Wall clock time and date at job start Tue Mar 31 2020 06:10:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.08998 * 109.47565 * 305.00629 * 3 2 1 5 5 C 1.50695 * 109.47581 * 185.00152 * 3 2 1 6 6 H 1.08004 * 120.00025 * 240.00388 * 5 3 2 7 7 C 1.37880 * 120.00044 * 59.99984 * 5 3 2 8 8 N 1.31511 * 120.00046 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00012 * 180.02562 * 7 5 3 10 10 H 1.48506 * 109.47239 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.46949 * 120.00034 * 9 7 5 12 12 H 1.48495 * 109.47204 * 240.00102 * 9 7 5 13 13 N 1.46504 * 109.46822 * 64.99847 * 3 2 1 14 14 C 1.34773 * 120.00316 * 275.00099 * 13 3 2 15 15 O 1.21283 * 120.00233 * 0.02562 * 14 13 3 16 16 C 1.50697 * 120.00012 * 179.97438 * 14 13 3 17 17 C 1.50700 * 109.47232 * 180.02562 * 16 14 13 18 18 C 1.38167 * 120.02774 * 264.72852 * 17 16 14 19 19 C 1.38246 * 120.05600 * 179.76893 * 18 17 16 20 20 C 1.50703 * 119.94708 * 180.25348 * 19 18 17 21 21 C 1.38296 * 120.11032 * 0.50567 * 19 18 17 22 22 C 1.38121 * 120.05360 * 359.74620 * 21 19 18 23 23 C 1.38703 * 120.02904 * 85.00274 * 17 16 14 24 24 O 1.35903 * 120.05712 * 359.97438 * 23 17 16 25 25 C 1.42897 * 117.00544 * 180.02562 * 24 23 17 26 26 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 27 27 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 29 29 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 30 30 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 31 31 H 0.96998 * 120.00524 * 180.02562 * 8 7 5 32 32 H 0.97003 * 119.99976 * 95.00125 * 13 3 2 33 33 H 1.08995 * 109.47634 * 300.00249 * 16 14 13 34 34 H 1.09010 * 109.46880 * 60.00413 * 16 14 13 35 35 H 1.08001 * 119.97362 * 0.02562 * 18 17 16 36 36 H 1.09003 * 109.46918 * 270.25084 * 20 19 18 37 37 H 1.08998 * 109.46640 * 30.24900 * 20 19 18 38 38 H 1.08997 * 109.46793 * 150.25133 * 20 19 18 39 39 H 1.07996 * 119.97324 * 179.72515 * 21 19 18 40 40 H 1.07997 * 120.03034 * 179.97438 * 22 21 19 41 41 H 1.08998 * 109.47532 * 180.02562 * 25 24 23 42 42 H 1.09008 * 109.46980 * 300.00581 * 25 24 23 43 43 H 1.09003 * 109.47002 * 59.99813 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8785 -1.2280 8 7 3.4062 0.3375 -2.1734 9 14 6.0049 0.8802 -1.3812 10 1 6.5988 1.5443 -0.1931 11 1 6.4961 -0.5189 -1.4628 12 1 6.3999 1.6158 -2.6092 13 7 1.6524 2.0974 1.2518 14 6 0.4351 2.6643 1.3670 15 8 -0.3397 2.6319 0.4345 16 6 0.0363 3.3375 2.6549 17 6 -1.3616 3.8850 2.5237 18 6 -1.5563 5.2049 2.1644 19 6 -2.8384 5.7065 2.0391 20 6 -3.0480 7.1450 1.6416 21 6 -3.9290 4.8919 2.2831 22 6 -3.7396 3.5732 2.6476 23 6 -2.4538 3.0660 2.7689 24 8 -2.2649 1.7687 3.1273 25 6 -3.4354 0.9838 3.3637 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 3.8292 -0.0609 -2.9500 32 1 2.2719 2.1231 1.9979 33 1 0.0673 2.6129 3.4685 34 1 0.7277 4.1529 2.8680 35 1 -0.7062 5.8442 1.9772 36 1 -3.0831 7.7676 2.5356 37 1 -2.2249 7.4695 1.0049 38 1 -3.9874 7.2381 1.0968 39 1 -4.9296 5.2872 2.1889 40 1 -4.5916 2.9374 2.8384 41 1 -3.1437 -0.0289 3.6418 42 1 -4.0147 1.4298 4.1722 43 1 -4.0406 0.9522 2.4577 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358054746.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:33 Heat of formation + Delta-G solvation = -65.508717 kcal Electronic energy + Delta-G solvation = -23688.540254 eV Core-core repulsion = 20312.543622 eV Total energy + Delta-G solvation = -3375.996632 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.28973 -38.66712 -37.52875 -34.99994 -33.00808 -32.25852 -31.52957 -30.77879 -27.96969 -27.80720 -26.49440 -25.74071 -23.01721 -22.02756 -21.04876 -19.86765 -19.16168 -17.90626 -16.96343 -16.39603 -15.82234 -15.46926 -15.20199 -14.80920 -14.53119 -14.23622 -14.09285 -13.78346 -13.62732 -13.05192 -12.92293 -12.57460 -12.49530 -12.13362 -12.01528 -11.82700 -11.58023 -11.40214 -11.20529 -11.04167 -10.91873 -10.78562 -10.75670 -10.68705 -10.25073 -10.07663 -9.53598 -9.02114 -8.93234 -8.60633 -8.43045 -7.84370 -7.68317 -6.07302 -4.16294 1.44289 1.55169 3.26190 3.33998 3.36720 3.39504 3.60691 3.77961 4.29833 4.53791 4.78779 4.87205 4.95568 5.05465 5.17100 5.23838 5.31232 5.37180 5.42933 5.50287 5.59970 5.70046 5.71352 5.82593 5.86151 5.94083 6.21634 6.40379 6.47564 6.52840 6.57175 6.70255 6.76844 6.91664 7.15076 7.29279 7.47368 7.51700 7.58949 7.69562 7.83085 7.98695 8.25726 8.79851 8.86653 9.29904 9.52165 10.98012 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.021673 B = 0.004020 C = 0.003642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.640635 B = 6963.137187 C = 7685.882210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.126 4.126 3 C 0.271 3.729 4 H 0.047 0.953 5 C -0.532 4.532 6 H 0.061 0.939 7 C 0.066 3.934 8 N -0.882 5.882 9 Si 0.900 3.100 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.713 5.713 14 C 0.507 3.493 15 O -0.542 6.542 16 C -0.100 4.100 17 C -0.079 4.079 18 C -0.071 4.071 19 C -0.127 4.127 20 C -0.106 4.106 21 C -0.087 4.087 22 C -0.206 4.206 23 C 0.138 3.862 24 O -0.309 6.309 25 C 0.030 3.970 26 H 0.044 0.956 27 H 0.019 0.981 28 H 0.047 0.953 29 H 0.029 0.971 30 H 0.097 0.903 31 H 0.263 0.737 32 H 0.387 0.613 33 H 0.097 0.903 34 H 0.093 0.907 35 H 0.126 0.874 36 H 0.064 0.936 37 H 0.064 0.936 38 H 0.062 0.938 39 H 0.119 0.881 40 H 0.124 0.876 41 H 0.097 0.903 42 H 0.051 0.949 43 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.654 7.055 12.281 18.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.165 4.165 3 C 0.169 3.831 4 H 0.065 0.935 5 C -0.570 4.570 6 H 0.079 0.921 7 C -0.137 4.137 8 N -0.520 5.520 9 Si 0.727 3.273 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.361 5.361 14 C 0.291 3.709 15 O -0.420 6.420 16 C -0.140 4.140 17 C -0.081 4.081 18 C -0.089 4.089 19 C -0.127 4.127 20 C -0.163 4.163 21 C -0.105 4.105 22 C -0.225 4.225 23 C 0.093 3.907 24 O -0.222 6.222 25 C -0.066 4.066 26 H 0.063 0.937 27 H 0.038 0.962 28 H 0.066 0.934 29 H 0.048 0.952 30 H 0.115 0.885 31 H 0.073 0.927 32 H 0.219 0.781 33 H 0.115 0.885 34 H 0.112 0.888 35 H 0.144 0.856 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.081 0.919 39 H 0.137 0.863 40 H 0.142 0.858 41 H 0.116 0.884 42 H 0.069 0.931 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -12.999 6.807 11.425 18.596 hybrid contribution 0.975 -0.212 0.189 1.016 sum -12.024 6.595 11.614 17.970 Atomic orbital electron populations 1.21831 0.98307 0.97775 1.01457 1.21912 0.92655 0.99897 1.02030 1.18733 0.93990 0.89139 0.81211 0.93497 1.21301 0.90881 1.38695 1.06149 0.92088 1.24890 0.98494 0.94910 0.95440 1.69912 1.34948 1.37817 1.09348 0.86425 0.85058 0.77724 0.78070 1.19756 1.20931 1.20936 1.46463 1.14760 1.56448 1.18398 1.20162 0.82605 0.79330 0.88779 1.90668 1.51257 1.59555 1.40521 1.20571 0.93715 1.01302 0.98392 1.18675 0.92878 0.92945 1.03557 1.20718 0.96753 0.93936 0.97514 1.19717 0.92975 0.96607 1.03378 1.20685 1.02330 0.92283 1.01015 1.20703 0.98226 0.92910 0.98650 1.21107 0.95531 0.97315 1.08557 1.18752 0.93171 0.83508 0.95279 1.86101 1.33438 1.19717 1.82977 1.23008 0.87742 0.95369 1.00435 0.93742 0.96208 0.93423 0.95180 0.88523 0.92709 0.78144 0.88450 0.88826 0.85598 0.91733 0.91654 0.91939 0.86259 0.85783 0.88417 0.93071 0.92745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.19 8.51 37.16 0.32 -2.88 16 2 C -0.13 -3.16 5.45 -26.73 -0.15 -3.31 16 3 C 0.27 6.98 2.24 -69.08 -0.15 6.82 16 4 H 0.05 1.41 7.58 -51.93 -0.39 1.01 16 5 C -0.53 -14.24 8.73 -34.44 -0.30 -14.54 16 6 H 0.06 1.56 7.74 -52.48 -0.41 1.16 16 7 C 0.07 1.78 5.29 -17.82 -0.09 1.69 16 8 N -0.88 -25.12 11.29 55.43 0.63 -24.49 16 9 Si 0.90 20.81 29.54 -169.99 -5.02 15.79 16 10 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 11 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 12 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 13 N -0.71 -15.14 5.02 -54.94 -0.28 -15.42 16 14 C 0.51 10.37 6.39 -10.99 -0.07 10.30 16 15 O -0.54 -13.13 13.17 5.56 0.07 -13.06 16 16 C -0.10 -1.55 5.55 -29.04 -0.16 -1.72 16 17 C -0.08 -1.26 4.39 -104.48 -0.46 -1.72 16 18 C -0.07 -1.02 9.33 -39.60 -0.37 -1.39 16 19 C -0.13 -1.62 5.88 -104.60 -0.62 -2.24 16 20 C -0.11 -1.04 10.01 36.01 0.36 -0.68 16 21 C -0.09 -1.07 9.69 -39.60 -0.38 -1.46 16 22 C -0.21 -2.74 9.04 -39.43 -0.36 -3.10 16 23 C 0.14 2.15 6.66 -39.22 -0.26 1.88 16 24 O -0.31 -4.73 9.63 -19.43 -0.19 -4.91 16 25 C 0.03 0.32 9.81 101.05 0.99 1.31 16 26 H 0.04 1.03 5.64 -51.93 -0.29 0.73 16 27 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 28 H 0.05 1.19 7.85 -51.93 -0.41 0.78 16 29 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.10 2.67 5.95 -51.93 -0.31 2.36 16 31 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 32 H 0.39 7.14 8.54 -40.82 -0.35 6.79 16 33 H 0.10 1.40 7.69 -51.93 -0.40 1.00 16 34 H 0.09 1.21 8.05 -51.92 -0.42 0.79 16 35 H 0.13 1.60 8.06 -52.49 -0.42 1.18 16 36 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.06 0.63 8.09 -51.93 -0.42 0.21 16 38 H 0.06 0.54 8.08 -51.93 -0.42 0.12 16 39 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 40 H 0.12 1.34 6.30 -52.49 -0.33 1.01 16 41 H 0.10 0.89 8.14 -51.93 -0.42 0.46 16 42 H 0.05 0.44 7.66 -51.92 -0.40 0.04 16 43 H 0.05 0.57 7.66 -51.93 -0.40 0.17 16 LS Contribution 350.79 15.07 5.29 5.29 Total: -1.00 -32.37 350.79 -7.81 -40.18 By element: Atomic # 1 Polarization: 14.25 SS G_CDS: -6.61 Total: 7.63 kcal Atomic # 6 Polarization: -9.32 SS G_CDS: -1.70 Total: -11.02 kcal Atomic # 7 Polarization: -40.26 SS G_CDS: 0.35 Total: -39.91 kcal Atomic # 8 Polarization: -17.85 SS G_CDS: -0.11 Total: -17.97 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -32.37 -7.81 -40.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358054746.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.325 kcal (2) G-P(sol) polarization free energy of solvation -32.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds