Wall clock time and date at job start Tue Mar 31 2020 06:46:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52991 * 109.47255 * 2 1 4 4 N 1.46496 * 109.47473 * 174.69558 * 3 2 1 5 5 C 1.37105 * 120.00297 * 263.86130 * 4 3 2 6 6 H 1.08001 * 119.99982 * 183.36538 * 5 4 3 7 7 C 1.38952 * 119.99778 * 3.08484 * 5 4 3 8 8 N 1.31414 * 119.99795 * 27.21054 * 7 5 4 9 9 Si 1.86796 * 120.00019 * 207.21820 * 7 5 4 10 10 H 1.48498 * 109.47376 * 89.99795 * 9 7 5 11 11 H 1.48503 * 109.47020 * 210.00097 * 9 7 5 12 12 H 1.48500 * 109.46945 * 329.99853 * 9 7 5 13 13 C 1.34777 * 120.00318 * 83.85449 * 4 3 2 14 14 O 1.21300 * 119.99565 * 357.18766 * 13 4 3 15 15 C 1.50699 * 120.00656 * 177.18803 * 13 4 3 16 16 H 1.09002 * 109.46640 * 318.20144 * 15 13 4 17 17 C 1.52996 * 109.46998 * 78.19531 * 15 13 4 18 18 C 1.52999 * 109.47254 * 198.19830 * 15 13 4 19 19 O 1.42897 * 109.46707 * 174.99758 * 18 15 13 20 20 C 1.35904 * 116.99776 * 180.02562 * 19 18 15 21 21 C 1.38735 * 120.05423 * 359.72229 * 20 19 18 22 22 C 1.38150 * 119.94058 * 179.74713 * 21 20 19 23 23 C 1.38261 * 120.05725 * 0.50770 * 22 21 20 24 24 C 1.38270 * 120.11120 * 359.77019 * 23 22 21 25 25 C 1.38147 * 120.05632 * 359.97438 * 24 23 22 26 26 H 1.09006 * 109.47228 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.46826 * 299.99585 * 1 2 3 28 28 H 1.08995 * 109.47249 * 59.99978 * 1 2 3 29 29 H 1.09000 * 109.46870 * 239.99630 * 2 1 3 30 30 H 1.09006 * 109.47096 * 120.00445 * 2 1 3 31 31 H 1.09007 * 109.47308 * 54.69623 * 3 2 1 32 32 H 1.08995 * 109.47230 * 294.69557 * 3 2 1 33 33 H 0.97003 * 119.99551 * 179.97438 * 8 7 5 34 34 H 1.09005 * 109.46986 * 180.88693 * 17 15 13 35 35 H 1.09003 * 109.47723 * 300.89134 * 17 15 13 36 36 H 1.09005 * 109.47138 * 60.89308 * 17 15 13 37 37 H 1.08994 * 109.47266 * 294.99717 * 18 15 13 38 38 H 1.09000 * 109.46997 * 54.99849 * 18 15 13 39 39 H 1.07997 * 120.02828 * 0.02562 * 21 20 19 40 40 H 1.07999 * 119.96675 * 180.28028 * 22 21 20 41 41 H 1.07997 * 119.94630 * 179.74265 * 23 22 21 42 42 H 1.08003 * 119.97227 * 179.97438 * 24 23 22 43 43 H 1.08001 * 120.02831 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.4994 1.4444 0.1277 5 6 4.0797 1.6087 1.3590 6 1 5.1547 1.6646 1.4462 7 6 3.2843 1.7089 2.4940 8 7 2.0991 1.1419 2.5179 9 14 3.8999 2.6499 3.9856 10 1 3.4910 4.0733 3.8764 11 1 3.3170 2.0606 5.2178 12 1 5.3810 2.5637 4.0486 13 6 4.2718 1.2847 -0.9652 14 8 3.7589 1.0883 -2.0468 15 6 5.7724 1.3501 -0.8436 16 1 6.0475 2.1652 -0.1742 17 6 6.2964 0.0280 -0.2795 18 6 6.3858 1.5945 -2.2238 19 8 7.7976 1.7725 -2.0928 20 6 8.4990 2.0017 -3.2341 21 6 7.8427 2.0485 -4.4555 22 6 8.5574 2.2868 -5.6135 23 6 9.9269 2.4682 -5.5572 24 6 10.5841 2.4163 -4.3418 25 6 9.8733 2.1835 -3.1803 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 1.6012 1.9830 0.8387 32 1 1.7564 1.9281 -0.9336 33 1 1.5440 1.2116 3.3104 34 1 7.3803 0.0810 -0.1767 35 1 5.8474 -0.1539 0.6970 36 1 6.0350 -0.7851 -0.9568 37 1 6.1858 0.7377 -2.8672 38 1 5.9460 2.4896 -2.6635 39 1 6.7735 1.9031 -4.5004 40 1 8.0462 2.3278 -6.5640 41 1 10.4843 2.6503 -6.4641 42 1 11.6540 2.5580 -4.3004 43 1 10.3872 2.1427 -2.2312 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348634917.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:23 Heat of formation + Delta-G solvation = -62.564460 kcal Electronic energy + Delta-G solvation = -23403.850943 eV Core-core repulsion = 20027.981984 eV Total energy + Delta-G solvation = -3375.868959 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.27192 -40.54311 -38.42343 -37.15230 -34.94662 -33.92635 -33.15480 -31.91463 -30.65834 -27.89143 -27.57633 -26.59308 -24.20364 -23.40500 -22.71670 -21.91869 -20.78467 -19.44458 -18.50641 -18.03945 -16.96898 -16.87137 -16.68477 -16.19437 -16.04724 -15.68909 -15.40243 -15.28611 -14.67071 -14.60558 -14.30519 -14.23619 -13.85351 -13.53849 -13.46096 -13.15741 -13.02148 -12.71135 -12.56571 -12.45707 -12.44878 -12.19599 -12.13493 -12.05362 -12.01373 -11.70562 -11.62089 -11.37854 -10.72968 -10.26834 -9.93834 -9.77180 -9.15791 -8.31665 -5.78212 0.40649 0.51102 1.41138 1.51773 1.60181 1.95490 2.04730 2.34024 2.86691 3.08252 3.12208 3.72721 3.90031 3.97468 4.03673 4.12164 4.27305 4.33032 4.39389 4.45285 4.51786 4.54823 4.61158 4.63734 4.69782 4.76686 4.83838 4.98984 5.06584 5.09101 5.11637 5.21772 5.27788 5.30767 5.40703 5.47710 5.51196 5.58768 5.60924 5.74058 5.84383 5.89742 6.43627 6.48518 7.12470 7.58658 7.99715 8.68052 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.020132 B = 0.003871 C = 0.003378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1390.486482 B = 7231.821231 C = 8287.233403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.101 4.101 3 C 0.132 3.868 4 N -0.440 5.440 5 C -0.364 4.364 6 H 0.113 0.887 7 C 0.007 3.993 8 N -0.861 5.861 9 Si 0.977 3.023 10 H -0.279 1.279 11 H -0.283 1.283 12 H -0.262 1.262 13 C 0.442 3.558 14 O -0.644 6.644 15 C -0.083 4.083 16 H 0.096 0.904 17 C -0.125 4.125 18 C 0.100 3.900 19 O -0.323 6.323 20 C 0.105 3.895 21 C -0.229 4.229 22 C -0.087 4.087 23 C -0.161 4.161 24 C -0.080 4.080 25 C -0.167 4.167 26 H 0.058 0.942 27 H 0.055 0.945 28 H 0.048 0.952 29 H 0.018 0.982 30 H 0.061 0.939 31 H 0.099 0.901 32 H 0.024 0.976 33 H 0.273 0.727 34 H 0.079 0.921 35 H 0.062 0.938 36 H 0.045 0.955 37 H 0.060 0.940 38 H 0.053 0.947 39 H 0.118 0.882 40 H 0.143 0.857 41 H 0.153 0.847 42 H 0.160 0.840 43 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.120 1.969 -7.337 13.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.139 4.139 3 C 0.009 3.991 4 N -0.155 5.155 5 C -0.491 4.491 6 H 0.130 0.870 7 C -0.198 4.198 8 N -0.498 5.498 9 Si 0.801 3.199 10 H -0.205 1.205 11 H -0.209 1.209 12 H -0.186 1.186 13 C 0.231 3.769 14 O -0.535 6.535 15 C -0.105 4.105 16 H 0.114 0.886 17 C -0.183 4.183 18 C 0.024 3.976 19 O -0.237 6.237 20 C 0.060 3.940 21 C -0.247 4.247 22 C -0.105 4.105 23 C -0.179 4.179 24 C -0.098 4.098 25 C -0.186 4.186 26 H 0.077 0.923 27 H 0.074 0.926 28 H 0.067 0.933 29 H 0.036 0.964 30 H 0.079 0.921 31 H 0.117 0.883 32 H 0.042 0.958 33 H 0.083 0.917 34 H 0.098 0.902 35 H 0.081 0.919 36 H 0.064 0.936 37 H 0.078 0.922 38 H 0.072 0.928 39 H 0.136 0.864 40 H 0.161 0.839 41 H 0.170 0.830 42 H 0.177 0.823 43 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 10.727 1.830 -7.467 13.198 hybrid contribution -0.527 0.269 0.711 0.925 sum 10.199 2.099 -6.757 12.413 Atomic orbital electron populations 1.21496 0.94426 1.01351 1.01114 1.21433 0.96563 0.96836 0.99102 1.21513 0.80535 0.97855 0.99219 1.44045 1.05653 1.59325 1.06515 1.20025 0.94280 1.51709 0.83047 0.86985 1.25906 0.96107 0.96509 1.01256 1.70249 1.12124 1.37063 1.30395 0.85180 0.79152 0.78413 0.77168 1.20458 1.20895 1.18612 1.20191 0.89231 0.83404 0.84056 1.90490 1.76100 1.58172 1.28705 1.20809 0.91498 1.01730 0.96423 0.88581 1.21572 1.01575 0.94053 1.01060 1.22262 0.77487 1.00693 0.97157 1.85966 1.20834 1.86250 1.30643 1.19459 0.92632 0.96589 0.85297 1.21494 1.00841 1.09112 0.93290 1.21276 0.95039 0.96511 0.97676 1.21448 0.94196 1.03141 0.99138 1.21359 1.01155 0.96233 0.91008 1.20745 0.90361 1.06456 1.01001 0.92294 0.92619 0.93308 0.96351 0.92070 0.88294 0.95782 0.91713 0.90180 0.91852 0.93613 0.92191 0.92829 0.86405 0.83940 0.82959 0.82263 0.84428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.69 9.91 71.98 0.71 -3.98 16 2 C -0.10 -4.63 5.67 30.59 0.17 -4.46 16 3 C 0.13 6.47 4.52 86.38 0.39 6.86 16 4 N -0.44 -22.13 2.64 -635.54 -1.68 -23.81 16 5 C -0.36 -17.73 8.37 84.04 0.70 -17.03 16 6 H 0.11 5.18 5.45 -2.91 -0.02 5.16 16 7 C 0.01 0.32 4.94 84.93 0.42 0.74 16 8 N -0.86 -41.56 8.92 21.66 0.19 -41.36 16 9 Si 0.98 37.78 29.63 68.60 2.03 39.81 16 10 H -0.28 -10.84 7.11 99.48 0.71 -10.13 16 11 H -0.28 -10.86 7.11 99.48 0.71 -10.15 16 12 H -0.26 -9.80 7.11 99.48 0.71 -9.10 16 13 C 0.44 21.62 6.78 87.66 0.59 22.21 16 14 O -0.64 -34.56 15.82 -3.09 -0.05 -34.61 16 15 C -0.08 -3.39 2.11 -11.54 -0.02 -3.41 16 16 H 0.10 3.86 6.94 -2.39 -0.02 3.84 16 17 C -0.12 -4.62 8.80 71.98 0.63 -3.99 16 18 C 0.10 3.71 3.48 71.98 0.25 3.96 16 19 O -0.32 -11.09 9.69 -92.47 -0.90 -11.98 16 20 C 0.11 3.20 6.69 22.51 0.15 3.35 16 21 C -0.23 -6.55 9.04 22.37 0.20 -6.34 16 22 C -0.09 -1.94 10.04 22.25 0.22 -1.72 16 23 C -0.16 -2.96 10.04 22.28 0.22 -2.74 16 24 C -0.08 -1.50 10.04 22.26 0.22 -1.28 16 25 C -0.17 -4.11 9.99 22.37 0.22 -3.89 16 26 H 0.06 1.94 8.14 -2.38 -0.02 1.92 16 27 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 28 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 29 H 0.02 0.87 8.13 -2.39 -0.02 0.85 16 30 H 0.06 3.06 6.96 -2.38 -0.02 3.04 16 31 H 0.10 4.98 5.52 -2.38 -0.01 4.97 16 32 H 0.02 1.20 7.66 -2.39 -0.02 1.18 16 33 H 0.27 12.42 8.31 -92.71 -0.77 11.65 16 34 H 0.08 2.58 7.85 -2.38 -0.02 2.56 16 35 H 0.06 2.49 6.67 -2.39 -0.02 2.47 16 36 H 0.04 1.69 8.14 -2.38 -0.02 1.67 16 37 H 0.06 2.30 7.58 -2.39 -0.02 2.28 16 38 H 0.05 2.05 7.67 -2.39 -0.02 2.03 16 39 H 0.12 3.58 6.30 -2.91 -0.02 3.57 16 40 H 0.14 2.47 8.06 -2.91 -0.02 2.45 16 41 H 0.15 1.80 8.06 -2.91 -0.02 1.77 16 42 H 0.16 1.87 8.06 -2.91 -0.02 1.85 16 43 H 0.14 3.02 8.06 -2.91 -0.02 3.00 16 Total: -1.00 -58.75 348.27 5.70 -53.05 By element: Atomic # 1 Polarization: 29.62 SS G_CDS: 0.99 Total: 30.61 kcal Atomic # 6 Polarization: -16.82 SS G_CDS: 5.10 Total: -11.71 kcal Atomic # 7 Polarization: -63.69 SS G_CDS: -1.48 Total: -65.17 kcal Atomic # 8 Polarization: -45.65 SS G_CDS: -0.94 Total: -46.59 kcal Atomic # 14 Polarization: 37.78 SS G_CDS: 2.03 Total: 39.81 kcal Total: -58.75 5.70 -53.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348634917.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.510 kcal (2) G-P(sol) polarization free energy of solvation -58.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds