02 7.91 -2.39 -0.02 2.00 16 37 H 0.05 1.95 7.65 -2.39 -0.02 1.94 16 38 H 0.07 2.50 7.55 -2.38 -0.02 2.48 16 39 H 0.12 3.47 6.30 -2.91 -0.02 3.46 16 40 H 0.14 2.39 8.06 -2.91 -0.02 2.36 16 41 H 0.15 1.80 8.06 -2.91 -0.02 1.77 16 42 H 0.16 1.95 8.06 -2.91 -0.02 1.93 16 43 H 0.14 3.12 8.06 -2.91 -0.02 3.10 16 Total: -1.00 -60.24 352.50 5.84 -54.40 By element: Atomic # 1 Polarization: 25.72 SS G_CDS: 0.86 Total: 26.58 kcal Atomic # 6 Polarization: -15.82 SS G_CDS: 5.05 Total: -10.78 kcal Atomic # 7 Polarization: -69.40 SS G_CDS: -0.95 Total: -70.35 kcal Atomic # 8 Polarization: -40.98 SS G_CDS: -0.94 Total: -41.92 kcal Atomic # 14 Polarization: 40.25 SS G_CDS: 1.82 Total: 42.06 kcal Total: -60.24 5.84 -54.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348634916.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.026 kcal (2) G-P(sol) polarization free energy of solvation -60.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds