Wall clock time and date at job start Tue Mar 31 2020 06:10:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.08998 * 109.47565 * 305.00629 * 3 2 1 5 5 C 1.50695 * 109.47581 * 185.00152 * 3 2 1 6 6 H 1.08004 * 120.00025 * 240.00388 * 5 3 2 7 7 C 1.37880 * 120.00044 * 59.99984 * 5 3 2 8 8 N 1.31511 * 120.00046 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00012 * 180.02562 * 7 5 3 10 10 H 1.48506 * 109.47239 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.46949 * 120.00034 * 9 7 5 12 12 H 1.48495 * 109.47204 * 240.00102 * 9 7 5 13 13 N 1.46504 * 109.46822 * 64.99847 * 3 2 1 14 14 C 1.34773 * 120.00316 * 275.00099 * 13 3 2 15 15 O 1.21283 * 120.00233 * 0.02562 * 14 13 3 16 16 C 1.50697 * 120.00012 * 179.97438 * 14 13 3 17 17 C 1.50700 * 109.47232 * 180.02562 * 16 14 13 18 18 C 1.38167 * 120.02774 * 264.72852 * 17 16 14 19 19 C 1.38246 * 120.05600 * 179.76893 * 18 17 16 20 20 C 1.50703 * 119.94708 * 180.25348 * 19 18 17 21 21 C 1.38296 * 120.11032 * 0.50567 * 19 18 17 22 22 C 1.38121 * 120.05360 * 359.74620 * 21 19 18 23 23 C 1.38703 * 120.02904 * 85.00274 * 17 16 14 24 24 O 1.35903 * 120.05712 * 359.97438 * 23 17 16 25 25 C 1.42897 * 117.00544 * 180.02562 * 24 23 17 26 26 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 27 27 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 29 29 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 30 30 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 31 31 H 0.96998 * 120.00524 * 180.02562 * 8 7 5 32 32 H 0.97003 * 119.99976 * 95.00125 * 13 3 2 33 33 H 1.08995 * 109.47634 * 300.00249 * 16 14 13 34 34 H 1.09010 * 109.46880 * 60.00413 * 16 14 13 35 35 H 1.08001 * 119.97362 * 0.02562 * 18 17 16 36 36 H 1.09003 * 109.46918 * 270.25084 * 20 19 18 37 37 H 1.08998 * 109.46640 * 30.24900 * 20 19 18 38 38 H 1.08997 * 109.46793 * 150.25133 * 20 19 18 39 39 H 1.07996 * 119.97324 * 179.72515 * 21 19 18 40 40 H 1.07997 * 120.03034 * 179.97438 * 22 21 19 41 41 H 1.08998 * 109.47532 * 180.02562 * 25 24 23 42 42 H 1.09008 * 109.46980 * 300.00581 * 25 24 23 43 43 H 1.09003 * 109.47002 * 59.99813 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8785 -1.2280 8 7 3.4062 0.3375 -2.1734 9 14 6.0049 0.8802 -1.3812 10 1 6.5988 1.5443 -0.1931 11 1 6.4961 -0.5189 -1.4628 12 1 6.3999 1.6158 -2.6092 13 7 1.6524 2.0974 1.2518 14 6 0.4351 2.6643 1.3670 15 8 -0.3397 2.6319 0.4345 16 6 0.0363 3.3375 2.6549 17 6 -1.3616 3.8850 2.5237 18 6 -1.5563 5.2049 2.1644 19 6 -2.8384 5.7065 2.0391 20 6 -3.0480 7.1450 1.6416 21 6 -3.9290 4.8919 2.2831 22 6 -3.7396 3.5732 2.6476 23 6 -2.4538 3.0660 2.7689 24 8 -2.2649 1.7687 3.1273 25 6 -3.4354 0.9838 3.3637 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 3.8292 -0.0609 -2.9500 32 1 2.2719 2.1231 1.9979 33 1 0.0673 2.6129 3.4685 34 1 0.7277 4.1529 2.8680 35 1 -0.7062 5.8442 1.9772 36 1 -3.0831 7.7676 2.5356 37 1 -2.2249 7.4695 1.0049 38 1 -3.9874 7.2381 1.0968 39 1 -4.9296 5.2872 2.1889 40 1 -4.5916 2.9374 2.8384 41 1 -3.1437 -0.0289 3.6418 42 1 -4.0147 1.4298 4.1722 43 1 -4.0406 0.9522 2.4577 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358054746.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:32 Heat of formation + Delta-G solvation = -85.556253 kcal Electronic energy + Delta-G solvation = -23689.409581 eV Core-core repulsion = 20312.543622 eV Total energy + Delta-G solvation = -3376.865958 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.40445 -40.27059 -38.53434 -36.89996 -34.30451 -34.12157 -32.75536 -32.38581 -29.49894 -28.69923 -28.17055 -26.66255 -24.98524 -23.19068 -22.35956 -21.44328 -20.91634 -19.03331 -18.68378 -17.47142 -17.40581 -17.15117 -16.51009 -16.23062 -16.04572 -15.68528 -15.21634 -14.78658 -14.71043 -14.61873 -14.37419 -14.01898 -13.96859 -13.52932 -13.18223 -13.08625 -12.93813 -12.85646 -12.78689 -12.69774 -12.59634 -12.20307 -12.12868 -12.02263 -11.70390 -11.65347 -11.56454 -11.02070 -10.64243 -10.48791 -9.73814 -9.54836 -8.86722 -8.14578 -6.31982 0.40126 0.53076 1.44414 1.45347 1.57458 1.99338 2.38096 2.45431 2.63834 3.02152 3.14872 3.74038 3.89030 4.03724 4.20461 4.29558 4.37248 4.39217 4.46750 4.49214 4.50266 4.58542 4.63046 4.69394 4.76328 4.81060 4.83106 4.90927 5.08909 5.14543 5.23230 5.27444 5.40990 5.46223 5.50371 5.58364 5.68251 5.71967 5.82003 5.95185 5.97893 6.19426 6.52542 6.77413 7.09442 7.36010 7.70318 8.91026 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.021673 B = 0.004020 C = 0.003642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.640635 B = 6963.137187 C = 7685.882210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.119 4.119 3 C 0.280 3.720 4 H -0.006 1.006 5 C -0.546 4.546 6 H 0.072 0.928 7 C 0.014 3.986 8 N -0.917 5.917 9 Si 0.971 3.029 10 H -0.260 1.260 11 H -0.279 1.279 12 H -0.284 1.284 13 N -0.710 5.710 14 C 0.504 3.496 15 O -0.583 6.583 16 C -0.086 4.086 17 C -0.109 4.109 18 C -0.087 4.087 19 C -0.134 4.134 20 C -0.104 4.104 21 C -0.089 4.089 22 C -0.212 4.212 23 C 0.116 3.884 24 O -0.335 6.335 25 C 0.022 3.978 26 H 0.046 0.954 27 H 0.042 0.958 28 H 0.020 0.980 29 H 0.039 0.961 30 H 0.070 0.930 31 H 0.264 0.736 32 H 0.402 0.598 33 H 0.111 0.889 34 H 0.121 0.879 35 H 0.134 0.866 36 H 0.082 0.918 37 H 0.063 0.937 38 H 0.075 0.925 39 H 0.149 0.851 40 H 0.146 0.854 41 H 0.111 0.889 42 H 0.074 0.926 43 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.874 7.850 13.969 20.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.158 4.158 3 C 0.176 3.824 4 H 0.012 0.988 5 C -0.585 4.585 6 H 0.090 0.910 7 C -0.186 4.186 8 N -0.555 5.555 9 Si 0.796 3.204 10 H -0.184 1.184 11 H -0.205 1.205 12 H -0.210 1.210 13 N -0.359 5.359 14 C 0.291 3.709 15 O -0.463 6.463 16 C -0.125 4.125 17 C -0.110 4.110 18 C -0.105 4.105 19 C -0.134 4.134 20 C -0.161 4.161 21 C -0.107 4.107 22 C -0.230 4.230 23 C 0.071 3.929 24 O -0.249 6.249 25 C -0.073 4.073 26 H 0.065 0.935 27 H 0.061 0.939 28 H 0.039 0.961 29 H 0.058 0.942 30 H 0.088 0.912 31 H 0.073 0.927 32 H 0.237 0.763 33 H 0.129 0.871 34 H 0.139 0.861 35 H 0.152 0.848 36 H 0.101 0.899 37 H 0.082 0.918 38 H 0.093 0.907 39 H 0.167 0.833 40 H 0.164 0.836 41 H 0.129 0.871 42 H 0.092 0.908 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -13.219 7.615 13.160 20.147 hybrid contribution 0.936 -0.438 -0.347 1.090 sum -12.283 7.177 12.813 19.145 Atomic orbital electron populations 1.21637 0.97085 0.98769 1.00177 1.21762 0.93609 0.99372 1.01043 1.18306 0.93534 0.89012 0.81532 0.98797 1.21638 0.91481 1.38715 1.06631 0.91008 1.25789 1.03353 0.94403 0.95017 1.70066 1.37006 1.38534 1.09906 0.85318 0.79103 0.77810 0.78218 1.18363 1.20476 1.21020 1.46260 1.15738 1.56487 1.17450 1.21013 0.81478 0.78376 0.90005 1.90645 1.52295 1.60889 1.42515 1.20494 0.94654 1.01963 0.95407 1.18868 0.92954 0.93878 1.05326 1.20972 0.97978 0.93789 0.97735 1.20130 0.92571 0.98215 1.02512 1.20732 1.02913 0.90531 1.01916 1.21122 0.99578 0.92555 0.97402 1.21438 0.95495 0.98120 1.07986 1.19031 0.94032 0.83777 0.96078 1.86044 1.35687 1.19980 1.83191 1.23261 0.87030 0.95762 1.01224 0.93540 0.93928 0.96078 0.94213 0.91193 0.92680 0.76321 0.87094 0.86070 0.84817 0.89946 0.91832 0.90656 0.83327 0.83620 0.87071 0.90794 0.92848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.70 8.51 71.98 0.61 -5.08 16 2 C -0.12 -6.09 5.45 30.59 0.17 -5.93 16 3 C 0.28 14.80 2.24 44.24 0.10 14.90 16 4 H -0.01 -0.37 7.58 -2.39 -0.02 -0.39 16 5 C -0.55 -29.47 8.73 25.60 0.22 -29.25 16 6 H 0.07 3.62 7.74 -2.91 -0.02 3.60 16 7 C 0.01 0.77 5.29 84.66 0.45 1.22 16 8 N -0.92 -53.46 11.29 21.45 0.24 -53.22 16 9 Si 0.97 42.62 29.54 68.60 2.03 44.64 16 10 H -0.26 -10.76 7.11 99.48 0.71 -10.06 16 11 H -0.28 -11.99 7.11 99.48 0.71 -11.29 16 12 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 13 N -0.71 -30.37 5.02 -446.11 -2.24 -32.61 16 14 C 0.50 20.82 6.39 87.66 0.56 21.38 16 15 O -0.58 -29.14 13.17 -3.04 -0.04 -29.18 16 16 C -0.09 -2.61 5.55 29.10 0.16 -2.44 16 17 C -0.11 -3.41 4.39 -19.77 -0.09 -3.50 16 18 C -0.09 -2.42 9.33 22.25 0.21 -2.21 16 19 C -0.13 -3.23 5.88 -19.85 -0.12 -3.35 16 20 C -0.10 -1.80 10.01 71.24 0.71 -1.09 16 21 C -0.09 -2.01 9.69 22.26 0.22 -1.80 16 22 C -0.21 -5.31 9.04 22.37 0.20 -5.11 16 23 C 0.12 3.53 6.66 22.51 0.15 3.68 16 24 O -0.34 -10.05 9.63 -92.45 -0.89 -10.94 16 25 C 0.02 0.44 9.81 113.37 1.11 1.55 16 26 H 0.05 2.17 5.64 -2.39 -0.01 2.16 16 27 H 0.04 1.78 8.14 -2.39 -0.02 1.77 16 28 H 0.02 1.07 7.85 -2.38 -0.02 1.05 16 29 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 30 H 0.07 3.99 5.95 -2.39 -0.01 3.97 16 31 H 0.26 14.54 8.31 -92.71 -0.77 13.77 16 32 H 0.40 14.55 8.54 -92.71 -0.79 13.76 16 33 H 0.11 3.06 7.69 -2.39 -0.02 3.04 16 34 H 0.12 2.94 8.05 -2.38 -0.02 2.92 16 35 H 0.13 3.33 8.06 -2.91 -0.02 3.30 16 36 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.06 1.12 8.09 -2.39 -0.02 1.10 16 38 H 0.07 1.10 8.08 -2.39 -0.02 1.09 16 39 H 0.15 2.40 8.06 -2.91 -0.02 2.37 16 40 H 0.15 2.84 6.30 -2.91 -0.02 2.82 16 41 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16 42 H 0.07 1.12 7.66 -2.38 -0.02 1.10 16 43 H 0.05 1.06 7.66 -2.39 -0.02 1.05 16 Total: -1.00 -72.04 350.79 3.98 -68.05 By element: Atomic # 1 Polarization: 30.06 SS G_CDS: 0.22 Total: 30.27 kcal Atomic # 6 Polarization: -21.69 SS G_CDS: 4.67 Total: -17.02 kcal Atomic # 7 Polarization: -83.83 SS G_CDS: -2.00 Total: -85.82 kcal Atomic # 8 Polarization: -39.20 SS G_CDS: -0.93 Total: -40.13 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 2.03 Total: 44.64 kcal Total: -72.04 3.98 -68.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358054746.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.504 kcal (2) G-P(sol) polarization free energy of solvation -72.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds