Wall clock time and date at job start Tue Mar 31 2020 06:10:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.47187 * 2 1 4 4 H 1.08994 * 109.47492 * 54.99623 * 3 2 1 5 5 C 1.50703 * 109.47464 * 175.00347 * 3 2 1 6 6 H 1.07996 * 120.00183 * 119.99942 * 5 3 2 7 7 C 1.37877 * 119.99359 * 299.99816 * 5 3 2 8 8 N 1.31512 * 120.00497 * 359.97438 * 7 5 3 9 9 Si 1.86805 * 119.99621 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.47155 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47374 * 119.99811 * 9 7 5 12 12 H 1.48501 * 109.46753 * 239.99990 * 9 7 5 13 13 N 1.46507 * 109.46696 * 295.00111 * 3 2 1 14 14 C 1.34770 * 119.99912 * 85.00047 * 13 3 2 15 15 O 1.21277 * 120.00374 * 359.97438 * 14 13 3 16 16 C 1.50702 * 119.99937 * 179.97438 * 14 13 3 17 17 C 1.50700 * 109.47201 * 179.97438 * 16 14 13 18 18 C 1.38162 * 120.03025 * 265.27617 * 17 16 14 19 19 C 1.38239 * 120.05707 * 180.29546 * 18 17 16 20 20 C 1.50703 * 119.94631 * 179.70222 * 19 18 17 21 21 C 1.38289 * 120.11181 * 359.68360 * 19 18 17 22 22 C 1.38120 * 120.05437 * 0.04570 * 21 19 18 23 23 C 1.38713 * 120.02698 * 85.00388 * 17 16 14 24 24 O 1.35897 * 120.05457 * 359.97438 * 23 17 16 25 25 C 1.42905 * 117.00093 * 179.72802 * 24 23 17 26 26 H 1.08995 * 109.46818 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46789 * 300.00099 * 1 2 3 28 28 H 1.09000 * 109.47346 * 60.00183 * 1 2 3 29 29 H 1.08996 * 109.47555 * 240.00100 * 2 1 3 30 30 H 1.09000 * 109.47346 * 119.99817 * 2 1 3 31 31 H 0.97004 * 120.00204 * 180.02562 * 8 7 5 32 32 H 0.96997 * 119.99938 * 264.99417 * 13 3 2 33 33 H 1.09000 * 109.47061 * 60.00065 * 16 14 13 34 34 H 1.09003 * 109.47120 * 300.00087 * 16 14 13 35 35 H 1.08005 * 119.97290 * 0.02562 * 18 17 16 36 36 H 1.09002 * 109.47165 * 269.97715 * 20 19 18 37 37 H 1.08994 * 109.47007 * 29.98372 * 20 19 18 38 38 H 1.09008 * 109.47169 * 149.97860 * 20 19 18 39 39 H 1.08001 * 119.97258 * 180.02562 * 21 19 18 40 40 H 1.08004 * 120.02942 * 179.97438 * 22 21 19 41 41 H 1.09001 * 109.47103 * 300.00408 * 25 24 23 42 42 H 1.09004 * 109.47054 * 59.99912 * 25 24 23 43 43 H 1.09000 * 109.47187 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8417 5 6 3.5419 1.4444 0.1237 6 1 4.1471 1.8890 -0.6524 7 6 4.1432 0.8785 1.2279 8 7 3.4062 0.3376 2.1733 9 14 6.0049 0.8814 1.3817 10 1 6.5987 1.5464 0.1941 11 1 6.3990 1.6169 2.6101 12 1 6.4970 -0.5173 1.4629 13 7 1.6523 2.0975 -1.2519 14 6 0.4351 2.6643 -1.3670 15 8 -0.3396 2.6319 -0.4345 16 6 0.0365 3.3385 -2.6545 17 6 -1.3614 3.8858 -2.5232 18 6 -2.4398 3.1397 -2.9586 19 6 -3.7219 3.6437 -2.8440 20 6 -4.8957 2.8307 -3.3258 21 6 -3.9292 4.8927 -2.2876 22 6 -2.8550 5.6401 -1.8458 23 6 -1.5671 5.1366 -1.9600 24 8 -0.5086 5.8698 -1.5255 25 6 -0.7948 7.1514 -0.9617 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 3.8293 -0.0602 2.9503 32 1 2.2718 2.1232 -1.9978 33 1 0.0679 2.6144 -3.4686 34 1 0.7279 4.1540 -2.8668 35 1 -2.2805 2.1637 -3.3928 36 1 -5.0937 3.0632 -4.3722 37 1 -4.6679 1.7694 -3.2262 38 1 -5.7745 3.0714 -2.7275 39 1 -4.9319 5.2841 -2.1988 40 1 -3.0174 6.6156 -1.4117 41 1 -1.2954 7.7717 -1.7052 42 1 -1.4431 7.0300 -0.0939 43 1 0.1356 7.6297 -0.6558 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358054747.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:35 Heat of formation + Delta-G solvation = -65.477661 kcal Electronic energy + Delta-G solvation = -23619.345625 eV Core-core repulsion = 20243.350339 eV Total energy + Delta-G solvation = -3375.995285 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.28556 -38.67310 -37.52260 -35.00368 -33.00620 -32.25750 -31.52865 -30.79981 -27.97019 -27.79385 -26.50352 -25.73801 -23.03451 -22.00892 -21.06210 -19.87525 -19.16354 -17.90188 -16.96403 -16.39136 -15.79853 -15.45659 -15.19617 -14.90958 -14.47606 -14.24071 -14.06655 -13.76795 -13.62855 -13.14872 -12.85260 -12.61354 -12.48178 -12.09195 -12.01074 -11.86212 -11.62039 -11.39641 -11.20665 -11.02777 -10.92150 -10.78343 -10.76150 -10.68368 -10.25550 -10.09512 -9.55975 -9.01880 -8.93770 -8.60554 -8.43540 -7.84003 -7.68563 -6.07266 -4.16105 1.44235 1.55307 3.26227 3.34024 3.36871 3.40631 3.60805 3.78150 4.30055 4.53690 4.78943 4.87203 4.95442 5.06489 5.18389 5.23925 5.31285 5.36971 5.43112 5.51595 5.59395 5.70001 5.71516 5.82579 5.85655 5.93720 6.21734 6.40565 6.45432 6.52676 6.53280 6.69980 6.73669 6.91759 7.11086 7.27908 7.45468 7.52442 7.58382 7.69299 7.82484 7.98786 8.25222 8.79992 8.86770 9.30026 9.52307 10.98072 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.021396 B = 0.004060 C = 0.003636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.370414 B = 6894.975965 C = 7698.987599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.127 4.127 3 C 0.271 3.729 4 H 0.047 0.953 5 C -0.531 4.531 6 H 0.061 0.939 7 C 0.065 3.935 8 N -0.883 5.883 9 Si 0.899 3.101 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.712 5.712 14 C 0.507 3.493 15 O -0.542 6.542 16 C -0.100 4.100 17 C -0.080 4.080 18 C -0.070 4.070 19 C -0.127 4.127 20 C -0.106 4.106 21 C -0.086 4.086 22 C -0.207 4.207 23 C 0.139 3.861 24 O -0.310 6.310 25 C 0.030 3.970 26 H 0.020 0.980 27 H 0.048 0.952 28 H 0.039 0.961 29 H 0.030 0.970 30 H 0.097 0.903 31 H 0.263 0.737 32 H 0.387 0.613 33 H 0.093 0.907 34 H 0.098 0.902 35 H 0.125 0.875 36 H 0.064 0.936 37 H 0.064 0.936 38 H 0.062 0.938 39 H 0.119 0.881 40 H 0.124 0.876 41 H 0.051 0.949 42 H 0.054 0.946 43 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.749 9.143 -11.438 18.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.166 4.166 3 C 0.169 3.831 4 H 0.065 0.935 5 C -0.570 4.570 6 H 0.079 0.921 7 C -0.137 4.137 8 N -0.521 5.521 9 Si 0.727 3.273 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.361 5.361 14 C 0.291 3.709 15 O -0.420 6.420 16 C -0.140 4.140 17 C -0.081 4.081 18 C -0.089 4.089 19 C -0.127 4.127 20 C -0.163 4.163 21 C -0.105 4.105 22 C -0.225 4.225 23 C 0.093 3.907 24 O -0.222 6.222 25 C -0.066 4.066 26 H 0.040 0.960 27 H 0.067 0.933 28 H 0.058 0.942 29 H 0.049 0.951 30 H 0.116 0.884 31 H 0.073 0.927 32 H 0.219 0.781 33 H 0.111 0.889 34 H 0.116 0.884 35 H 0.143 0.857 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.081 0.919 39 H 0.137 0.863 40 H 0.142 0.858 41 H 0.069 0.931 42 H 0.073 0.927 43 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -12.063 8.969 -10.552 18.366 hybrid contribution 1.150 0.199 -0.035 1.167 sum -10.913 9.168 -10.587 17.755 Atomic orbital electron populations 1.21825 0.98359 0.97829 1.01287 1.21926 0.92600 0.99944 1.02116 1.18734 0.94019 0.89070 0.81252 0.93491 1.21300 0.90881 1.38618 1.06170 0.92085 1.24888 0.98491 0.94918 0.95440 1.69912 1.34938 1.37873 1.09329 0.86427 0.85071 0.77717 0.78075 1.19755 1.20945 1.20925 1.46459 1.14718 1.56481 1.18407 1.20160 0.82686 0.79155 0.88864 1.90665 1.51428 1.59446 1.40453 1.20572 0.94301 1.01156 0.97951 1.18681 0.95227 0.92232 1.01974 1.20699 0.91003 0.98593 0.98560 1.19708 0.94782 0.95756 1.02493 1.20684 0.95583 0.99337 1.00691 1.20702 0.98041 0.93931 0.97777 1.21109 0.92030 1.01808 1.07592 1.18763 0.86255 0.91338 0.94311 1.86110 1.31346 1.29851 1.74936 1.23016 1.03150 0.82827 0.97570 0.96041 0.93262 0.94203 0.95138 0.88440 0.92714 0.78147 0.88907 0.88378 0.85659 0.91735 0.91685 0.91944 0.86253 0.85765 0.93055 0.92742 0.88357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.12 8.51 37.16 0.32 -2.81 16 2 C -0.13 -3.16 5.45 -26.73 -0.15 -3.31 16 3 C 0.27 6.98 2.24 -69.08 -0.15 6.82 16 4 H 0.05 1.41 7.58 -51.93 -0.39 1.02 16 5 C -0.53 -14.26 8.73 -34.44 -0.30 -14.56 16 6 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 7 C 0.07 1.78 5.29 -17.82 -0.09 1.69 16 8 N -0.88 -25.12 11.29 55.43 0.63 -24.49 16 9 Si 0.90 20.85 29.54 -169.99 -5.02 15.83 16 10 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 11 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 12 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 13 N -0.71 -15.16 5.02 -54.93 -0.28 -15.43 16 14 C 0.51 10.39 6.39 -10.99 -0.07 10.32 16 15 O -0.54 -13.14 13.17 5.56 0.07 -13.07 16 16 C -0.10 -1.56 5.55 -29.03 -0.16 -1.72 16 17 C -0.08 -1.27 4.39 -104.47 -0.46 -1.73 16 18 C -0.07 -1.00 9.33 -39.61 -0.37 -1.37 16 19 C -0.13 -1.63 5.88 -104.60 -0.62 -2.24 16 20 C -0.11 -1.03 10.01 36.01 0.36 -0.67 16 21 C -0.09 -1.07 9.69 -39.61 -0.38 -1.45 16 22 C -0.21 -2.76 9.04 -39.43 -0.36 -3.12 16 23 C 0.14 2.18 6.66 -39.22 -0.26 1.92 16 24 O -0.31 -4.85 9.63 -19.42 -0.19 -5.04 16 25 C 0.03 0.33 9.81 101.05 0.99 1.32 16 26 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.05 1.22 7.85 -51.93 -0.41 0.81 16 28 H 0.04 0.89 5.64 -51.93 -0.29 0.59 16 29 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.10 2.68 5.95 -51.93 -0.31 2.37 16 31 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 32 H 0.39 7.14 8.54 -40.82 -0.35 6.79 16 33 H 0.09 1.19 8.05 -51.93 -0.42 0.77 16 34 H 0.10 1.43 7.69 -51.93 -0.40 1.03 16 35 H 0.13 1.58 8.06 -52.48 -0.42 1.16 16 36 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.06 0.62 8.08 -51.93 -0.42 0.20 16 38 H 0.06 0.54 8.09 -51.92 -0.42 0.12 16 39 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 40 H 0.12 1.35 6.30 -52.48 -0.33 1.02 16 41 H 0.05 0.45 7.66 -51.93 -0.40 0.05 16 42 H 0.05 0.58 7.66 -51.93 -0.40 0.18 16 43 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 350.79 15.07 5.29 5.29 Total: -1.00 -32.44 350.79 -7.81 -40.25 By element: Atomic # 1 Polarization: 14.20 SS G_CDS: -6.61 Total: 7.59 kcal Atomic # 6 Polarization: -9.22 SS G_CDS: -1.70 Total: -10.92 kcal Atomic # 7 Polarization: -40.28 SS G_CDS: 0.35 Total: -39.93 kcal Atomic # 8 Polarization: -17.99 SS G_CDS: -0.11 Total: -18.11 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -32.44 -7.81 -40.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358054747.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.223 kcal (2) G-P(sol) polarization free energy of solvation -32.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds