Wall clock time and date at job start Tue Mar 31 2020 06:28:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53003 * 109.47248 * 2 1 4 4 H 1.08999 * 109.47252 * 305.00427 * 3 2 1 5 5 C 1.53000 * 109.47059 * 185.00380 * 3 2 1 6 6 O 1.42906 * 109.47003 * 305.00078 * 5 3 2 7 7 N 1.46504 * 109.46758 * 65.00522 * 3 2 1 8 8 C 1.34774 * 119.99467 * 204.99781 * 7 3 2 9 9 O 1.21275 * 120.00685 * 0.02562 * 8 7 3 10 10 C 1.50709 * 119.99677 * 180.02562 * 8 7 3 11 11 C 1.53000 * 109.47062 * 180.02562 * 10 8 7 12 12 H 1.09007 * 109.46937 * 54.99862 * 11 10 8 13 13 C 1.50696 * 109.47104 * 295.00043 * 11 10 8 14 14 H 1.07997 * 119.99861 * 325.12457 * 13 11 10 15 15 C 1.37875 * 120.00142 * 145.12968 * 13 11 10 16 16 N 1.31512 * 120.00061 * 184.98976 * 15 13 11 17 17 Si 1.86803 * 119.99825 * 4.98409 * 15 13 11 18 18 H 1.48493 * 109.47055 * 84.73570 * 17 15 13 19 19 H 1.48504 * 109.46957 * 204.73265 * 17 15 13 20 20 H 1.48494 * 109.47278 * 324.72908 * 17 15 13 21 21 C 1.50703 * 109.47054 * 174.99815 * 11 10 8 22 22 C 1.38231 * 119.99571 * 64.69161 * 21 11 10 23 23 C 1.38240 * 119.99566 * 179.79074 * 22 21 11 24 24 C 1.38234 * 120.00054 * 0.43596 * 23 22 21 25 25 C 1.38238 * 120.00087 * 359.81774 * 24 23 22 26 26 C 1.38234 * 119.99894 * 244.96820 * 21 11 10 27 27 H 1.09006 * 109.47457 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.47068 * 299.99892 * 1 2 3 29 29 H 1.08996 * 109.47576 * 59.99190 * 1 2 3 30 30 H 1.08999 * 109.47119 * 240.00404 * 2 1 3 31 31 H 1.08995 * 109.47491 * 120.00262 * 2 1 3 32 32 H 1.08992 * 109.47555 * 65.00080 * 5 3 2 33 33 H 1.09007 * 109.46939 * 185.00404 * 5 3 2 34 34 H 0.96702 * 113.99863 * 180.02562 * 6 5 3 35 35 H 0.96993 * 119.99844 * 24.99829 * 7 3 2 36 36 H 1.09004 * 109.46715 * 300.00121 * 10 8 7 37 37 H 1.08993 * 109.47153 * 60.00265 * 10 8 7 38 38 H 0.97003 * 119.99759 * 180.02562 * 16 15 13 39 39 H 1.07997 * 120.00741 * 359.97438 * 22 21 11 40 40 H 1.07995 * 120.00130 * 180.27877 * 23 22 21 41 41 H 1.07999 * 120.00426 * 179.83590 * 24 23 22 42 42 H 1.07995 * 120.00283 * 179.97438 * 25 24 23 43 43 H 1.08000 * 120.00477 * 359.97400 * 26 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5648 1.4443 -0.1258 6 8 4.1293 0.6403 0.9120 7 7 1.6525 2.0974 1.2519 8 6 1.5257 3.4383 1.2997 9 8 1.7319 4.1028 0.3064 10 6 1.1277 4.1121 2.5877 11 6 1.0556 5.6249 2.3708 12 1 0.3827 5.8414 1.5409 13 6 2.4309 6.1529 2.0531 14 1 3.2996 5.7114 2.5187 15 6 2.5801 7.1996 1.1682 16 7 3.7834 7.5961 0.8155 17 14 1.0730 8.0544 0.4700 18 1 0.6139 9.1010 1.4182 19 1 1.4181 8.6821 -0.8308 20 1 -0.0110 7.0599 0.2676 21 6 0.5397 6.2878 3.6220 22 6 1.2806 6.2352 4.7877 23 6 0.8093 6.8470 5.9343 24 6 -0.4070 7.5035 5.9174 25 6 -1.1504 7.5516 4.7530 26 6 -0.6772 6.9435 3.6053 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 1.8932 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 3.8498 1.0377 -1.0961 33 1 3.9355 2.4655 -0.0366 34 1 5.0951 0.5961 0.8940 35 1 1.4872 1.5659 2.0463 36 1 0.1516 3.7438 2.9038 37 1 1.8666 3.8899 3.3574 38 1 3.8883 8.3327 0.1932 39 1 2.2290 5.7188 4.8021 40 1 1.3902 6.8098 6.8440 41 1 -0.7765 7.9792 6.8139 42 1 -2.1009 8.0642 4.7398 43 1 -1.2580 6.9811 2.6955 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356636845.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:11 Heat of formation + Delta-G solvation = -75.485557 kcal Electronic energy + Delta-G solvation = -23691.074385 eV Core-core repulsion = 20314.645125 eV Total energy + Delta-G solvation = -3376.429260 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.40620 -38.50280 -37.02162 -34.96396 -33.97521 -31.99332 -31.55533 -30.20311 -29.22759 -28.16812 -25.77110 -23.50846 -22.64742 -21.87031 -20.86401 -20.00387 -19.12564 -17.32500 -16.92227 -16.47581 -15.92007 -15.68766 -14.89305 -14.54793 -14.29573 -14.13576 -13.98968 -13.76924 -13.49176 -12.99650 -12.72774 -12.61481 -12.44620 -12.37301 -12.16176 -11.87624 -11.82362 -11.31388 -11.14066 -10.93315 -10.77591 -10.75128 -10.49116 -10.34433 -9.87089 -9.81691 -9.58537 -9.05144 -8.89567 -8.49122 -8.39718 -8.22181 -7.80457 -5.96146 -3.92202 2.09274 2.15228 3.42957 3.47091 3.48426 3.54027 3.74305 4.45205 4.52927 4.58522 4.79984 5.09405 5.15162 5.31828 5.48810 5.52018 5.56025 5.59396 5.64503 5.69294 5.72125 5.85708 5.92092 5.97581 6.04976 6.05965 6.11948 6.19793 6.25158 6.31914 6.34800 6.65502 6.71388 6.84760 7.01212 7.07388 7.14364 7.27433 7.60450 7.71436 7.74247 7.84778 8.16365 8.55933 9.02830 9.10502 9.68815 11.17205 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.014709 B = 0.005206 C = 0.004551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1903.185547 B = 5377.432287 C = 6151.673406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.124 4.124 3 C 0.151 3.849 4 H 0.095 0.905 5 C 0.061 3.939 6 O -0.570 6.570 7 N -0.734 5.734 8 C 0.514 3.486 9 O -0.504 6.504 10 C -0.115 4.115 11 C 0.046 3.954 12 H 0.057 0.943 13 C -0.483 4.483 14 H 0.070 0.930 15 C 0.086 3.914 16 N -0.900 5.900 17 Si 0.870 3.130 18 H -0.277 1.277 19 H -0.292 1.292 20 H -0.261 1.261 21 C -0.039 4.039 22 C -0.101 4.101 23 C -0.126 4.126 24 C -0.150 4.150 25 C -0.124 4.124 26 C -0.141 4.141 27 H 0.052 0.948 28 H 0.057 0.943 29 H 0.053 0.947 30 H 0.069 0.931 31 H 0.074 0.926 32 H 0.046 0.954 33 H 0.059 0.941 34 H 0.375 0.625 35 H 0.394 0.606 36 H 0.066 0.934 37 H 0.083 0.917 38 H 0.261 0.739 39 H 0.120 0.880 40 H 0.110 0.890 41 H 0.108 0.892 42 H 0.108 0.892 43 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.890 -12.785 3.200 14.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.162 4.162 3 C 0.046 3.954 4 H 0.113 0.887 5 C -0.018 4.018 6 O -0.375 6.375 7 N -0.389 5.389 8 C 0.301 3.699 9 O -0.376 6.376 10 C -0.155 4.155 11 C 0.027 3.973 12 H 0.075 0.925 13 C -0.520 4.520 14 H 0.088 0.912 15 C -0.116 4.116 16 N -0.538 5.538 17 Si 0.699 3.301 18 H -0.203 1.203 19 H -0.219 1.219 20 H -0.186 1.186 21 C -0.040 4.040 22 C -0.119 4.119 23 C -0.144 4.144 24 C -0.168 4.168 25 C -0.142 4.142 26 C -0.159 4.159 27 H 0.071 0.929 28 H 0.076 0.924 29 H 0.072 0.928 30 H 0.088 0.912 31 H 0.092 0.908 32 H 0.064 0.936 33 H 0.078 0.922 34 H 0.221 0.779 35 H 0.228 0.772 36 H 0.085 0.915 37 H 0.101 0.899 38 H 0.071 0.929 39 H 0.138 0.862 40 H 0.128 0.872 41 H 0.126 0.874 42 H 0.127 0.873 43 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -6.267 -12.197 2.474 13.935 hybrid contribution -0.032 0.557 -0.237 0.606 sum -6.299 -11.640 2.237 13.423 Atomic orbital electron populations 1.21783 0.95674 1.01201 1.02306 1.21676 0.95854 0.95627 1.03026 1.20925 0.92024 0.93284 0.89197 0.88718 1.22708 0.94686 0.95079 0.89374 1.86416 1.24994 1.72224 1.53892 1.46098 1.72907 1.07356 1.12534 1.20812 0.76662 0.81018 0.91422 1.90729 1.47197 1.63226 1.36479 1.21628 1.00663 0.98405 0.94850 1.18304 0.98922 0.89099 0.90972 0.92467 1.20584 0.89815 1.16510 1.25051 0.91163 1.24858 0.95211 0.96456 0.95065 1.69886 1.21606 1.28056 1.34209 0.86964 0.84723 0.79872 0.78535 1.20287 1.21868 1.18636 1.20808 0.91521 0.95486 0.96173 1.20977 0.99336 0.99593 0.92041 1.21065 0.96199 0.98978 0.98180 1.20861 0.96124 1.02195 0.97646 1.20960 0.99498 1.00311 0.93478 1.21081 0.96694 1.00428 0.97689 0.92935 0.92397 0.92793 0.91215 0.90777 0.93628 0.92249 0.77896 0.77231 0.91512 0.89911 0.92916 0.86207 0.87163 0.87403 0.87350 0.87321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 9.80 37.15 0.36 -1.17 16 2 C -0.12 -1.33 5.19 -26.73 -0.14 -1.47 16 3 C 0.15 2.11 2.37 -67.93 -0.16 1.95 16 4 H 0.09 1.47 7.58 -51.93 -0.39 1.07 16 5 C 0.06 0.84 6.85 37.16 0.25 1.10 16 6 O -0.57 -7.24 12.83 -35.23 -0.45 -7.69 16 7 N -0.73 -11.17 4.48 -53.80 -0.24 -11.41 16 8 C 0.51 10.16 7.54 -10.98 -0.08 10.08 16 9 O -0.50 -12.37 14.65 5.56 0.08 -12.29 16 10 C -0.12 -2.18 4.96 -27.88 -0.14 -2.32 16 11 C 0.05 1.07 1.21 -92.92 -0.11 0.96 16 12 H 0.06 1.42 4.70 -51.93 -0.24 1.18 16 13 C -0.48 -13.33 6.87 -34.44 -0.24 -13.57 16 14 H 0.07 2.10 8.06 -52.49 -0.42 1.68 16 15 C 0.09 2.55 5.47 -17.82 -0.10 2.45 16 16 N -0.90 -28.23 13.96 55.43 0.77 -27.45 16 17 Si 0.87 22.94 27.15 -169.99 -4.62 18.32 16 18 H -0.28 -7.17 7.11 56.52 0.40 -6.77 16 19 H -0.29 -7.75 7.11 56.52 0.40 -7.35 16 20 H -0.26 -6.64 6.06 56.52 0.34 -6.30 16 21 C -0.04 -0.83 4.55 -104.62 -0.48 -1.30 16 22 C -0.10 -1.99 8.87 -39.58 -0.35 -2.34 16 23 C -0.13 -2.16 10.05 -39.58 -0.40 -2.56 16 24 C -0.15 -2.46 10.05 -39.58 -0.40 -2.86 16 25 C -0.12 -2.15 10.05 -39.58 -0.40 -2.54 16 26 C -0.14 -2.78 9.43 -39.58 -0.37 -3.15 16 27 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.06 0.61 7.75 -51.92 -0.40 0.21 16 29 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.07 0.81 7.73 -51.93 -0.40 0.41 16 32 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.06 1.03 8.14 -51.92 -0.42 0.61 16 34 H 0.37 3.34 9.12 45.56 0.42 3.76 16 35 H 0.39 5.06 8.60 -40.82 -0.35 4.71 16 36 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.08 1.49 7.86 -51.93 -0.41 1.08 16 38 H 0.26 7.80 8.31 -40.82 -0.34 7.46 16 39 H 0.12 2.33 7.80 -52.49 -0.41 1.92 16 40 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 41 H 0.11 1.45 8.06 -52.49 -0.42 1.03 16 42 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 43 H 0.11 2.08 7.95 -52.49 -0.42 1.66 16 LS Contribution 355.06 15.07 5.35 5.35 Total: -1.00 -34.19 355.06 -7.88 -42.07 By element: Atomic # 1 Polarization: 15.90 SS G_CDS: -6.03 Total: 9.86 kcal Atomic # 6 Polarization: -14.02 SS G_CDS: -2.74 Total: -16.76 kcal Atomic # 7 Polarization: -39.40 SS G_CDS: 0.53 Total: -38.87 kcal Atomic # 8 Polarization: -19.61 SS G_CDS: -0.37 Total: -19.98 kcal Atomic # 14 Polarization: 22.94 SS G_CDS: -4.62 Total: 18.32 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -34.19 -7.88 -42.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356636845.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.414 kcal (2) G-P(sol) polarization free energy of solvation -34.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds