Wall clock time and date at job start Tue Mar 31 2020 06:28:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53003 * 109.47248 * 2 1 4 4 H 1.08999 * 109.47252 * 305.00427 * 3 2 1 5 5 C 1.53000 * 109.47059 * 185.00380 * 3 2 1 6 6 O 1.42906 * 109.47003 * 305.00078 * 5 3 2 7 7 N 1.46504 * 109.46758 * 65.00522 * 3 2 1 8 8 C 1.34774 * 119.99467 * 204.99781 * 7 3 2 9 9 O 1.21275 * 120.00685 * 0.02562 * 8 7 3 10 10 C 1.50709 * 119.99677 * 180.02562 * 8 7 3 11 11 C 1.53000 * 109.47062 * 180.02562 * 10 8 7 12 12 H 1.09007 * 109.46937 * 54.99862 * 11 10 8 13 13 C 1.50696 * 109.47104 * 295.00043 * 11 10 8 14 14 H 1.07997 * 119.99861 * 325.12457 * 13 11 10 15 15 C 1.37875 * 120.00142 * 145.12968 * 13 11 10 16 16 N 1.31512 * 120.00061 * 184.98976 * 15 13 11 17 17 Si 1.86803 * 119.99825 * 4.98409 * 15 13 11 18 18 H 1.48493 * 109.47055 * 84.73570 * 17 15 13 19 19 H 1.48504 * 109.46957 * 204.73265 * 17 15 13 20 20 H 1.48494 * 109.47278 * 324.72908 * 17 15 13 21 21 C 1.50703 * 109.47054 * 174.99815 * 11 10 8 22 22 C 1.38231 * 119.99571 * 64.69161 * 21 11 10 23 23 C 1.38240 * 119.99566 * 179.79074 * 22 21 11 24 24 C 1.38234 * 120.00054 * 0.43596 * 23 22 21 25 25 C 1.38238 * 120.00087 * 359.81774 * 24 23 22 26 26 C 1.38234 * 119.99894 * 244.96820 * 21 11 10 27 27 H 1.09006 * 109.47457 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.47068 * 299.99892 * 1 2 3 29 29 H 1.08996 * 109.47576 * 59.99190 * 1 2 3 30 30 H 1.08999 * 109.47119 * 240.00404 * 2 1 3 31 31 H 1.08995 * 109.47491 * 120.00262 * 2 1 3 32 32 H 1.08992 * 109.47555 * 65.00080 * 5 3 2 33 33 H 1.09007 * 109.46939 * 185.00404 * 5 3 2 34 34 H 0.96702 * 113.99863 * 180.02562 * 6 5 3 35 35 H 0.96993 * 119.99844 * 24.99829 * 7 3 2 36 36 H 1.09004 * 109.46715 * 300.00121 * 10 8 7 37 37 H 1.08993 * 109.47153 * 60.00265 * 10 8 7 38 38 H 0.97003 * 119.99759 * 180.02562 * 16 15 13 39 39 H 1.07997 * 120.00741 * 359.97438 * 22 21 11 40 40 H 1.07995 * 120.00130 * 180.27877 * 23 22 21 41 41 H 1.07999 * 120.00426 * 179.83590 * 24 23 22 42 42 H 1.07995 * 120.00283 * 179.97438 * 25 24 23 43 43 H 1.08000 * 120.00477 * 359.97400 * 26 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5648 1.4443 -0.1258 6 8 4.1293 0.6403 0.9120 7 7 1.6525 2.0974 1.2519 8 6 1.5257 3.4383 1.2997 9 8 1.7319 4.1028 0.3064 10 6 1.1277 4.1121 2.5877 11 6 1.0556 5.6249 2.3708 12 1 0.3827 5.8414 1.5409 13 6 2.4309 6.1529 2.0531 14 1 3.2996 5.7114 2.5187 15 6 2.5801 7.1996 1.1682 16 7 3.7834 7.5961 0.8155 17 14 1.0730 8.0544 0.4700 18 1 0.6139 9.1010 1.4182 19 1 1.4181 8.6821 -0.8308 20 1 -0.0110 7.0599 0.2676 21 6 0.5397 6.2878 3.6220 22 6 1.2806 6.2352 4.7877 23 6 0.8093 6.8470 5.9343 24 6 -0.4070 7.5035 5.9174 25 6 -1.1504 7.5516 4.7530 26 6 -0.6772 6.9435 3.6053 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 1.8932 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 3.8498 1.0377 -1.0961 33 1 3.9355 2.4655 -0.0366 34 1 5.0951 0.5961 0.8940 35 1 1.4872 1.5659 2.0463 36 1 0.1516 3.7438 2.9038 37 1 1.8666 3.8899 3.3574 38 1 3.8883 8.3327 0.1932 39 1 2.2290 5.7188 4.8021 40 1 1.3902 6.8098 6.8440 41 1 -0.7765 7.9792 6.8139 42 1 -2.1009 8.0642 4.7398 43 1 -1.2580 6.9811 2.6955 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356636845.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:11 Heat of formation + Delta-G solvation = -100.285471 kcal Electronic energy + Delta-G solvation = -23692.149790 eV Core-core repulsion = 20314.645125 eV Total energy + Delta-G solvation = -3377.504665 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.90284 -39.92359 -38.28141 -36.18269 -35.69067 -33.76933 -33.08090 -31.60771 -30.56912 -29.43686 -27.65103 -24.70095 -24.15866 -23.29534 -22.10208 -21.36603 -20.76416 -19.03486 -18.47015 -17.95120 -17.23599 -17.02285 -16.50332 -16.07298 -15.86041 -15.48494 -15.18683 -15.14910 -14.82327 -14.61701 -14.38660 -14.13584 -13.82118 -13.77539 -13.46357 -13.31069 -13.17102 -12.90530 -12.75976 -12.28208 -12.04754 -11.90696 -11.88615 -11.81609 -11.74473 -11.47147 -11.01538 -10.97841 -10.71666 -10.42749 -9.87180 -9.63559 -9.30962 -8.22482 -6.18206 0.67150 0.72539 1.28865 1.32297 1.38334 1.97012 2.38962 2.41714 3.07748 3.21892 3.41461 3.78526 4.06275 4.11763 4.15981 4.27428 4.30955 4.31715 4.44153 4.45110 4.49801 4.56103 4.64443 4.74676 4.81354 4.84722 4.87172 4.98874 5.09004 5.12982 5.21280 5.27383 5.38094 5.40563 5.44823 5.68725 5.74408 5.75890 5.82331 6.02084 6.32888 6.36289 6.80241 6.81012 6.83191 7.44773 7.60339 8.95011 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.014709 B = 0.005206 C = 0.004551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1903.185547 B = 5377.432287 C = 6151.673406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.111 4.111 3 C 0.144 3.856 4 H 0.076 0.924 5 C 0.067 3.933 6 O -0.574 6.574 7 N -0.714 5.714 8 C 0.510 3.490 9 O -0.562 6.562 10 C -0.111 4.111 11 C 0.049 3.951 12 H 0.038 0.962 13 C -0.460 4.460 14 H 0.032 0.968 15 C 0.024 3.976 16 N -0.953 5.953 17 Si 0.921 3.079 18 H -0.266 1.266 19 H -0.299 1.299 20 H -0.251 1.251 21 C -0.064 4.064 22 C -0.119 4.119 23 C -0.124 4.124 24 C -0.140 4.140 25 C -0.123 4.123 26 C -0.157 4.157 27 H 0.073 0.927 28 H 0.051 0.949 29 H 0.046 0.954 30 H 0.086 0.914 31 H 0.079 0.921 32 H 0.072 0.928 33 H 0.013 0.987 34 H 0.392 0.608 35 H 0.409 0.591 36 H 0.103 0.897 37 H 0.091 0.909 38 H 0.258 0.742 39 H 0.109 0.891 40 H 0.140 0.860 41 H 0.147 0.853 42 H 0.141 0.859 43 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.306 -14.024 5.305 17.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.149 4.149 3 C 0.039 3.961 4 H 0.094 0.906 5 C -0.012 4.012 6 O -0.381 6.381 7 N -0.368 5.368 8 C 0.298 3.702 9 O -0.439 6.439 10 C -0.151 4.151 11 C 0.030 3.970 12 H 0.056 0.944 13 C -0.498 4.498 14 H 0.051 0.949 15 C -0.172 4.172 16 N -0.595 5.595 17 Si 0.748 3.252 18 H -0.191 1.191 19 H -0.226 1.226 20 H -0.175 1.175 21 C -0.065 4.065 22 C -0.137 4.137 23 C -0.142 4.142 24 C -0.158 4.158 25 C -0.141 4.141 26 C -0.175 4.175 27 H 0.092 0.908 28 H 0.070 0.930 29 H 0.065 0.935 30 H 0.105 0.895 31 H 0.098 0.902 32 H 0.090 0.910 33 H 0.032 0.968 34 H 0.241 0.759 35 H 0.245 0.755 36 H 0.121 0.879 37 H 0.109 0.891 38 H 0.067 0.933 39 H 0.127 0.873 40 H 0.158 0.842 41 H 0.165 0.835 42 H 0.159 0.841 43 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -8.701 -13.504 4.626 16.717 hybrid contribution 0.735 0.818 -0.744 1.327 sum -7.966 -12.686 3.882 15.474 Atomic orbital electron populations 1.21780 0.94985 1.02376 1.01704 1.21602 0.96313 0.92869 1.04071 1.21109 0.92193 0.95080 0.87739 0.90628 1.22526 0.94610 0.93003 0.91036 1.86364 1.26751 1.71442 1.53537 1.45898 1.71087 1.06036 1.13797 1.21008 0.76076 0.82257 0.90882 1.90710 1.50095 1.64777 1.38278 1.21563 1.02890 0.95941 0.94750 1.18146 0.95496 0.91663 0.91707 0.94409 1.20785 0.91184 1.14783 1.23045 0.94929 1.25580 0.97394 0.97920 0.96296 1.70032 1.23642 1.29538 1.36278 0.86141 0.82153 0.79221 0.77673 1.19114 1.22569 1.17501 1.20528 0.93185 0.97088 0.95666 1.21011 0.99092 1.00780 0.92859 1.21409 0.96821 0.97769 0.98174 1.21347 0.95144 1.00597 0.98722 1.21345 1.00723 0.99313 0.92671 1.21214 0.96439 1.00913 0.98965 0.90849 0.92953 0.93499 0.89529 0.90244 0.91036 0.96840 0.75899 0.75464 0.87920 0.89109 0.93340 0.87329 0.84249 0.83482 0.84119 0.87403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.72 9.80 71.98 0.71 -2.02 16 2 C -0.11 -2.15 5.19 30.59 0.16 -1.99 16 3 C 0.14 3.98 2.37 44.99 0.11 4.09 16 4 H 0.08 2.42 7.58 -2.39 -0.02 2.40 16 5 C 0.07 1.89 6.85 71.98 0.49 2.38 16 6 O -0.57 -13.93 12.83 -148.98 -1.91 -15.84 16 7 N -0.71 -21.58 4.48 -442.52 -1.98 -23.56 16 8 C 0.51 20.64 7.54 87.66 0.66 21.31 16 9 O -0.56 -28.93 14.65 -3.01 -0.04 -28.97 16 10 C -0.11 -4.24 4.96 29.85 0.15 -4.09 16 11 C 0.05 2.31 1.21 -12.29 -0.01 2.29 16 12 H 0.04 1.91 4.70 -2.38 -0.01 1.90 16 13 C -0.46 -26.60 6.87 25.60 0.18 -26.42 16 14 H 0.03 2.07 8.06 -2.91 -0.02 2.05 16 15 C 0.02 1.50 5.47 84.65 0.46 1.96 16 16 N -0.95 -63.08 13.96 21.45 0.30 -62.78 16 17 Si 0.92 48.84 27.15 68.60 1.86 50.70 16 18 H -0.27 -13.43 7.11 99.48 0.71 -12.72 16 19 H -0.30 -15.95 7.11 99.48 0.71 -15.24 16 20 H -0.25 -12.68 6.06 99.48 0.60 -12.08 16 21 C -0.06 -2.67 4.55 -19.87 -0.09 -2.76 16 22 C -0.12 -4.56 8.87 22.27 0.20 -4.37 16 23 C -0.12 -3.85 10.05 22.27 0.22 -3.63 16 24 C -0.14 -3.95 10.05 22.27 0.22 -3.72 16 25 C -0.12 -3.76 10.05 22.27 0.22 -3.53 16 26 C -0.16 -5.90 9.43 22.27 0.21 -5.69 16 27 H 0.07 1.04 8.14 -2.38 -0.02 1.02 16 28 H 0.05 0.99 7.75 -2.38 -0.02 0.97 16 29 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.08 1.51 7.73 -2.39 -0.02 1.49 16 32 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 33 H 0.01 0.49 8.14 -2.38 -0.02 0.47 16 34 H 0.39 6.57 9.12 -74.06 -0.68 5.89 16 35 H 0.41 9.92 8.60 -92.71 -0.80 9.12 16 36 H 0.10 3.15 8.14 -2.38 -0.02 3.13 16 37 H 0.09 3.29 7.86 -2.39 -0.02 3.27 16 38 H 0.26 16.27 8.31 -92.71 -0.77 15.50 16 39 H 0.11 4.28 7.80 -2.91 -0.02 4.26 16 40 H 0.14 3.47 8.06 -2.91 -0.02 3.45 16 41 H 0.15 3.03 8.06 -2.91 -0.02 3.01 16 42 H 0.14 3.37 8.06 -2.91 -0.02 3.35 16 43 H 0.11 3.97 7.95 -2.91 -0.02 3.95 16 Total: -1.00 -79.09 355.06 1.54 -77.54 By element: Atomic # 1 Polarization: 29.66 SS G_CDS: -0.57 Total: 29.10 kcal Atomic # 6 Polarization: -30.07 SS G_CDS: 3.89 Total: -26.18 kcal Atomic # 7 Polarization: -84.66 SS G_CDS: -1.68 Total: -86.34 kcal Atomic # 8 Polarization: -42.86 SS G_CDS: -1.95 Total: -44.81 kcal Atomic # 14 Polarization: 48.84 SS G_CDS: 1.86 Total: 50.70 kcal Total: -79.09 1.54 -77.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356636845.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.742 kcal (2) G-P(sol) polarization free energy of solvation -79.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds