Wall clock time and date at job start Tue Mar 31 2020 06:28:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52998 * 109.47036 * 2 1 4 4 H 1.08999 * 109.47617 * 54.99796 * 3 2 1 5 5 C 1.53003 * 109.47328 * 175.00301 * 3 2 1 6 6 O 1.42895 * 109.47257 * 54.99621 * 5 3 2 7 7 N 1.46502 * 109.47125 * 294.99865 * 3 2 1 8 8 C 1.34779 * 120.00266 * 154.99889 * 7 3 2 9 9 O 1.21280 * 119.99930 * 0.02562 * 8 7 3 10 10 C 1.50695 * 120.00025 * 180.02562 * 8 7 3 11 11 C 1.53006 * 109.47193 * 179.97438 * 10 8 7 12 12 H 1.09002 * 109.47044 * 305.37358 * 11 10 8 13 13 C 1.50698 * 109.46841 * 65.36711 * 11 10 8 14 14 H 1.08002 * 119.99582 * 34.62465 * 13 11 10 15 15 C 1.37873 * 120.00205 * 214.62198 * 13 11 10 16 16 N 1.31515 * 120.00076 * 186.45305 * 15 13 11 17 17 Si 1.86801 * 119.99834 * 6.44810 * 15 13 11 18 18 H 1.48493 * 109.47022 * 85.01121 * 17 15 13 19 19 H 1.48505 * 109.46973 * 205.00836 * 17 15 13 20 20 H 1.48499 * 109.47324 * 325.00932 * 17 15 13 21 21 C 1.50693 * 109.47335 * 185.36850 * 11 10 8 22 22 C 1.38233 * 120.00204 * 296.36125 * 21 11 10 23 23 C 1.38232 * 120.00061 * 179.78540 * 22 21 11 24 24 C 1.38240 * 120.00143 * 0.44262 * 23 22 21 25 25 C 1.38232 * 119.99669 * 359.81150 * 24 23 22 26 26 C 1.38239 * 120.00377 * 359.97438 * 25 24 23 27 27 H 1.08997 * 109.47494 * 60.00115 * 1 2 3 28 28 H 1.09005 * 109.47351 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47199 * 299.99692 * 1 2 3 30 30 H 1.08996 * 109.47488 * 239.99915 * 2 1 3 31 31 H 1.09006 * 109.47516 * 119.99790 * 2 1 3 32 32 H 1.09000 * 109.46809 * 175.00287 * 5 3 2 33 33 H 1.09001 * 109.46684 * 294.99795 * 5 3 2 34 34 H 0.96703 * 113.99598 * 180.02562 * 6 5 3 35 35 H 0.97001 * 119.99872 * 335.00561 * 7 3 2 36 36 H 1.09002 * 109.47454 * 60.00127 * 10 8 7 37 37 H 1.08991 * 109.47441 * 300.00028 * 10 8 7 38 38 H 0.97003 * 119.99827 * 179.97438 * 16 15 13 39 39 H 1.08003 * 119.99734 * 359.97438 * 22 21 11 40 40 H 1.08006 * 120.00290 * 180.27527 * 23 22 21 41 41 H 1.08001 * 119.99861 * 179.82836 * 24 23 22 42 42 H 1.07999 * 119.99708 * 180.02562 * 25 24 23 43 43 H 1.07995 * 119.99920 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5648 1.4444 0.1256 6 8 4.1293 0.6405 -0.9121 7 7 1.6524 2.0975 -1.2518 8 6 1.5255 3.4384 -1.2997 9 8 1.7326 4.1029 -0.3065 10 6 1.1263 4.1120 -2.5872 11 6 1.0544 5.6249 -2.3703 12 1 0.3874 5.8410 -1.5357 13 6 2.4314 6.1543 -2.0629 14 1 3.2974 5.7107 -2.5315 15 6 2.5856 7.2048 -1.1834 16 7 3.7701 7.7497 -1.0112 17 14 1.1122 7.8541 -0.2364 18 1 0.9155 7.0418 0.9910 19 1 1.3510 9.2706 0.1404 20 1 -0.1013 7.7663 -1.0879 21 6 0.5288 6.2868 -3.6179 22 6 1.2508 6.2160 -4.7946 23 6 0.7665 6.8194 -5.9401 24 6 -0.4355 7.5015 -5.9067 25 6 -1.1550 7.5768 -4.7288 26 6 -0.6728 6.9696 -3.5843 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 3.9353 2.4656 0.0366 33 1 3.8498 1.0378 1.0960 34 1 5.0951 0.5958 -0.8937 35 1 1.4870 1.5660 -2.0463 36 1 0.1500 3.7438 -2.9025 37 1 1.8645 3.8898 -3.3576 38 1 3.8785 8.4891 -0.3927 39 1 2.1918 5.6867 -4.8196 40 1 1.3284 6.7604 -6.8605 41 1 -0.8125 7.9753 -6.8011 42 1 -2.0942 8.1093 -4.7029 43 1 -1.2352 7.0281 -2.6642 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356636844.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:08 Heat of formation + Delta-G solvation = -101.246887 kcal Electronic energy + Delta-G solvation = -23692.306611 eV Core-core repulsion = 20314.760255 eV Total energy + Delta-G solvation = -3377.546355 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.91215 -39.91405 -38.28879 -36.18600 -35.69274 -33.76973 -33.08592 -31.59758 -30.56583 -29.44026 -27.64660 -24.70124 -24.15746 -23.29826 -22.09869 -21.36961 -20.76059 -19.01958 -18.47513 -17.94776 -17.24201 -17.02454 -16.52486 -16.08458 -15.83450 -15.46528 -15.18745 -15.14743 -14.81606 -14.62188 -14.37159 -14.16253 -13.85086 -13.72894 -13.41647 -13.30627 -13.16275 -12.86369 -12.71076 -12.28671 -12.07842 -11.91842 -11.89650 -11.79308 -11.74762 -11.46412 -11.09476 -10.97734 -10.63297 -10.46405 -9.88038 -9.61262 -9.29493 -8.22762 -6.18379 0.69218 0.74122 1.30319 1.38459 1.40843 1.95541 2.40313 2.41757 3.08262 3.25162 3.41046 3.78053 4.05745 4.12611 4.15400 4.27178 4.31787 4.32761 4.43801 4.45722 4.50019 4.55565 4.65335 4.74107 4.80853 4.86236 4.87620 4.98418 5.09100 5.12889 5.21095 5.27108 5.38900 5.41330 5.44593 5.68052 5.73523 5.77567 5.83290 6.03388 6.33801 6.36978 6.80119 6.80161 6.82769 7.45226 7.58834 8.94283 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.014503 B = 0.005237 C = 0.004574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1930.135481 B = 5345.626297 C = 6119.437245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.111 4.111 3 C 0.144 3.856 4 H 0.076 0.924 5 C 0.067 3.933 6 O -0.574 6.574 7 N -0.714 5.714 8 C 0.511 3.489 9 O -0.563 6.563 10 C -0.113 4.113 11 C 0.058 3.942 12 H 0.032 0.968 13 C -0.462 4.462 14 H 0.032 0.968 15 C 0.023 3.977 16 N -0.954 5.954 17 Si 0.923 3.077 18 H -0.287 1.287 19 H -0.298 1.298 20 H -0.231 1.231 21 C -0.063 4.063 22 C -0.119 4.119 23 C -0.125 4.125 24 C -0.140 4.140 25 C -0.124 4.124 26 C -0.153 4.153 27 H 0.052 0.948 28 H 0.072 0.928 29 H 0.046 0.954 30 H 0.079 0.921 31 H 0.086 0.914 32 H 0.014 0.986 33 H 0.071 0.929 34 H 0.392 0.608 35 H 0.410 0.590 36 H 0.103 0.897 37 H 0.091 0.909 38 H 0.258 0.742 39 H 0.108 0.892 40 H 0.139 0.861 41 H 0.147 0.853 42 H 0.140 0.860 43 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.401 -14.501 -4.810 17.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.149 4.149 3 C 0.038 3.962 4 H 0.094 0.906 5 C -0.012 4.012 6 O -0.381 6.381 7 N -0.368 5.368 8 C 0.299 3.701 9 O -0.440 6.440 10 C -0.153 4.153 11 C 0.038 3.962 12 H 0.051 0.949 13 C -0.500 4.500 14 H 0.050 0.950 15 C -0.173 4.173 16 N -0.595 5.595 17 Si 0.750 3.250 18 H -0.213 1.213 19 H -0.225 1.225 20 H -0.155 1.155 21 C -0.063 4.063 22 C -0.138 4.138 23 C -0.143 4.143 24 C -0.158 4.158 25 C -0.142 4.142 26 C -0.171 4.171 27 H 0.071 0.929 28 H 0.091 0.909 29 H 0.065 0.935 30 H 0.098 0.902 31 H 0.105 0.895 32 H 0.032 0.968 33 H 0.090 0.910 34 H 0.241 0.759 35 H 0.246 0.754 36 H 0.121 0.879 37 H 0.109 0.891 38 H 0.067 0.933 39 H 0.126 0.874 40 H 0.157 0.843 41 H 0.165 0.835 42 H 0.158 0.842 43 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -8.799 -13.975 -4.153 17.028 hybrid contribution 0.803 0.716 0.896 1.400 sum -7.996 -13.259 -3.257 15.822 Atomic orbital electron populations 1.21780 0.94982 1.02379 1.01712 1.21603 0.96315 0.92873 1.04072 1.21114 0.92218 0.95088 0.87737 0.90614 1.22526 0.94591 0.93031 0.91043 1.86365 1.26762 1.71460 1.53507 1.45901 1.71011 1.06045 1.13813 1.21006 0.76030 0.82261 0.90838 1.90706 1.50257 1.64786 1.38288 1.21589 1.02963 0.96010 0.94776 1.17992 0.95190 0.91485 0.91487 0.94934 1.20776 0.91252 1.14530 1.23431 0.94973 1.25597 0.97451 0.96779 0.97433 1.70040 1.24996 1.25934 1.38554 0.86120 0.82853 0.75915 0.80106 1.21338 1.22546 1.15462 1.20495 0.93190 0.97083 0.95579 1.20996 0.98996 1.00914 0.92848 1.21393 0.96837 0.97872 0.98198 1.21336 0.95421 1.00439 0.98592 1.21336 1.00691 0.99523 0.92634 1.21256 0.96601 1.00423 0.98834 0.92912 0.90868 0.93513 0.90233 0.89545 0.96781 0.91047 0.75889 0.75425 0.87857 0.89057 0.93341 0.87417 0.84332 0.83549 0.84203 0.87319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.69 9.80 71.98 0.71 -1.98 16 2 C -0.11 -2.12 5.19 30.59 0.16 -1.96 16 3 C 0.14 3.92 2.37 44.99 0.11 4.02 16 4 H 0.08 2.39 7.58 -2.39 -0.02 2.37 16 5 C 0.07 1.86 6.85 71.98 0.49 2.35 16 6 O -0.57 -13.73 12.83 -148.98 -1.91 -15.64 16 7 N -0.71 -21.25 4.48 -442.53 -1.98 -23.23 16 8 C 0.51 20.38 7.55 87.66 0.66 21.04 16 9 O -0.56 -28.60 14.66 -3.03 -0.04 -28.65 16 10 C -0.11 -4.26 4.94 29.85 0.15 -4.11 16 11 C 0.06 2.69 1.28 -12.29 -0.02 2.67 16 12 H 0.03 1.61 4.79 -2.39 -0.01 1.60 16 13 C -0.46 -26.63 6.93 25.60 0.18 -26.46 16 14 H 0.03 2.04 8.06 -2.91 -0.02 2.02 16 15 C 0.02 1.44 5.47 84.65 0.46 1.90 16 16 N -0.95 -62.97 13.96 21.45 0.30 -62.67 16 17 Si 0.92 48.96 27.04 68.60 1.85 50.81 16 18 H -0.29 -15.71 7.11 99.48 0.71 -15.00 16 19 H -0.30 -15.68 7.11 99.48 0.71 -14.98 16 20 H -0.23 -10.99 5.15 99.48 0.51 -10.48 16 21 C -0.06 -2.62 4.77 -19.87 -0.09 -2.72 16 22 C -0.12 -4.59 8.87 22.27 0.20 -4.39 16 23 C -0.13 -3.92 10.05 22.27 0.22 -3.70 16 24 C -0.14 -3.97 10.05 22.27 0.22 -3.75 16 25 C -0.12 -3.82 10.05 22.27 0.22 -3.59 16 26 C -0.15 -5.77 9.13 22.27 0.20 -5.57 16 27 H 0.05 0.98 7.75 -2.39 -0.02 0.97 16 28 H 0.07 1.02 8.14 -2.38 -0.02 1.00 16 29 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.08 1.49 7.73 -2.39 -0.02 1.47 16 31 H 0.09 1.42 8.14 -2.38 -0.02 1.40 16 32 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 33 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 34 H 0.39 6.43 9.12 -74.06 -0.68 5.76 16 35 H 0.41 9.76 8.60 -92.71 -0.80 8.96 16 36 H 0.10 3.12 8.14 -2.39 -0.02 3.10 16 37 H 0.09 3.28 7.80 -2.39 -0.02 3.26 16 38 H 0.26 16.26 8.31 -92.71 -0.77 15.49 16 39 H 0.11 4.26 7.77 -2.91 -0.02 4.24 16 40 H 0.14 3.49 8.06 -2.91 -0.02 3.47 16 41 H 0.15 3.05 8.06 -2.91 -0.02 3.03 16 42 H 0.14 3.38 8.06 -2.91 -0.02 3.36 16 43 H 0.11 4.07 6.96 -2.91 -0.02 4.05 16 Total: -1.00 -79.03 353.09 1.44 -77.59 By element: Atomic # 1 Polarization: 28.67 SS G_CDS: -0.66 Total: 28.02 kcal Atomic # 6 Polarization: -30.11 SS G_CDS: 3.87 Total: -26.23 kcal Atomic # 7 Polarization: -84.22 SS G_CDS: -1.68 Total: -85.91 kcal Atomic # 8 Polarization: -42.33 SS G_CDS: -1.96 Total: -44.28 kcal Atomic # 14 Polarization: 48.96 SS G_CDS: 1.85 Total: 50.81 kcal Total: -79.03 1.44 -77.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356636844.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.653 kcal (2) G-P(sol) polarization free energy of solvation -79.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds