Wall clock time and date at job start Tue Mar 31 2020 06:46:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52991 * 109.47255 * 2 1 4 4 N 1.46496 * 109.47473 * 174.69558 * 3 2 1 5 5 C 1.37105 * 120.00297 * 263.86130 * 4 3 2 6 6 H 1.08001 * 119.99982 * 183.36538 * 5 4 3 7 7 C 1.38952 * 119.99778 * 3.08484 * 5 4 3 8 8 N 1.31414 * 119.99795 * 27.21054 * 7 5 4 9 9 Si 1.86796 * 120.00019 * 207.21820 * 7 5 4 10 10 H 1.48498 * 109.47376 * 89.99795 * 9 7 5 11 11 H 1.48503 * 109.47020 * 210.00097 * 9 7 5 12 12 H 1.48500 * 109.46945 * 329.99853 * 9 7 5 13 13 C 1.34777 * 120.00318 * 83.85449 * 4 3 2 14 14 O 1.21300 * 119.99565 * 357.18766 * 13 4 3 15 15 C 1.50699 * 120.00656 * 177.18803 * 13 4 3 16 16 H 1.09002 * 109.46640 * 318.20144 * 15 13 4 17 17 C 1.52996 * 109.46998 * 78.19531 * 15 13 4 18 18 C 1.52999 * 109.47254 * 198.19830 * 15 13 4 19 19 O 1.42897 * 109.46707 * 174.99758 * 18 15 13 20 20 C 1.35904 * 116.99776 * 180.02562 * 19 18 15 21 21 C 1.38735 * 120.05423 * 359.72229 * 20 19 18 22 22 C 1.38150 * 119.94058 * 179.74713 * 21 20 19 23 23 C 1.38261 * 120.05725 * 0.50770 * 22 21 20 24 24 C 1.38270 * 120.11120 * 359.77019 * 23 22 21 25 25 C 1.38147 * 120.05632 * 359.97438 * 24 23 22 26 26 H 1.09006 * 109.47228 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.46826 * 299.99585 * 1 2 3 28 28 H 1.08995 * 109.47249 * 59.99978 * 1 2 3 29 29 H 1.09000 * 109.46870 * 239.99630 * 2 1 3 30 30 H 1.09006 * 109.47096 * 120.00445 * 2 1 3 31 31 H 1.09007 * 109.47308 * 54.69623 * 3 2 1 32 32 H 1.08995 * 109.47230 * 294.69557 * 3 2 1 33 33 H 0.97003 * 119.99551 * 179.97438 * 8 7 5 34 34 H 1.09005 * 109.46986 * 180.88693 * 17 15 13 35 35 H 1.09003 * 109.47723 * 300.89134 * 17 15 13 36 36 H 1.09005 * 109.47138 * 60.89308 * 17 15 13 37 37 H 1.08994 * 109.47266 * 294.99717 * 18 15 13 38 38 H 1.09000 * 109.46997 * 54.99849 * 18 15 13 39 39 H 1.07997 * 120.02828 * 0.02562 * 21 20 19 40 40 H 1.07999 * 119.96675 * 180.28028 * 22 21 20 41 41 H 1.07997 * 119.94630 * 179.74265 * 23 22 21 42 42 H 1.08003 * 119.97227 * 179.97438 * 24 23 22 43 43 H 1.08001 * 120.02831 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.4994 1.4444 0.1277 5 6 4.0797 1.6087 1.3590 6 1 5.1547 1.6646 1.4462 7 6 3.2843 1.7089 2.4940 8 7 2.0991 1.1419 2.5179 9 14 3.8999 2.6499 3.9856 10 1 3.4910 4.0733 3.8764 11 1 3.3170 2.0606 5.2178 12 1 5.3810 2.5637 4.0486 13 6 4.2718 1.2847 -0.9652 14 8 3.7589 1.0883 -2.0468 15 6 5.7724 1.3501 -0.8436 16 1 6.0475 2.1652 -0.1742 17 6 6.2964 0.0280 -0.2795 18 6 6.3858 1.5945 -2.2238 19 8 7.7976 1.7725 -2.0928 20 6 8.4990 2.0017 -3.2341 21 6 7.8427 2.0485 -4.4555 22 6 8.5574 2.2868 -5.6135 23 6 9.9269 2.4682 -5.5572 24 6 10.5841 2.4163 -4.3418 25 6 9.8733 2.1835 -3.1803 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 1.6012 1.9830 0.8387 32 1 1.7564 1.9281 -0.9336 33 1 1.5440 1.2116 3.3104 34 1 7.3803 0.0810 -0.1767 35 1 5.8474 -0.1539 0.6970 36 1 6.0350 -0.7851 -0.9568 37 1 6.1858 0.7377 -2.8672 38 1 5.9460 2.4896 -2.6635 39 1 6.7735 1.9031 -4.5004 40 1 8.0462 2.3278 -6.5640 41 1 10.4843 2.6503 -6.4641 42 1 11.6540 2.5580 -4.3004 43 1 10.3872 2.1427 -2.2312 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348634917.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:24 Heat of formation + Delta-G solvation = -50.276496 kcal Electronic energy + Delta-G solvation = -23403.318097 eV Core-core repulsion = 20027.981984 eV Total energy + Delta-G solvation = -3375.336113 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.01614 -38.86809 -37.25730 -35.30641 -33.29801 -32.17235 -31.36809 -30.93772 -29.61308 -26.41034 -25.87092 -24.77353 -22.87891 -22.32855 -21.34946 -20.22581 -18.96639 -18.22216 -16.74667 -16.46912 -15.80536 -15.51296 -15.45576 -14.51772 -14.40480 -14.16925 -13.93352 -13.66206 -13.42428 -13.19992 -12.92141 -12.84793 -12.29485 -12.18732 -11.78355 -11.57577 -11.51851 -11.38482 -11.18060 -10.97593 -10.91367 -10.73695 -10.49282 -10.37319 -10.35647 -10.28434 -10.13801 -9.53290 -8.98622 -8.85412 -8.39079 -8.09703 -7.87879 -6.48754 -3.89139 1.35883 1.49768 3.06266 3.19147 3.19946 3.35141 3.80793 3.82999 4.03903 4.80917 4.86472 4.92822 4.94534 5.14768 5.30213 5.38784 5.43257 5.52378 5.68554 5.73641 5.97019 6.02693 6.06330 6.11402 6.16923 6.19863 6.36994 6.39727 6.44948 6.48853 6.53412 6.59993 6.66804 6.82591 6.84274 6.87616 6.97134 7.04698 7.30975 7.43854 7.62233 7.62870 7.71886 8.35533 8.99374 9.46261 9.86801 10.50310 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.020132 B = 0.003871 C = 0.003378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1390.486482 B = 7231.821231 C = 8287.233403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.113 4.113 3 C 0.131 3.869 4 N -0.431 5.431 5 C -0.343 4.343 6 H 0.105 0.895 7 C 0.041 3.959 8 N -0.845 5.845 9 Si 0.911 3.089 10 H -0.277 1.277 11 H -0.284 1.284 12 H -0.269 1.269 13 C 0.455 3.545 14 O -0.615 6.615 15 C -0.089 4.089 16 H 0.095 0.905 17 C -0.136 4.136 18 C 0.082 3.918 19 O -0.314 6.314 20 C 0.140 3.860 21 C -0.210 4.210 22 C -0.081 4.081 23 C -0.169 4.169 24 C -0.084 4.084 25 C -0.159 4.159 26 H 0.038 0.962 27 H 0.054 0.946 28 H 0.036 0.964 29 H 0.035 0.965 30 H 0.082 0.918 31 H 0.106 0.894 32 H 0.034 0.966 33 H 0.269 0.731 34 H 0.057 0.943 35 H 0.075 0.925 36 H 0.049 0.951 37 H 0.068 0.932 38 H 0.063 0.937 39 H 0.132 0.868 40 H 0.122 0.878 41 H 0.119 0.881 42 H 0.125 0.875 43 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.232 1.432 -7.143 11.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.151 4.151 3 C 0.008 3.992 4 N -0.147 5.147 5 C -0.470 4.470 6 H 0.123 0.877 7 C -0.165 4.165 8 N -0.482 5.482 9 Si 0.737 3.263 10 H -0.203 1.203 11 H -0.210 1.210 12 H -0.193 1.193 13 C 0.243 3.757 14 O -0.503 6.503 15 C -0.111 4.111 16 H 0.113 0.887 17 C -0.194 4.194 18 C 0.007 3.993 19 O -0.227 6.227 20 C 0.094 3.906 21 C -0.229 4.229 22 C -0.099 4.099 23 C -0.187 4.187 24 C -0.102 4.102 25 C -0.178 4.178 26 H 0.057 0.943 27 H 0.074 0.926 28 H 0.056 0.944 29 H 0.054 0.946 30 H 0.100 0.900 31 H 0.124 0.876 32 H 0.053 0.947 33 H 0.080 0.920 34 H 0.076 0.924 35 H 0.094 0.906 36 H 0.068 0.932 37 H 0.087 0.913 38 H 0.081 0.919 39 H 0.150 0.850 40 H 0.140 0.860 41 H 0.137 0.863 42 H 0.143 0.857 43 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 8.830 1.296 -7.275 11.514 hybrid contribution 0.015 0.432 0.733 0.851 sum 8.845 1.728 -6.542 11.136 Atomic orbital electron populations 1.21578 0.97354 0.99807 1.00577 1.21589 0.94025 0.98323 1.01172 1.21533 0.80214 0.97171 1.00257 1.43808 1.05367 1.59526 1.05948 1.19742 0.93669 1.50604 0.82961 0.87693 1.25163 0.95831 0.96488 0.98998 1.70185 1.11373 1.37057 1.29559 0.86187 0.79397 0.80221 0.80505 1.20289 1.21026 1.19339 1.19556 0.87610 0.83897 0.84647 1.90528 1.75160 1.56873 1.27760 1.20900 0.94048 1.00930 0.95197 0.88656 1.21664 1.00409 0.95116 1.02164 1.22640 0.76378 1.01506 0.98746 1.86026 1.21953 1.85380 1.29377 1.19107 0.91691 0.94194 0.85586 1.21436 1.01143 1.07853 0.92431 1.20952 0.94139 0.97127 0.97675 1.20997 0.94634 1.05290 0.97802 1.20915 0.99510 0.97969 0.91856 1.20459 0.91234 1.06576 0.99501 0.94324 0.92641 0.94436 0.94626 0.89960 0.87629 0.94743 0.92029 0.92419 0.90583 0.93212 0.91345 0.91900 0.85045 0.86026 0.86290 0.85720 0.85339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.55 9.91 37.16 0.37 -2.19 16 2 C -0.11 -2.53 5.67 -26.73 -0.15 -2.69 16 3 C 0.13 3.13 4.52 -4.05 -0.02 3.11 16 4 N -0.43 -10.53 2.64 -114.81 -0.30 -10.84 16 5 C -0.34 -8.26 8.37 -14.93 -0.12 -8.38 16 6 H 0.11 2.42 5.45 -52.49 -0.29 2.13 16 7 C 0.04 0.97 4.94 -17.47 -0.09 0.88 16 8 N -0.84 -20.33 8.92 55.50 0.50 -19.83 16 9 Si 0.91 18.62 29.63 -169.99 -5.04 13.58 16 10 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 11 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 12 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 13 C 0.45 10.75 6.78 -10.99 -0.07 10.68 16 14 O -0.61 -15.85 15.82 5.54 0.09 -15.76 16 15 C -0.09 -1.77 2.11 -91.77 -0.19 -1.97 16 16 H 0.10 1.88 6.94 -51.93 -0.36 1.52 16 17 C -0.14 -2.49 8.80 37.16 0.33 -2.16 16 18 C 0.08 1.48 3.48 37.16 0.13 1.61 16 19 O -0.31 -5.32 9.69 -19.44 -0.19 -5.50 16 20 C 0.14 2.14 6.69 -39.22 -0.26 1.88 16 21 C -0.21 -2.99 9.04 -39.43 -0.36 -3.34 16 22 C -0.08 -0.97 10.04 -39.61 -0.40 -1.37 16 23 C -0.17 -1.83 10.04 -39.56 -0.40 -2.23 16 24 C -0.08 -0.93 10.04 -39.60 -0.40 -1.33 16 25 C -0.16 -2.08 9.99 -39.43 -0.39 -2.47 16 26 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 27 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 28 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.03 0.83 8.13 -51.93 -0.42 0.41 16 30 H 0.08 2.01 6.96 -51.93 -0.36 1.65 16 31 H 0.11 2.60 5.52 -51.93 -0.29 2.32 16 32 H 0.03 0.83 7.66 -51.93 -0.40 0.43 16 33 H 0.27 6.17 8.31 -40.82 -0.34 5.83 16 34 H 0.06 0.94 7.85 -51.93 -0.41 0.54 16 35 H 0.08 1.48 6.67 -51.93 -0.35 1.13 16 36 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 37 H 0.07 1.25 7.58 -51.93 -0.39 0.85 16 38 H 0.06 1.14 7.67 -51.93 -0.40 0.74 16 39 H 0.13 1.89 6.30 -52.49 -0.33 1.56 16 40 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 41 H 0.12 0.99 8.06 -52.49 -0.42 0.56 16 42 H 0.12 1.02 8.06 -52.48 -0.42 0.60 16 43 H 0.13 1.51 8.06 -52.49 -0.42 1.09 16 LS Contribution 348.27 15.07 5.25 5.25 Total: -1.00 -26.96 348.27 -8.23 -35.19 By element: Atomic # 1 Polarization: 14.39 SS G_CDS: -6.51 Total: 7.88 kcal Atomic # 6 Polarization: -7.93 SS G_CDS: -2.03 Total: -9.96 kcal Atomic # 7 Polarization: -30.86 SS G_CDS: 0.19 Total: -30.67 kcal Atomic # 8 Polarization: -21.17 SS G_CDS: -0.10 Total: -21.27 kcal Atomic # 14 Polarization: 18.62 SS G_CDS: -5.04 Total: 13.58 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -26.96 -8.23 -35.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348634917.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.087 kcal (2) G-P(sol) polarization free energy of solvation -26.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds