Wall clock time and date at job start Tue Mar 31 2020 06:28:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47204 * 2 1 4 4 H 1.09000 * 109.47433 * 305.00448 * 3 2 1 5 5 C 1.53005 * 109.47394 * 185.00134 * 3 2 1 6 6 O 1.42896 * 109.46858 * 305.00275 * 5 3 2 7 7 N 1.46505 * 109.47077 * 65.00309 * 3 2 1 8 8 C 1.34770 * 120.00096 * 205.00267 * 7 3 2 9 9 O 1.21282 * 120.00471 * 359.97438 * 8 7 3 10 10 C 1.50700 * 120.00252 * 179.97438 * 8 7 3 11 11 C 1.52994 * 109.47505 * 179.97438 * 10 8 7 12 12 H 1.08997 * 109.47674 * 305.00018 * 11 10 8 13 13 C 1.50703 * 109.47113 * 64.99927 * 11 10 8 14 14 H 1.08004 * 120.00335 * 234.68120 * 13 11 10 15 15 C 1.37878 * 120.00054 * 54.67764 * 13 11 10 16 16 N 1.31520 * 119.99983 * 4.87392 * 15 13 11 17 17 Si 1.86799 * 120.00119 * 184.87211 * 15 13 11 18 18 H 1.48503 * 109.46824 * 90.00377 * 17 15 13 19 19 H 1.48506 * 109.46963 * 209.99682 * 17 15 13 20 20 H 1.48492 * 109.47102 * 330.00222 * 17 15 13 21 21 C 1.50702 * 109.47489 * 184.99687 * 11 10 8 22 22 C 1.38228 * 120.00094 * 151.48717 * 21 11 10 23 23 C 1.38237 * 119.99925 * 179.79258 * 22 21 11 24 24 C 1.38241 * 119.99832 * 0.43945 * 23 22 21 25 25 C 1.38232 * 119.99978 * 359.81479 * 24 23 22 26 26 C 1.38232 * 120.00028 * 359.97243 * 25 24 23 27 27 H 1.09001 * 109.47114 * 59.99600 * 1 2 3 28 28 H 1.08997 * 109.47054 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46829 * 299.99299 * 1 2 3 30 30 H 1.09005 * 109.46875 * 240.00227 * 2 1 3 31 31 H 1.09000 * 109.47637 * 120.00388 * 2 1 3 32 32 H 1.08999 * 109.46987 * 65.00030 * 5 3 2 33 33 H 1.09001 * 109.47144 * 185.00296 * 5 3 2 34 34 H 0.96703 * 114.00218 * 179.97438 * 6 5 3 35 35 H 0.97003 * 119.99743 * 24.99663 * 7 3 2 36 36 H 1.09003 * 109.47082 * 59.99639 * 10 8 7 37 37 H 1.09003 * 109.46891 * 300.00039 * 10 8 7 38 38 H 0.97002 * 120.00077 * 179.97438 * 16 15 13 39 39 H 1.08004 * 120.00295 * 359.97438 * 22 21 11 40 40 H 1.07997 * 120.00031 * 180.27151 * 23 22 21 41 41 H 1.08002 * 119.99791 * 179.83480 * 24 23 22 42 42 H 1.07998 * 119.99579 * 180.02562 * 25 24 23 43 43 H 1.08001 * 120.00254 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5649 1.4443 -0.1258 6 8 4.1293 0.6404 0.9120 7 7 1.6525 2.0974 1.2519 8 6 1.5256 3.4383 1.2997 9 8 1.7327 4.1029 0.3065 10 6 1.1265 4.1120 2.5873 11 6 1.0558 5.6249 2.3707 12 1 2.0058 5.9796 1.9711 13 6 -0.0489 5.9418 1.3959 14 1 0.1626 6.5225 0.5101 15 6 -1.3296 5.4903 1.6346 16 7 -1.6080 4.8662 2.7583 17 14 -2.6692 5.7651 0.3621 18 1 -2.7048 4.6141 -0.5755 19 1 -3.9824 5.8882 1.0446 20 1 -2.3855 7.0111 -0.3941 21 6 0.7773 6.3081 3.6848 22 6 1.2282 7.5963 3.9033 23 6 0.9690 8.2245 5.1071 24 6 0.2666 7.5610 6.0958 25 6 -0.1798 6.2708 5.8792 26 6 0.0756 5.6443 4.6738 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5137 0.8901 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 3.8499 1.0377 -1.0961 33 1 3.9355 2.4655 -0.0366 34 1 5.0952 0.5956 0.8936 35 1 1.4871 1.5659 2.0463 36 1 1.8648 3.8897 3.3577 37 1 0.1502 3.7437 2.9025 38 1 -2.5091 4.5489 2.9265 39 1 1.7806 8.1132 3.1325 40 1 1.3176 9.2326 5.2762 41 1 0.0664 8.0508 7.0373 42 1 -0.7289 5.7527 6.6515 43 1 -0.2728 4.6361 4.5047 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356636846.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:14 Heat of formation + Delta-G solvation = -72.301255 kcal Electronic energy + Delta-G solvation = -23949.757830 eV Core-core repulsion = 20573.466652 eV Total energy + Delta-G solvation = -3376.291178 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.23813 -38.17077 -36.95709 -34.92599 -34.07609 -31.77061 -31.00938 -29.79980 -28.88445 -27.89335 -25.70397 -23.46912 -22.61817 -21.46351 -20.62820 -19.90514 -19.13195 -17.36433 -16.58092 -15.95482 -15.62286 -15.35864 -15.03104 -14.63498 -14.12372 -13.87150 -13.77020 -13.68863 -13.38443 -12.81550 -12.73442 -12.34903 -12.19761 -12.13765 -11.62364 -11.48449 -11.37545 -11.16430 -10.88445 -10.87529 -10.76020 -10.68950 -10.37326 -10.13422 -9.94800 -9.88606 -9.26138 -9.13637 -8.71929 -8.43047 -8.29428 -7.77490 -7.40837 -5.94271 -4.03800 2.52741 2.61419 3.32771 3.38434 3.43976 3.75374 3.92215 4.41350 4.45823 4.87874 5.00726 5.16822 5.27646 5.28286 5.44369 5.60747 5.75750 5.83846 5.84667 5.92762 6.00940 6.03160 6.05054 6.10348 6.35782 6.42497 6.45169 6.50779 6.63646 6.75427 6.81064 7.16254 7.17941 7.20824 7.29970 7.51558 7.57813 7.65086 7.72982 7.96504 8.12331 8.21474 8.35269 8.39915 8.92767 9.28601 9.59043 10.99753 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.014588 B = 0.005498 C = 0.004580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1918.966556 B = 5091.180764 C = 6112.070307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.122 4.122 3 C 0.149 3.851 4 H 0.095 0.905 5 C 0.064 3.936 6 O -0.568 6.568 7 N -0.734 5.734 8 C 0.525 3.475 9 O -0.533 6.533 10 C -0.138 4.138 11 C 0.089 3.911 12 H 0.036 0.964 13 C -0.468 4.468 14 H 0.058 0.942 15 C 0.060 3.940 16 N -0.889 5.889 17 Si 0.891 3.109 18 H -0.283 1.283 19 H -0.289 1.289 20 H -0.276 1.276 21 C -0.027 4.027 22 C -0.132 4.132 23 C -0.142 4.142 24 C -0.154 4.154 25 C -0.143 4.143 26 C -0.068 4.068 27 H 0.053 0.947 28 H 0.051 0.949 29 H 0.061 0.939 30 H 0.067 0.933 31 H 0.073 0.927 32 H 0.045 0.955 33 H 0.052 0.948 34 H 0.373 0.627 35 H 0.395 0.605 36 H 0.051 0.949 37 H 0.131 0.869 38 H 0.260 0.740 39 H 0.105 0.895 40 H 0.101 0.899 41 H 0.099 0.901 42 H 0.101 0.899 43 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.912 -8.298 0.363 10.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.160 4.160 3 C 0.043 3.957 4 H 0.113 0.887 5 C -0.015 4.015 6 O -0.373 6.373 7 N -0.388 5.388 8 C 0.314 3.686 9 O -0.408 6.408 10 C -0.178 4.178 11 C 0.069 3.931 12 H 0.054 0.946 13 C -0.506 4.506 14 H 0.076 0.924 15 C -0.140 4.140 16 N -0.529 5.529 17 Si 0.720 3.280 18 H -0.209 1.209 19 H -0.215 1.215 20 H -0.201 1.201 21 C -0.027 4.027 22 C -0.150 4.150 23 C -0.160 4.160 24 C -0.173 4.173 25 C -0.161 4.161 26 C -0.086 4.086 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.080 0.920 30 H 0.086 0.914 31 H 0.091 0.909 32 H 0.064 0.936 33 H 0.070 0.930 34 H 0.218 0.782 35 H 0.229 0.771 36 H 0.070 0.930 37 H 0.149 0.851 38 H 0.070 0.930 39 H 0.123 0.877 40 H 0.119 0.881 41 H 0.117 0.883 42 H 0.119 0.881 43 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 6.245 -7.933 -0.156 10.098 hybrid contribution -0.516 0.089 -0.514 0.734 sum 5.729 -7.845 -0.670 9.737 Atomic orbital electron populations 1.21785 0.95449 1.01117 1.02738 1.21662 0.96093 0.95529 1.02749 1.20917 0.91496 0.93544 0.89734 0.88737 1.22705 0.95064 0.94383 0.89384 1.86473 1.24738 1.72271 1.53801 1.46128 1.72735 1.07664 1.12250 1.21142 0.74794 0.80835 0.91871 1.90593 1.49177 1.63909 1.37140 1.21913 1.03831 0.99860 0.92225 1.17623 0.96473 0.89099 0.89868 0.94568 1.20974 0.92289 1.32220 1.05081 0.92355 1.24880 0.98300 0.95626 0.95186 1.69683 1.20251 1.40137 1.22825 0.86588 0.81114 0.78601 0.81728 1.20910 1.21472 1.20069 1.20350 0.93791 0.93645 0.94946 1.20894 1.02055 0.95692 0.96392 1.20794 1.01577 0.98822 0.94817 1.20761 1.02093 0.95844 0.98568 1.21044 1.01672 0.95411 0.98022 1.21364 0.94709 1.01837 0.90734 0.92814 0.93029 0.92014 0.91445 0.90868 0.93642 0.92993 0.78158 0.77131 0.93015 0.85144 0.92999 0.87711 0.88133 0.88332 0.88109 0.84273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.94 9.80 37.16 0.36 -1.58 16 2 C -0.12 -1.49 5.19 -26.73 -0.14 -1.63 16 3 C 0.15 2.20 2.37 -67.93 -0.16 2.04 16 4 H 0.09 1.58 7.58 -51.93 -0.39 1.19 16 5 C 0.06 0.83 6.85 37.16 0.25 1.09 16 6 O -0.57 -6.79 12.83 -35.23 -0.45 -7.25 16 7 N -0.73 -12.35 4.48 -53.80 -0.24 -12.59 16 8 C 0.52 11.10 7.54 -10.99 -0.08 11.02 16 9 O -0.53 -13.06 14.65 5.56 0.08 -12.98 16 10 C -0.14 -2.99 4.07 -27.89 -0.11 -3.10 16 11 C 0.09 2.14 1.97 -92.92 -0.18 1.96 16 12 H 0.04 0.90 7.91 -51.93 -0.41 0.49 16 13 C -0.47 -12.62 7.27 -34.44 -0.25 -12.87 16 14 H 0.06 1.66 7.82 -52.48 -0.41 1.25 16 15 C 0.06 1.57 5.12 -17.82 -0.09 1.48 16 16 N -0.89 -22.76 7.99 55.43 0.44 -22.31 16 17 Si 0.89 21.63 29.54 -169.99 -5.02 16.61 16 18 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 19 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 20 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 21 C -0.03 -0.62 4.69 -104.62 -0.49 -1.11 16 22 C -0.13 -2.86 9.71 -39.59 -0.38 -3.24 16 23 C -0.14 -2.77 10.05 -39.58 -0.40 -3.16 16 24 C -0.15 -2.94 10.05 -39.58 -0.40 -3.34 16 25 C -0.14 -2.88 10.05 -39.59 -0.40 -3.27 16 26 C -0.07 -1.51 7.45 -39.58 -0.30 -1.80 16 27 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.06 0.87 7.75 -51.93 -0.40 0.47 16 30 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.07 0.89 7.73 -51.93 -0.40 0.49 16 32 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.37 2.84 9.12 45.56 0.42 3.26 16 35 H 0.40 5.97 8.60 -40.82 -0.35 5.61 16 36 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.13 2.99 4.71 -51.93 -0.24 2.74 16 38 H 0.26 6.52 8.31 -40.82 -0.34 6.18 16 39 H 0.10 2.15 8.06 -52.48 -0.42 1.73 16 40 H 0.10 1.68 8.06 -52.49 -0.42 1.25 16 41 H 0.10 1.60 8.06 -52.49 -0.42 1.17 16 42 H 0.10 1.79 8.06 -52.49 -0.42 1.36 16 43 H 0.14 3.15 5.18 -52.49 -0.27 2.88 16 LS Contribution 348.76 15.07 5.26 5.26 Total: -1.00 -29.88 348.76 -8.53 -38.41 By element: Atomic # 1 Polarization: 18.19 SS G_CDS: -5.83 Total: 12.36 kcal Atomic # 6 Polarization: -14.75 SS G_CDS: -2.76 Total: -17.52 kcal Atomic # 7 Polarization: -35.11 SS G_CDS: 0.20 Total: -34.90 kcal Atomic # 8 Polarization: -19.85 SS G_CDS: -0.37 Total: -20.22 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -29.88 -8.53 -38.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356636846.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.887 kcal (2) G-P(sol) polarization free energy of solvation -29.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds