Wall clock time and date at job start Tue Mar 31 2020 06:10:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.47187 * 2 1 4 4 H 1.08994 * 109.47492 * 54.99623 * 3 2 1 5 5 C 1.50703 * 109.47464 * 175.00347 * 3 2 1 6 6 H 1.07996 * 120.00183 * 119.99942 * 5 3 2 7 7 C 1.37877 * 119.99359 * 299.99816 * 5 3 2 8 8 N 1.31512 * 120.00497 * 359.97438 * 7 5 3 9 9 Si 1.86805 * 119.99621 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.47155 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47374 * 119.99811 * 9 7 5 12 12 H 1.48501 * 109.46753 * 239.99990 * 9 7 5 13 13 N 1.46507 * 109.46696 * 295.00111 * 3 2 1 14 14 C 1.34770 * 119.99912 * 85.00047 * 13 3 2 15 15 O 1.21277 * 120.00374 * 359.97438 * 14 13 3 16 16 C 1.50702 * 119.99937 * 179.97438 * 14 13 3 17 17 C 1.50700 * 109.47201 * 179.97438 * 16 14 13 18 18 C 1.38162 * 120.03025 * 265.27617 * 17 16 14 19 19 C 1.38239 * 120.05707 * 180.29546 * 18 17 16 20 20 C 1.50703 * 119.94631 * 179.70222 * 19 18 17 21 21 C 1.38289 * 120.11181 * 359.68360 * 19 18 17 22 22 C 1.38120 * 120.05437 * 0.04570 * 21 19 18 23 23 C 1.38713 * 120.02698 * 85.00388 * 17 16 14 24 24 O 1.35897 * 120.05457 * 359.97438 * 23 17 16 25 25 C 1.42905 * 117.00093 * 179.72802 * 24 23 17 26 26 H 1.08995 * 109.46818 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46789 * 300.00099 * 1 2 3 28 28 H 1.09000 * 109.47346 * 60.00183 * 1 2 3 29 29 H 1.08996 * 109.47555 * 240.00100 * 2 1 3 30 30 H 1.09000 * 109.47346 * 119.99817 * 2 1 3 31 31 H 0.97004 * 120.00204 * 180.02562 * 8 7 5 32 32 H 0.96997 * 119.99938 * 264.99417 * 13 3 2 33 33 H 1.09000 * 109.47061 * 60.00065 * 16 14 13 34 34 H 1.09003 * 109.47120 * 300.00087 * 16 14 13 35 35 H 1.08005 * 119.97290 * 0.02562 * 18 17 16 36 36 H 1.09002 * 109.47165 * 269.97715 * 20 19 18 37 37 H 1.08994 * 109.47007 * 29.98372 * 20 19 18 38 38 H 1.09008 * 109.47169 * 149.97860 * 20 19 18 39 39 H 1.08001 * 119.97258 * 180.02562 * 21 19 18 40 40 H 1.08004 * 120.02942 * 179.97438 * 22 21 19 41 41 H 1.09001 * 109.47103 * 300.00408 * 25 24 23 42 42 H 1.09004 * 109.47054 * 59.99912 * 25 24 23 43 43 H 1.09000 * 109.47187 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8417 5 6 3.5419 1.4444 0.1237 6 1 4.1471 1.8890 -0.6524 7 6 4.1432 0.8785 1.2279 8 7 3.4062 0.3376 2.1733 9 14 6.0049 0.8814 1.3817 10 1 6.5987 1.5464 0.1941 11 1 6.3990 1.6169 2.6101 12 1 6.4970 -0.5173 1.4629 13 7 1.6523 2.0975 -1.2519 14 6 0.4351 2.6643 -1.3670 15 8 -0.3396 2.6319 -0.4345 16 6 0.0365 3.3385 -2.6545 17 6 -1.3614 3.8858 -2.5232 18 6 -2.4398 3.1397 -2.9586 19 6 -3.7219 3.6437 -2.8440 20 6 -4.8957 2.8307 -3.3258 21 6 -3.9292 4.8927 -2.2876 22 6 -2.8550 5.6401 -1.8458 23 6 -1.5671 5.1366 -1.9600 24 8 -0.5086 5.8698 -1.5255 25 6 -0.7948 7.1514 -0.9617 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 3.8293 -0.0602 2.9503 32 1 2.2718 2.1232 -1.9978 33 1 0.0679 2.6144 -3.4686 34 1 0.7279 4.1540 -2.8668 35 1 -2.2805 2.1637 -3.3928 36 1 -5.0937 3.0632 -4.3722 37 1 -4.6679 1.7694 -3.2262 38 1 -5.7745 3.0714 -2.7275 39 1 -4.9319 5.2841 -2.1988 40 1 -3.0174 6.6156 -1.4117 41 1 -1.2954 7.7717 -1.7052 42 1 -1.4431 7.0300 -0.0939 43 1 0.1356 7.6297 -0.6558 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358054747.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:35 Heat of formation + Delta-G solvation = -85.657865 kcal Electronic energy + Delta-G solvation = -23620.220704 eV Core-core repulsion = 20243.350339 eV Total energy + Delta-G solvation = -3376.870364 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.40872 -40.28115 -38.54328 -36.90015 -34.30542 -34.12215 -32.75085 -32.39462 -29.49406 -28.71063 -28.17611 -26.66715 -24.99088 -23.17372 -22.37429 -21.44278 -20.91654 -19.04343 -18.68858 -17.50127 -17.38595 -17.12711 -16.53088 -16.26926 -16.11442 -15.58609 -15.22651 -14.82759 -14.66925 -14.61944 -14.38892 -14.10709 -13.87426 -13.52807 -13.17940 -13.07939 -12.94983 -12.90020 -12.78521 -12.68967 -12.59853 -12.17090 -12.13333 -12.04212 -11.71001 -11.65793 -11.56716 -11.02169 -10.64320 -10.48836 -9.74083 -9.54647 -8.87362 -8.14884 -6.32229 0.40009 0.52805 1.43799 1.44750 1.56882 1.99194 2.37944 2.44652 2.63648 3.01948 3.14537 3.73920 3.88876 4.03439 4.19757 4.28835 4.36845 4.37398 4.46033 4.49170 4.51140 4.58902 4.62985 4.67892 4.75773 4.81215 4.82998 4.91975 5.08184 5.14847 5.24156 5.27797 5.40885 5.46354 5.50288 5.58386 5.68317 5.71920 5.82548 5.95292 5.98211 6.19747 6.51660 6.77137 7.09397 7.35724 7.70296 8.90622 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.021396 B = 0.004060 C = 0.003636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.370414 B = 6894.975965 C = 7698.987599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.120 4.120 3 C 0.280 3.720 4 H -0.008 1.008 5 C -0.547 4.547 6 H 0.071 0.929 7 C 0.014 3.986 8 N -0.916 5.916 9 Si 0.970 3.030 10 H -0.261 1.261 11 H -0.285 1.285 12 H -0.278 1.278 13 N -0.710 5.710 14 C 0.504 3.496 15 O -0.583 6.583 16 C -0.086 4.086 17 C -0.109 4.109 18 C -0.084 4.084 19 C -0.133 4.133 20 C -0.104 4.104 21 C -0.089 4.089 22 C -0.212 4.212 23 C 0.113 3.887 24 O -0.339 6.339 25 C 0.022 3.978 26 H 0.045 0.955 27 H 0.020 0.980 28 H 0.045 0.955 29 H 0.042 0.958 30 H 0.070 0.930 31 H 0.264 0.736 32 H 0.402 0.598 33 H 0.124 0.876 34 H 0.108 0.892 35 H 0.136 0.864 36 H 0.082 0.918 37 H 0.064 0.936 38 H 0.074 0.926 39 H 0.149 0.851 40 H 0.145 0.855 41 H 0.075 0.925 42 H 0.053 0.947 43 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.162 9.587 -13.295 20.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.159 4.159 3 C 0.176 3.824 4 H 0.010 0.990 5 C -0.585 4.585 6 H 0.089 0.911 7 C -0.185 4.185 8 N -0.555 5.555 9 Si 0.795 3.205 10 H -0.184 1.184 11 H -0.211 1.211 12 H -0.203 1.203 13 N -0.359 5.359 14 C 0.291 3.709 15 O -0.463 6.463 16 C -0.125 4.125 17 C -0.110 4.110 18 C -0.102 4.102 19 C -0.133 4.133 20 C -0.161 4.161 21 C -0.106 4.106 22 C -0.231 4.231 23 C 0.068 3.932 24 O -0.253 6.253 25 C -0.073 4.073 26 H 0.064 0.936 27 H 0.040 0.960 28 H 0.064 0.936 29 H 0.061 0.939 30 H 0.088 0.912 31 H 0.073 0.927 32 H 0.237 0.763 33 H 0.142 0.858 34 H 0.126 0.874 35 H 0.154 0.846 36 H 0.101 0.899 37 H 0.083 0.917 38 H 0.093 0.907 39 H 0.167 0.833 40 H 0.163 0.837 41 H 0.093 0.907 42 H 0.072 0.928 43 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -12.473 9.429 -12.454 19.990 hybrid contribution 1.186 0.121 0.569 1.321 sum -11.287 9.551 -11.885 18.970 Atomic orbital electron populations 1.21649 0.96991 0.98959 1.00181 1.21770 0.93721 0.99194 1.01203 1.18306 0.93491 0.89088 0.81493 0.99020 1.21636 0.91541 1.38670 1.06654 0.91130 1.25782 1.03334 0.94412 0.95014 1.70067 1.36977 1.38551 1.09868 0.85327 0.79143 0.77857 0.78177 1.18438 1.21061 1.20348 1.46258 1.15683 1.56531 1.17457 1.21012 0.81587 0.78173 0.90105 1.90643 1.52505 1.60768 1.42419 1.20497 0.94806 1.01628 0.95595 1.18882 0.95510 0.93026 1.03613 1.20965 0.91425 0.99034 0.98783 1.20133 0.95254 0.96230 1.01732 1.20734 0.94657 0.98790 1.01887 1.21124 0.99176 0.93702 0.96635 1.21432 0.91495 1.02861 1.07312 1.19080 0.87167 0.91829 0.95118 1.86049 1.32277 1.31530 1.75400 1.23260 1.04193 0.81674 0.98129 0.93631 0.96046 0.93560 0.93941 0.91206 0.92675 0.76329 0.85777 0.87394 0.84582 0.89944 0.91688 0.90694 0.83309 0.83714 0.90658 0.92838 0.87192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.62 8.51 71.98 0.61 -5.01 16 2 C -0.12 -6.08 5.45 30.59 0.17 -5.91 16 3 C 0.28 14.82 2.24 44.25 0.10 14.92 16 4 H -0.01 -0.51 7.58 -2.39 -0.02 -0.53 16 5 C -0.55 -29.65 8.73 25.60 0.22 -29.42 16 6 H 0.07 3.60 7.74 -2.91 -0.02 3.58 16 7 C 0.01 0.79 5.29 84.65 0.45 1.24 16 8 N -0.92 -53.48 11.29 21.45 0.24 -53.24 16 9 Si 0.97 42.77 29.54 68.60 2.03 44.80 16 10 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 11 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 12 H -0.28 -11.94 7.11 99.48 0.71 -11.24 16 13 N -0.71 -30.41 5.02 -446.09 -2.24 -32.65 16 14 C 0.50 20.85 6.39 87.66 0.56 21.41 16 15 O -0.58 -29.17 13.17 -3.02 -0.04 -29.21 16 16 C -0.09 -2.61 5.55 29.10 0.16 -2.45 16 17 C -0.11 -3.42 4.39 -19.77 -0.09 -3.50 16 18 C -0.08 -2.30 9.33 22.25 0.21 -2.10 16 19 C -0.13 -3.16 5.88 -19.85 -0.12 -3.27 16 20 C -0.10 -1.74 10.01 71.24 0.71 -1.02 16 21 C -0.09 -2.01 9.69 22.25 0.22 -1.79 16 22 C -0.21 -5.41 9.04 22.36 0.20 -5.21 16 23 C 0.11 3.52 6.66 22.51 0.15 3.67 16 24 O -0.34 -10.65 9.63 -92.39 -0.89 -11.54 16 25 C 0.02 0.47 9.81 113.37 1.11 1.58 16 26 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 27 H 0.02 1.07 7.85 -2.38 -0.02 1.05 16 28 H 0.05 2.07 5.64 -2.39 -0.01 2.06 16 29 H 0.04 2.01 8.14 -2.39 -0.02 1.99 16 30 H 0.07 3.95 5.95 -2.39 -0.01 3.94 16 31 H 0.26 14.55 8.31 -92.71 -0.77 13.78 16 32 H 0.40 14.58 8.54 -92.71 -0.79 13.79 16 33 H 0.12 2.93 8.05 -2.39 -0.02 2.91 16 34 H 0.11 3.06 7.69 -2.39 -0.02 3.04 16 35 H 0.14 3.25 8.06 -2.91 -0.02 3.23 16 36 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.06 1.09 8.08 -2.39 -0.02 1.07 16 38 H 0.07 1.06 8.09 -2.38 -0.02 1.05 16 39 H 0.15 2.39 8.06 -2.91 -0.02 2.37 16 40 H 0.15 2.90 6.30 -2.91 -0.02 2.88 16 41 H 0.07 1.21 7.66 -2.39 -0.02 1.19 16 42 H 0.05 1.12 7.66 -2.38 -0.02 1.11 16 43 H 0.11 2.01 8.14 -2.39 -0.02 1.99 16 Total: -1.00 -72.53 350.79 3.98 -68.55 By element: Atomic # 1 Polarization: 29.96 SS G_CDS: 0.22 Total: 30.17 kcal Atomic # 6 Polarization: -21.54 SS G_CDS: 4.67 Total: -16.87 kcal Atomic # 7 Polarization: -83.90 SS G_CDS: -2.00 Total: -85.89 kcal Atomic # 8 Polarization: -39.82 SS G_CDS: -0.93 Total: -40.75 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 2.03 Total: 44.80 kcal Total: -72.53 3.98 -68.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358054747.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.113 kcal (2) G-P(sol) polarization free energy of solvation -72.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds