Wall clock time and date at job start Tue Mar 31 2020 06:28:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52992 * 109.47309 * 2 1 4 4 H 1.09000 * 109.47524 * 55.00403 * 3 2 1 5 5 C 1.53004 * 109.47179 * 174.99841 * 3 2 1 6 6 O 1.42907 * 109.46649 * 55.00276 * 5 3 2 7 7 N 1.46495 * 109.47812 * 295.00226 * 3 2 1 8 8 C 1.34769 * 120.00743 * 154.99686 * 7 3 2 9 9 O 1.21290 * 119.99673 * 0.02562 * 8 7 3 10 10 C 1.50702 * 120.00629 * 180.02562 * 8 7 3 11 11 C 1.52998 * 109.47314 * 180.02562 * 10 8 7 12 12 H 1.08996 * 109.47071 * 55.00289 * 11 10 8 13 13 C 1.50697 * 109.47038 * 295.00230 * 11 10 8 14 14 H 1.07995 * 120.00170 * 325.84065 * 13 11 10 15 15 C 1.37879 * 119.99884 * 145.84953 * 13 11 10 16 16 N 1.31512 * 120.00381 * 6.11282 * 15 13 11 17 17 Si 1.86798 * 119.99786 * 186.11980 * 15 13 11 18 18 H 1.48504 * 109.47532 * 359.97438 * 17 15 13 19 19 H 1.48499 * 109.47576 * 119.99532 * 17 15 13 20 20 H 1.48506 * 109.46943 * 239.99402 * 17 15 13 21 21 C 1.50704 * 109.46822 * 175.00185 * 11 10 8 22 22 C 1.38232 * 119.99985 * 63.46948 * 21 11 10 23 23 C 1.38240 * 119.99852 * 179.78405 * 22 21 11 24 24 C 1.38238 * 119.99785 * 0.44287 * 23 22 21 25 25 C 1.38233 * 119.99961 * 359.81435 * 24 23 22 26 26 C 1.38233 * 119.99727 * 243.74072 * 21 11 10 27 27 H 1.08991 * 109.47505 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47175 * 59.99265 * 1 2 3 29 29 H 1.09000 * 109.46678 * 300.00230 * 1 2 3 30 30 H 1.09000 * 109.47175 * 120.00735 * 2 1 3 31 31 H 1.08997 * 109.46901 * 240.00237 * 2 1 3 32 32 H 1.08998 * 109.47205 * 175.00256 * 5 3 2 33 33 H 1.08998 * 109.47025 * 295.00612 * 5 3 2 34 34 H 0.96700 * 113.99197 * 179.97438 * 6 5 3 35 35 H 0.97003 * 119.99623 * 335.00243 * 7 3 2 36 36 H 1.09002 * 109.47008 * 300.00722 * 10 8 7 37 37 H 1.09002 * 109.46981 * 60.00096 * 10 8 7 38 38 H 0.96998 * 120.00365 * 180.02562 * 16 15 13 39 39 H 1.07999 * 120.00415 * 0.02562 * 22 21 11 40 40 H 1.07998 * 120.00121 * 180.27706 * 23 22 21 41 41 H 1.07997 * 119.99723 * 179.82975 * 24 23 22 42 42 H 1.08002 * 119.99834 * 179.97438 * 25 24 23 43 43 H 1.08005 * 120.00191 * 359.97438 * 26 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5649 1.4442 0.1258 6 8 4.1293 0.6402 -0.9122 7 7 1.6525 2.0975 -1.2517 8 6 1.5257 3.4384 -1.2995 9 8 1.7329 4.1029 -0.3061 10 6 1.1265 4.1123 -2.5870 11 6 1.0560 5.6252 -2.3702 12 1 2.0061 5.9797 -1.9706 13 6 -0.0486 5.9420 -1.3953 14 1 -0.9468 5.3425 -1.3835 15 6 0.0875 6.9973 -0.5184 16 7 1.1248 7.8003 -0.6118 17 14 -1.2013 7.2862 0.8025 18 1 -2.2606 6.2508 0.6956 19 1 -0.5644 7.2068 2.1416 20 1 -1.8041 8.6311 0.6201 21 6 0.7775 6.3084 -3.6843 22 6 -0.4115 6.0711 -4.3483 23 6 -0.6689 6.7013 -5.5515 24 6 0.2667 7.5616 -6.0951 25 6 1.4579 7.7947 -5.4337 26 6 1.7134 7.1679 -4.2284 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 0.5139 0.8900 30 1 1.8934 -0.5139 0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 3.9356 2.4653 0.0367 33 1 3.8499 1.0375 1.0960 34 1 5.0951 0.5961 -0.8942 35 1 1.4871 1.5662 -2.0462 36 1 1.8648 3.8899 -3.3575 37 1 0.1502 3.7441 -2.9022 38 1 1.2207 8.5425 0.0053 39 1 -1.1411 5.3965 -3.9252 40 1 -1.5997 6.5194 -6.0680 41 1 0.0668 8.0517 -7.0365 42 1 2.1890 8.4665 -5.8587 43 1 2.6441 7.3502 -3.7116 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356636843.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:06 Heat of formation + Delta-G solvation = -78.530763 kcal Electronic energy + Delta-G solvation = -23597.552182 eV Core-core repulsion = 20220.990872 eV Total energy + Delta-G solvation = -3376.561310 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.31745 -38.28414 -37.02252 -34.96047 -33.86261 -31.93099 -31.31893 -29.97192 -29.11069 -28.06118 -25.44327 -23.53251 -22.75036 -21.60895 -20.78023 -19.96362 -19.17521 -17.39155 -16.57575 -16.19801 -15.84485 -15.56864 -14.89206 -14.46175 -14.20335 -14.06869 -13.90721 -13.76458 -13.54240 -12.93441 -12.63849 -12.47000 -12.30215 -12.18716 -11.88481 -11.73468 -11.57572 -11.23411 -10.96239 -10.85160 -10.75984 -10.64801 -10.51214 -10.22062 -10.02295 -9.94295 -9.40276 -9.01177 -8.78806 -8.46408 -8.28456 -8.00833 -7.56573 -5.90125 -3.88966 2.32505 2.38562 3.38939 3.46141 3.48575 3.61774 3.78431 4.38200 4.54807 4.78898 4.81077 5.10252 5.18980 5.41742 5.45046 5.55890 5.68068 5.69526 5.75451 5.76491 5.86948 5.92305 5.96332 5.99102 6.16272 6.24202 6.26760 6.33091 6.36967 6.44912 6.58452 6.85956 6.95503 7.06215 7.09079 7.34508 7.48786 7.57356 7.62520 7.89950 7.98946 8.09156 8.22917 8.43086 9.10861 9.18339 9.72683 11.20193 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.012714 B = 0.005309 C = 0.004388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2201.807902 B = 5272.876375 C = 6379.162581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.123 4.123 3 C 0.150 3.850 4 H 0.096 0.904 5 C 0.062 3.938 6 O -0.569 6.569 7 N -0.736 5.736 8 C 0.513 3.487 9 O -0.501 6.501 10 C -0.122 4.122 11 C 0.080 3.920 12 H 0.071 0.929 13 C -0.489 4.489 14 H 0.050 0.950 15 C 0.078 3.922 16 N -0.882 5.882 17 Si 0.886 3.114 18 H -0.275 1.275 19 H -0.285 1.285 20 H -0.288 1.288 21 C -0.020 4.020 22 C -0.115 4.115 23 C -0.132 4.132 24 C -0.156 4.156 25 C -0.128 4.128 26 C -0.119 4.119 27 H 0.051 0.949 28 H 0.058 0.942 29 H 0.054 0.946 30 H 0.068 0.932 31 H 0.073 0.927 32 H 0.054 0.946 33 H 0.046 0.954 34 H 0.373 0.627 35 H 0.394 0.606 36 H 0.064 0.936 37 H 0.075 0.925 38 H 0.258 0.742 39 H 0.113 0.887 40 H 0.105 0.895 41 H 0.103 0.897 42 H 0.105 0.895 43 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.902 -12.726 -3.839 13.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.161 4.161 3 C 0.044 3.956 4 H 0.114 0.886 5 C -0.017 4.017 6 O -0.374 6.374 7 N -0.391 5.391 8 C 0.300 3.700 9 O -0.373 6.373 10 C -0.163 4.163 11 C 0.061 3.939 12 H 0.089 0.911 13 C -0.526 4.526 14 H 0.069 0.931 15 C -0.125 4.125 16 N -0.519 5.519 17 Si 0.715 3.285 18 H -0.200 1.200 19 H -0.211 1.211 20 H -0.214 1.214 21 C -0.021 4.021 22 C -0.134 4.134 23 C -0.150 4.150 24 C -0.174 4.174 25 C -0.146 4.146 26 C -0.137 4.137 27 H 0.070 0.930 28 H 0.077 0.923 29 H 0.073 0.927 30 H 0.087 0.913 31 H 0.091 0.909 32 H 0.072 0.928 33 H 0.064 0.936 34 H 0.219 0.781 35 H 0.227 0.773 36 H 0.083 0.917 37 H 0.094 0.906 38 H 0.067 0.933 39 H 0.131 0.869 40 H 0.123 0.877 41 H 0.122 0.878 42 H 0.123 0.877 43 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 2.491 -12.107 -3.142 12.754 hybrid contribution -0.234 0.241 0.628 0.712 sum 2.257 -11.866 -2.514 12.338 Atomic orbital electron populations 1.21783 0.95533 1.01159 1.02553 1.21666 0.96015 0.95545 1.02870 1.20925 0.91674 0.93463 0.89532 0.88575 1.22709 0.94951 0.94572 0.89437 1.86453 1.24839 1.72282 1.53838 1.46155 1.73071 1.07516 1.12375 1.20905 0.76519 0.80937 0.91636 1.90745 1.46964 1.63375 1.36206 1.21785 1.00810 1.00164 0.93516 1.17832 1.00802 0.86414 0.88842 0.91081 1.20715 1.01886 1.13764 1.16270 0.93144 1.24806 0.95162 0.95761 0.96790 1.69923 1.28910 1.16005 1.37063 0.86640 0.81784 0.77564 0.82512 1.19985 1.21091 1.21441 1.20746 0.92100 0.94730 0.94514 1.20945 0.97406 1.00601 0.94402 1.20971 0.98553 0.98575 0.96887 1.20787 0.95329 1.01193 1.00131 1.20978 0.97118 1.00265 0.96271 1.21084 0.99834 0.97943 0.94842 0.92983 0.92272 0.92692 0.91313 0.90869 0.92799 0.93552 0.78058 0.77311 0.91748 0.90646 0.93269 0.86926 0.87703 0.87843 0.87682 0.86889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 9.80 37.16 0.36 -1.31 16 2 C -0.12 -1.36 5.19 -26.73 -0.14 -1.50 16 3 C 0.15 2.09 2.37 -67.93 -0.16 1.92 16 4 H 0.10 1.54 7.58 -51.93 -0.39 1.14 16 5 C 0.06 0.80 6.85 37.16 0.25 1.06 16 6 O -0.57 -6.60 12.83 -35.23 -0.45 -7.05 16 7 N -0.74 -11.30 4.48 -53.81 -0.24 -11.54 16 8 C 0.51 10.26 7.54 -10.99 -0.08 10.18 16 9 O -0.50 -12.39 14.65 5.55 0.08 -12.31 16 10 C -0.12 -2.40 4.95 -27.88 -0.14 -2.54 16 11 C 0.08 1.93 1.67 -92.92 -0.16 1.78 16 12 H 0.07 1.97 6.98 -51.93 -0.36 1.61 16 13 C -0.49 -13.22 6.37 -34.44 -0.22 -13.44 16 14 H 0.05 1.36 7.82 -52.49 -0.41 0.95 16 15 C 0.08 2.21 5.45 -17.82 -0.10 2.12 16 16 N -0.88 -26.09 12.87 55.43 0.71 -25.38 16 17 Si 0.89 22.45 29.54 -169.99 -5.02 17.43 16 18 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 19 H -0.28 -7.28 7.11 56.52 0.40 -6.88 16 20 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 21 C -0.02 -0.45 4.77 -104.62 -0.50 -0.95 16 22 C -0.12 -2.36 8.86 -39.58 -0.35 -2.71 16 23 C -0.13 -2.40 10.05 -39.58 -0.40 -2.80 16 24 C -0.16 -2.76 10.05 -39.58 -0.40 -3.16 16 25 C -0.13 -2.40 10.05 -39.58 -0.40 -2.80 16 26 C -0.12 -2.55 9.67 -39.58 -0.38 -2.93 16 27 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.69 7.75 -51.93 -0.40 0.29 16 29 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.07 0.81 7.73 -51.93 -0.40 0.40 16 32 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.37 2.79 9.12 45.56 0.42 3.21 16 35 H 0.39 5.15 8.60 -40.82 -0.35 4.80 16 36 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 37 H 0.08 1.37 7.78 -51.93 -0.40 0.97 16 38 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 39 H 0.11 2.22 7.76 -52.49 -0.41 1.81 16 40 H 0.10 1.61 8.06 -52.49 -0.42 1.19 16 41 H 0.10 1.53 8.06 -52.49 -0.42 1.10 16 42 H 0.11 1.69 8.06 -52.49 -0.42 1.27 16 43 H 0.11 2.44 7.95 -52.48 -0.42 2.03 16 LS Contribution 359.71 15.07 5.42 5.42 Total: -1.00 -32.79 359.71 -8.37 -41.16 By element: Atomic # 1 Polarization: 15.43 SS G_CDS: -6.07 Total: 9.35 kcal Atomic # 6 Polarization: -14.29 SS G_CDS: -2.80 Total: -17.09 kcal Atomic # 7 Polarization: -37.39 SS G_CDS: 0.47 Total: -36.92 kcal Atomic # 8 Polarization: -18.99 SS G_CDS: -0.37 Total: -19.36 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.02 Total: 17.43 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -32.79 -8.37 -41.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356636843.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.370 kcal (2) G-P(sol) polarization free energy of solvation -32.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds