Wall clock time and date at job start Tue Mar 31 2020 06:28:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47204 * 2 1 4 4 H 1.09000 * 109.47433 * 305.00448 * 3 2 1 5 5 C 1.53005 * 109.47394 * 185.00134 * 3 2 1 6 6 O 1.42896 * 109.46858 * 305.00275 * 5 3 2 7 7 N 1.46505 * 109.47077 * 65.00309 * 3 2 1 8 8 C 1.34770 * 120.00096 * 205.00267 * 7 3 2 9 9 O 1.21282 * 120.00471 * 359.97438 * 8 7 3 10 10 C 1.50700 * 120.00252 * 179.97438 * 8 7 3 11 11 C 1.52994 * 109.47505 * 179.97438 * 10 8 7 12 12 H 1.08997 * 109.47674 * 305.00018 * 11 10 8 13 13 C 1.50703 * 109.47113 * 64.99927 * 11 10 8 14 14 H 1.08004 * 120.00335 * 234.68120 * 13 11 10 15 15 C 1.37878 * 120.00054 * 54.67764 * 13 11 10 16 16 N 1.31520 * 119.99983 * 4.87392 * 15 13 11 17 17 Si 1.86799 * 120.00119 * 184.87211 * 15 13 11 18 18 H 1.48503 * 109.46824 * 90.00377 * 17 15 13 19 19 H 1.48506 * 109.46963 * 209.99682 * 17 15 13 20 20 H 1.48492 * 109.47102 * 330.00222 * 17 15 13 21 21 C 1.50702 * 109.47489 * 184.99687 * 11 10 8 22 22 C 1.38228 * 120.00094 * 151.48717 * 21 11 10 23 23 C 1.38237 * 119.99925 * 179.79258 * 22 21 11 24 24 C 1.38241 * 119.99832 * 0.43945 * 23 22 21 25 25 C 1.38232 * 119.99978 * 359.81479 * 24 23 22 26 26 C 1.38232 * 120.00028 * 359.97243 * 25 24 23 27 27 H 1.09001 * 109.47114 * 59.99600 * 1 2 3 28 28 H 1.08997 * 109.47054 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46829 * 299.99299 * 1 2 3 30 30 H 1.09005 * 109.46875 * 240.00227 * 2 1 3 31 31 H 1.09000 * 109.47637 * 120.00388 * 2 1 3 32 32 H 1.08999 * 109.46987 * 65.00030 * 5 3 2 33 33 H 1.09001 * 109.47144 * 185.00296 * 5 3 2 34 34 H 0.96703 * 114.00218 * 179.97438 * 6 5 3 35 35 H 0.97003 * 119.99743 * 24.99663 * 7 3 2 36 36 H 1.09003 * 109.47082 * 59.99639 * 10 8 7 37 37 H 1.09003 * 109.46891 * 300.00039 * 10 8 7 38 38 H 0.97002 * 120.00077 * 179.97438 * 16 15 13 39 39 H 1.08004 * 120.00295 * 359.97438 * 22 21 11 40 40 H 1.07997 * 120.00031 * 180.27151 * 23 22 21 41 41 H 1.08002 * 119.99791 * 179.83480 * 24 23 22 42 42 H 1.07998 * 119.99579 * 180.02562 * 25 24 23 43 43 H 1.08001 * 120.00254 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5649 1.4443 -0.1258 6 8 4.1293 0.6404 0.9120 7 7 1.6525 2.0974 1.2519 8 6 1.5256 3.4383 1.2997 9 8 1.7327 4.1029 0.3065 10 6 1.1265 4.1120 2.5873 11 6 1.0558 5.6249 2.3707 12 1 2.0058 5.9796 1.9711 13 6 -0.0489 5.9418 1.3959 14 1 0.1626 6.5225 0.5101 15 6 -1.3296 5.4903 1.6346 16 7 -1.6080 4.8662 2.7583 17 14 -2.6692 5.7651 0.3621 18 1 -2.7048 4.6141 -0.5755 19 1 -3.9824 5.8882 1.0446 20 1 -2.3855 7.0111 -0.3941 21 6 0.7773 6.3081 3.6848 22 6 1.2282 7.5963 3.9033 23 6 0.9690 8.2245 5.1071 24 6 0.2666 7.5610 6.0958 25 6 -0.1798 6.2708 5.8792 26 6 0.0756 5.6443 4.6738 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5137 0.8901 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 3.8499 1.0377 -1.0961 33 1 3.9355 2.4655 -0.0366 34 1 5.0952 0.5956 0.8936 35 1 1.4871 1.5659 2.0463 36 1 1.8648 3.8897 3.3577 37 1 0.1502 3.7437 2.9025 38 1 -2.5091 4.5489 2.9265 39 1 1.7806 8.1132 3.1325 40 1 1.3176 9.2326 5.2762 41 1 0.0664 8.0508 7.0373 42 1 -0.7289 5.7527 6.6515 43 1 -0.2728 4.6361 4.5047 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356636846.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:13 Heat of formation + Delta-G solvation = -91.414465 kcal Electronic energy + Delta-G solvation = -23950.586641 eV Core-core repulsion = 20573.466652 eV Total energy + Delta-G solvation = -3377.119989 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.80712 -39.74053 -38.22420 -36.21837 -35.78403 -33.20558 -32.82925 -31.40457 -30.29421 -29.30887 -27.55891 -24.73190 -24.19781 -23.04974 -21.99930 -21.35807 -20.82570 -18.47741 -18.31532 -17.67889 -16.99146 -16.91063 -16.83124 -16.08613 -15.49171 -15.40400 -15.21607 -15.11191 -14.67478 -14.50683 -14.33360 -13.78321 -13.52468 -13.37140 -13.28564 -13.17641 -13.08060 -12.82306 -12.69582 -12.31063 -12.20361 -11.95458 -11.84765 -11.75142 -11.67181 -11.06230 -11.04172 -10.92579 -10.57579 -10.23792 -9.80689 -9.39340 -9.10957 -7.93365 -6.09216 0.89589 1.00922 1.35580 1.38204 1.46303 2.08339 2.44832 2.51965 3.20482 3.38406 3.44612 3.79281 4.07858 4.25395 4.30804 4.36326 4.42788 4.47136 4.52850 4.55027 4.70678 4.74873 4.78807 4.83541 4.91891 4.98496 5.06803 5.09340 5.15550 5.24014 5.39975 5.42999 5.54832 5.63749 5.68659 5.79584 5.91496 5.95510 6.10455 6.37605 6.43517 6.58906 6.82301 6.89174 6.90616 7.52566 7.66924 8.95628 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.014588 B = 0.005498 C = 0.004580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1918.966556 B = 5091.180764 C = 6112.070307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.110 4.110 3 C 0.139 3.861 4 H 0.070 0.930 5 C 0.073 3.927 6 O -0.575 6.575 7 N -0.718 5.718 8 C 0.521 3.479 9 O -0.575 6.575 10 C -0.128 4.128 11 C 0.090 3.910 12 H 0.013 0.987 13 C -0.489 4.489 14 H 0.027 0.973 15 C 0.034 3.966 16 N -0.884 5.884 17 Si 0.929 3.071 18 H -0.285 1.285 19 H -0.278 1.278 20 H -0.285 1.285 21 C -0.051 4.051 22 C -0.152 4.152 23 C -0.140 4.140 24 C -0.149 4.149 25 C -0.147 4.147 26 C -0.081 4.081 27 H 0.041 0.959 28 H 0.074 0.926 29 H 0.042 0.958 30 H 0.091 0.909 31 H 0.080 0.920 32 H 0.074 0.926 33 H 0.025 0.975 34 H 0.393 0.607 35 H 0.406 0.594 36 H 0.070 0.930 37 H 0.122 0.878 38 H 0.261 0.739 39 H 0.102 0.898 40 H 0.132 0.868 41 H 0.136 0.864 42 H 0.126 0.874 43 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.864 -9.361 1.927 11.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.148 4.148 3 C 0.034 3.966 4 H 0.088 0.912 5 C -0.006 4.006 6 O -0.383 6.383 7 N -0.371 5.371 8 C 0.310 3.690 9 O -0.453 6.453 10 C -0.169 4.169 11 C 0.071 3.929 12 H 0.031 0.969 13 C -0.527 4.527 14 H 0.045 0.955 15 C -0.165 4.165 16 N -0.523 5.523 17 Si 0.757 3.243 18 H -0.211 1.211 19 H -0.204 1.204 20 H -0.210 1.210 21 C -0.052 4.052 22 C -0.170 4.170 23 C -0.158 4.158 24 C -0.166 4.166 25 C -0.165 4.165 26 C -0.100 4.100 27 H 0.060 0.940 28 H 0.093 0.907 29 H 0.061 0.939 30 H 0.109 0.891 31 H 0.099 0.901 32 H 0.092 0.908 33 H 0.043 0.957 34 H 0.243 0.757 35 H 0.241 0.759 36 H 0.088 0.912 37 H 0.139 0.861 38 H 0.071 0.929 39 H 0.120 0.880 40 H 0.150 0.850 41 H 0.154 0.846 42 H 0.144 0.856 43 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 6.214 -9.046 1.438 11.068 hybrid contribution -0.443 0.416 -0.952 1.129 sum 5.771 -8.629 0.486 10.393 Atomic orbital electron populations 1.21784 0.95948 1.02135 1.01194 1.21600 0.95497 0.93465 1.04194 1.21133 0.93079 0.94707 0.87636 0.91169 1.22471 0.93542 0.93476 0.91097 1.86412 1.26801 1.71610 1.53450 1.45955 1.71198 1.06327 1.13613 1.21093 0.74651 0.82140 0.91117 1.90572 1.51343 1.65176 1.38244 1.21738 1.03762 0.98297 0.93058 1.17510 0.94372 0.90816 0.90239 0.96865 1.20929 0.93790 1.32946 1.05060 0.95484 1.25226 0.99089 0.95766 0.96434 1.69770 1.20329 1.39561 1.22631 0.86013 0.80030 0.77833 0.80417 1.21147 1.20381 1.21049 1.20320 0.95500 0.94550 0.94834 1.21072 1.02721 0.95520 0.97708 1.21156 1.00754 1.00118 0.93743 1.21198 1.00407 0.95307 0.99732 1.21362 1.01365 0.96096 0.97656 1.21318 0.95307 1.01678 0.91665 0.94011 0.90719 0.93905 0.89090 0.90118 0.90781 0.95661 0.75749 0.75925 0.91198 0.86093 0.92902 0.87967 0.84995 0.84586 0.85582 0.85262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.70 9.80 71.98 0.71 -2.99 16 2 C -0.11 -2.46 5.19 30.59 0.16 -2.30 16 3 C 0.14 4.08 2.37 44.99 0.11 4.19 16 4 H 0.07 2.42 7.58 -2.39 -0.02 2.40 16 5 C 0.07 1.84 6.85 71.98 0.49 2.33 16 6 O -0.58 -12.54 12.83 -148.98 -1.91 -14.45 16 7 N -0.72 -24.37 4.48 -442.53 -1.98 -26.35 16 8 C 0.52 22.85 7.54 87.66 0.66 23.52 16 9 O -0.57 -29.67 14.65 -3.04 -0.04 -29.72 16 10 C -0.13 -5.72 4.07 29.85 0.12 -5.60 16 11 C 0.09 4.55 1.97 -12.29 -0.02 4.52 16 12 H 0.01 0.69 7.91 -2.39 -0.02 0.67 16 13 C -0.49 -27.61 7.27 25.60 0.19 -27.43 16 14 H 0.03 1.64 7.82 -2.91 -0.02 1.62 16 15 C 0.03 1.85 5.12 84.65 0.43 2.28 16 16 N -0.88 -45.52 7.99 21.45 0.17 -45.35 16 17 Si 0.93 45.00 29.54 68.60 2.03 47.03 16 18 H -0.29 -13.83 7.11 99.48 0.71 -13.13 16 19 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 20 H -0.28 -14.14 7.11 99.48 0.71 -13.43 16 21 C -0.05 -2.42 4.69 -19.87 -0.09 -2.51 16 22 C -0.15 -6.59 9.71 22.27 0.22 -6.37 16 23 C -0.14 -5.12 10.05 22.27 0.22 -4.90 16 24 C -0.15 -5.15 10.05 22.27 0.22 -4.92 16 25 C -0.15 -5.54 10.05 22.27 0.22 -5.32 16 26 C -0.08 -3.56 7.45 22.27 0.17 -3.40 16 27 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 28 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 29 H 0.04 1.18 7.75 -2.39 -0.02 1.16 16 30 H 0.09 1.66 8.14 -2.38 -0.02 1.64 16 31 H 0.08 1.73 7.73 -2.39 -0.02 1.72 16 32 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.03 0.77 8.14 -2.39 -0.02 0.75 16 34 H 0.39 5.07 9.12 -74.06 -0.68 4.39 16 35 H 0.41 12.06 8.60 -92.71 -0.80 11.26 16 36 H 0.07 2.78 8.14 -2.39 -0.02 2.76 16 37 H 0.12 5.66 4.71 -2.39 -0.01 5.65 16 38 H 0.26 13.02 8.31 -92.71 -0.77 12.25 16 39 H 0.10 4.33 8.06 -2.91 -0.02 4.31 16 40 H 0.13 3.95 8.06 -2.91 -0.02 3.92 16 41 H 0.14 3.71 8.06 -2.91 -0.02 3.68 16 42 H 0.13 4.06 8.06 -2.91 -0.02 4.04 16 43 H 0.13 5.85 5.18 -2.91 -0.02 5.84 16 Total: -1.00 -66.16 348.76 1.61 -64.55 By element: Atomic # 1 Polarization: 33.66 SS G_CDS: -0.46 Total: 33.20 kcal Atomic # 6 Polarization: -32.71 SS G_CDS: 3.80 Total: -28.91 kcal Atomic # 7 Polarization: -69.89 SS G_CDS: -1.81 Total: -71.70 kcal Atomic # 8 Polarization: -42.22 SS G_CDS: -1.96 Total: -44.17 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.03 kcal Total: -66.16 1.61 -64.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356636846.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.861 kcal (2) G-P(sol) polarization free energy of solvation -66.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds