Wall clock time and date at job start Tue Mar 31 2020 06:28:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52998 * 109.47036 * 2 1 4 4 H 1.08999 * 109.47617 * 54.99796 * 3 2 1 5 5 C 1.53003 * 109.47328 * 175.00301 * 3 2 1 6 6 O 1.42895 * 109.47257 * 54.99621 * 5 3 2 7 7 N 1.46502 * 109.47125 * 294.99865 * 3 2 1 8 8 C 1.34779 * 120.00266 * 154.99889 * 7 3 2 9 9 O 1.21280 * 119.99930 * 0.02562 * 8 7 3 10 10 C 1.50695 * 120.00025 * 180.02562 * 8 7 3 11 11 C 1.53006 * 109.47193 * 179.97438 * 10 8 7 12 12 H 1.09002 * 109.47044 * 305.37358 * 11 10 8 13 13 C 1.50698 * 109.46841 * 65.36711 * 11 10 8 14 14 H 1.08002 * 119.99582 * 34.62465 * 13 11 10 15 15 C 1.37873 * 120.00205 * 214.62198 * 13 11 10 16 16 N 1.31515 * 120.00076 * 186.45305 * 15 13 11 17 17 Si 1.86801 * 119.99834 * 6.44810 * 15 13 11 18 18 H 1.48493 * 109.47022 * 85.01121 * 17 15 13 19 19 H 1.48505 * 109.46973 * 205.00836 * 17 15 13 20 20 H 1.48499 * 109.47324 * 325.00932 * 17 15 13 21 21 C 1.50693 * 109.47335 * 185.36850 * 11 10 8 22 22 C 1.38233 * 120.00204 * 296.36125 * 21 11 10 23 23 C 1.38232 * 120.00061 * 179.78540 * 22 21 11 24 24 C 1.38240 * 120.00143 * 0.44262 * 23 22 21 25 25 C 1.38232 * 119.99669 * 359.81150 * 24 23 22 26 26 C 1.38239 * 120.00377 * 359.97438 * 25 24 23 27 27 H 1.08997 * 109.47494 * 60.00115 * 1 2 3 28 28 H 1.09005 * 109.47351 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47199 * 299.99692 * 1 2 3 30 30 H 1.08996 * 109.47488 * 239.99915 * 2 1 3 31 31 H 1.09006 * 109.47516 * 119.99790 * 2 1 3 32 32 H 1.09000 * 109.46809 * 175.00287 * 5 3 2 33 33 H 1.09001 * 109.46684 * 294.99795 * 5 3 2 34 34 H 0.96703 * 113.99598 * 180.02562 * 6 5 3 35 35 H 0.97001 * 119.99872 * 335.00561 * 7 3 2 36 36 H 1.09002 * 109.47454 * 60.00127 * 10 8 7 37 37 H 1.08991 * 109.47441 * 300.00028 * 10 8 7 38 38 H 0.97003 * 119.99827 * 179.97438 * 16 15 13 39 39 H 1.08003 * 119.99734 * 359.97438 * 22 21 11 40 40 H 1.08006 * 120.00290 * 180.27527 * 23 22 21 41 41 H 1.08001 * 119.99861 * 179.82836 * 24 23 22 42 42 H 1.07999 * 119.99708 * 180.02562 * 25 24 23 43 43 H 1.07995 * 119.99920 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5648 1.4444 0.1256 6 8 4.1293 0.6405 -0.9121 7 7 1.6524 2.0975 -1.2518 8 6 1.5255 3.4384 -1.2997 9 8 1.7326 4.1029 -0.3065 10 6 1.1263 4.1120 -2.5872 11 6 1.0544 5.6249 -2.3703 12 1 0.3874 5.8410 -1.5357 13 6 2.4314 6.1543 -2.0629 14 1 3.2974 5.7107 -2.5315 15 6 2.5856 7.2048 -1.1834 16 7 3.7701 7.7497 -1.0112 17 14 1.1122 7.8541 -0.2364 18 1 0.9155 7.0418 0.9910 19 1 1.3510 9.2706 0.1404 20 1 -0.1013 7.7663 -1.0879 21 6 0.5288 6.2868 -3.6179 22 6 1.2508 6.2160 -4.7946 23 6 0.7665 6.8194 -5.9401 24 6 -0.4355 7.5015 -5.9067 25 6 -1.1550 7.5768 -4.7288 26 6 -0.6728 6.9696 -3.5843 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 3.9353 2.4656 0.0366 33 1 3.8498 1.0378 1.0960 34 1 5.0951 0.5958 -0.8937 35 1 1.4870 1.5660 -2.0463 36 1 0.1500 3.7438 -2.9025 37 1 1.8645 3.8898 -3.3576 38 1 3.8785 8.4891 -0.3927 39 1 2.1918 5.6867 -4.8196 40 1 1.3284 6.7604 -6.8605 41 1 -0.8125 7.9753 -6.8011 42 1 -2.0942 8.1093 -4.7029 43 1 -1.2352 7.0281 -2.6642 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356636844.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:08 Heat of formation + Delta-G solvation = -76.397120 kcal Electronic energy + Delta-G solvation = -23691.229044 eV Core-core repulsion = 20314.760255 eV Total energy + Delta-G solvation = -3376.468788 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.42976 -38.48705 -37.04431 -34.98307 -33.97968 -32.01370 -31.55751 -30.18009 -29.22992 -28.17868 -25.77328 -23.52485 -22.64056 -21.86245 -20.86971 -20.01948 -19.12781 -17.34669 -16.91294 -16.47860 -15.92526 -15.69964 -14.91832 -14.57391 -14.26625 -14.15114 -13.98049 -13.77357 -13.49315 -13.00317 -12.73691 -12.61415 -12.43538 -12.38845 -12.17551 -11.86687 -11.77533 -11.30519 -11.07885 -10.92776 -10.77477 -10.74026 -10.51683 -10.31968 -9.88867 -9.82991 -9.58472 -9.16880 -8.87081 -8.52820 -8.36328 -8.17829 -7.78687 -5.96500 -3.92594 2.12665 2.17721 3.44812 3.48748 3.50834 3.54637 3.72142 4.43248 4.55286 4.60882 4.78258 5.07712 5.13767 5.33368 5.46932 5.54376 5.57482 5.58571 5.62893 5.70505 5.71796 5.84051 5.90909 5.97534 6.02996 6.05671 6.12351 6.18528 6.27485 6.30327 6.36398 6.65422 6.72834 6.86568 6.98793 7.05684 7.17062 7.30341 7.60812 7.69588 7.75295 7.85347 8.13635 8.55520 9.02559 9.07235 9.69174 11.16469 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.014503 B = 0.005237 C = 0.004574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1930.135481 B = 5345.626297 C = 6119.437245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.124 4.124 3 C 0.151 3.849 4 H 0.095 0.905 5 C 0.061 3.939 6 O -0.570 6.570 7 N -0.734 5.734 8 C 0.515 3.485 9 O -0.507 6.507 10 C -0.118 4.118 11 C 0.056 3.944 12 H 0.049 0.951 13 C -0.485 4.485 14 H 0.070 0.930 15 C 0.085 3.915 16 N -0.900 5.900 17 Si 0.874 3.126 18 H -0.273 1.273 19 H -0.297 1.297 20 H -0.261 1.261 21 C -0.038 4.038 22 C -0.101 4.101 23 C -0.127 4.127 24 C -0.150 4.150 25 C -0.127 4.127 26 C -0.136 4.136 27 H 0.057 0.943 28 H 0.052 0.948 29 H 0.053 0.947 30 H 0.074 0.926 31 H 0.069 0.931 32 H 0.059 0.941 33 H 0.046 0.954 34 H 0.375 0.625 35 H 0.395 0.605 36 H 0.067 0.933 37 H 0.084 0.916 38 H 0.261 0.739 39 H 0.119 0.881 40 H 0.110 0.890 41 H 0.107 0.893 42 H 0.108 0.892 43 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.934 -13.193 -2.731 14.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.162 4.162 3 C 0.045 3.955 4 H 0.113 0.887 5 C -0.018 4.018 6 O -0.375 6.375 7 N -0.388 5.388 8 C 0.302 3.698 9 O -0.379 6.379 10 C -0.158 4.158 11 C 0.037 3.963 12 H 0.067 0.933 13 C -0.522 4.522 14 H 0.088 0.912 15 C -0.117 4.117 16 N -0.538 5.538 17 Si 0.702 3.298 18 H -0.199 1.199 19 H -0.224 1.224 20 H -0.186 1.186 21 C -0.039 4.039 22 C -0.119 4.119 23 C -0.146 4.146 24 C -0.168 4.168 25 C -0.145 4.145 26 C -0.154 4.154 27 H 0.076 0.924 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.092 0.908 31 H 0.088 0.912 32 H 0.077 0.923 33 H 0.064 0.936 34 H 0.221 0.779 35 H 0.228 0.772 36 H 0.085 0.915 37 H 0.102 0.898 38 H 0.071 0.929 39 H 0.137 0.863 40 H 0.128 0.872 41 H 0.125 0.875 42 H 0.126 0.874 43 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -6.312 -12.600 -2.023 14.237 hybrid contribution 0.016 0.438 0.394 0.589 sum -6.296 -12.162 -1.629 13.792 Atomic orbital electron populations 1.21783 0.95659 1.01223 1.02306 1.21677 0.95866 0.95596 1.03045 1.20932 0.92030 0.93320 0.89184 0.88708 1.22703 0.94683 0.95050 0.89400 1.86417 1.25010 1.72225 1.53852 1.46099 1.72819 1.07353 1.12563 1.20828 0.76592 0.81036 0.91395 1.90725 1.47404 1.63260 1.36519 1.21666 1.00736 0.98532 0.94858 1.18116 0.98568 0.88865 0.90750 0.93329 1.20574 0.89836 1.16245 1.25547 0.91188 1.24881 0.95357 0.95641 0.95848 1.69902 1.22909 1.24397 1.36599 0.86923 0.84273 0.77102 0.81518 1.19861 1.22382 1.18595 1.20746 0.91550 0.95542 0.96015 1.20958 0.99188 0.99746 0.92047 1.21049 0.96305 0.99052 0.98151 1.20855 0.96422 1.02011 0.97510 1.20961 0.99577 1.00509 0.93420 1.21150 0.96789 0.99862 0.97638 0.92382 0.92920 0.92800 0.90758 0.91204 0.92299 0.93615 0.77880 0.77182 0.91468 0.89800 0.92914 0.86304 0.87219 0.87460 0.87420 0.87059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 9.80 37.15 0.36 -1.15 16 2 C -0.12 -1.32 5.19 -26.73 -0.14 -1.46 16 3 C 0.15 2.08 2.37 -67.93 -0.16 1.92 16 4 H 0.10 1.45 7.58 -51.93 -0.39 1.06 16 5 C 0.06 0.83 6.85 37.16 0.25 1.09 16 6 O -0.57 -7.15 12.83 -35.23 -0.45 -7.60 16 7 N -0.73 -11.03 4.48 -53.81 -0.24 -11.27 16 8 C 0.51 10.05 7.55 -10.99 -0.08 9.97 16 9 O -0.51 -12.28 14.66 5.56 0.08 -12.20 16 10 C -0.12 -2.21 4.94 -27.88 -0.14 -2.35 16 11 C 0.06 1.29 1.28 -92.92 -0.12 1.18 16 12 H 0.05 1.19 4.79 -51.93 -0.25 0.94 16 13 C -0.49 -13.38 6.93 -34.44 -0.24 -13.62 16 14 H 0.07 2.09 8.06 -52.49 -0.42 1.67 16 15 C 0.08 2.50 5.47 -17.82 -0.10 2.40 16 16 N -0.90 -28.22 13.96 55.43 0.77 -27.44 16 17 Si 0.87 22.94 27.04 -169.99 -4.60 18.35 16 18 H -0.27 -7.33 7.11 56.52 0.40 -6.93 16 19 H -0.30 -7.81 7.11 56.52 0.40 -7.41 16 20 H -0.26 -6.36 5.15 56.52 0.29 -6.07 16 21 C -0.04 -0.80 4.77 -104.63 -0.50 -1.30 16 22 C -0.10 -2.00 8.87 -39.59 -0.35 -2.35 16 23 C -0.13 -2.20 10.05 -39.58 -0.40 -2.60 16 24 C -0.15 -2.47 10.05 -39.58 -0.40 -2.87 16 25 C -0.13 -2.20 10.05 -39.58 -0.40 -2.60 16 26 C -0.14 -2.71 9.13 -39.58 -0.36 -3.08 16 27 H 0.06 0.60 7.75 -51.93 -0.40 0.20 16 28 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.07 0.80 7.73 -51.93 -0.40 0.40 16 31 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.37 3.28 9.12 45.56 0.42 3.70 16 35 H 0.39 5.00 8.60 -40.82 -0.35 4.64 16 36 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.08 1.50 7.80 -51.93 -0.41 1.10 16 38 H 0.26 7.80 8.31 -40.82 -0.34 7.46 16 39 H 0.12 2.32 7.77 -52.48 -0.41 1.92 16 40 H 0.11 1.60 8.06 -52.48 -0.42 1.18 16 41 H 0.11 1.46 8.06 -52.49 -0.42 1.03 16 42 H 0.11 1.58 8.06 -52.49 -0.42 1.15 16 43 H 0.11 2.18 6.96 -52.49 -0.37 1.82 16 LS Contribution 353.09 15.07 5.32 5.32 Total: -1.00 -34.16 353.09 -7.91 -42.07 By element: Atomic # 1 Polarization: 15.64 SS G_CDS: -6.03 Total: 9.60 kcal Atomic # 6 Polarization: -14.07 SS G_CDS: -2.76 Total: -16.83 kcal Atomic # 7 Polarization: -39.25 SS G_CDS: 0.53 Total: -38.71 kcal Atomic # 8 Polarization: -19.43 SS G_CDS: -0.37 Total: -19.80 kcal Atomic # 14 Polarization: 22.94 SS G_CDS: -4.60 Total: 18.35 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -34.16 -7.91 -42.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356636844.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.328 kcal (2) G-P(sol) polarization free energy of solvation -34.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds