Wall clock time and date at job start Tue Mar 31 2020 06:14:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46665 * 2 1 4 4 H 1.09000 * 109.46815 * 54.28334 * 3 2 1 5 5 C 1.50698 * 109.46997 * 174.27857 * 3 2 1 6 6 H 1.07998 * 120.00113 * 114.30626 * 5 3 2 7 7 C 1.37885 * 120.00206 * 294.30516 * 5 3 2 8 8 N 1.31513 * 119.99776 * 153.95278 * 7 5 3 9 9 Si 1.86797 * 120.00069 * 333.95752 * 7 5 3 10 10 H 1.48494 * 109.47271 * 179.97438 * 9 7 5 11 11 H 1.48505 * 109.46948 * 300.00130 * 9 7 5 12 12 H 1.48501 * 109.47041 * 59.99513 * 9 7 5 13 13 N 1.46491 * 109.47275 * 294.27990 * 3 2 1 14 14 C 1.34781 * 119.99991 * 84.99959 * 13 3 2 15 15 O 1.21283 * 120.00070 * 0.02562 * 14 13 3 16 16 C 1.50705 * 119.99955 * 179.97438 * 14 13 3 17 17 O 1.42902 * 109.47131 * 179.97438 * 16 14 13 18 18 C 1.42896 * 114.00086 * 180.02562 * 17 16 14 19 19 C 1.53006 * 109.47020 * 180.02562 * 18 17 16 20 20 C 1.50697 * 109.46742 * 180.02562 * 19 18 17 21 21 C 1.38234 * 120.00013 * 269.72117 * 20 19 18 22 22 C 1.38234 * 120.00006 * 179.76930 * 21 20 19 23 23 C 1.38241 * 119.99914 * 0.50941 * 22 21 20 24 24 C 1.38235 * 119.99886 * 359.74752 * 23 22 21 25 25 C 1.38231 * 120.00107 * 359.97438 * 24 23 22 26 26 H 1.08994 * 109.47343 * 60.00014 * 1 2 3 27 27 H 1.09005 * 109.46581 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47068 * 299.99087 * 1 2 3 29 29 H 1.08993 * 109.47072 * 240.00417 * 2 1 3 30 30 H 1.08994 * 109.47343 * 119.99986 * 2 1 3 31 31 H 0.96993 * 119.99970 * 354.96768 * 8 7 5 32 32 H 0.97000 * 120.00810 * 264.99777 * 13 3 2 33 33 H 1.08999 * 109.47161 * 300.00319 * 16 14 13 34 34 H 1.08996 * 109.46861 * 60.00556 * 16 14 13 35 35 H 1.09001 * 109.47404 * 300.00249 * 18 17 16 36 36 H 1.08994 * 109.47135 * 60.00212 * 18 17 16 37 37 H 1.09001 * 109.46929 * 300.00165 * 19 18 17 38 38 H 1.08996 * 109.46786 * 59.99979 * 19 18 17 39 39 H 1.08006 * 119.99891 * 0.02562 * 21 20 19 40 40 H 1.08000 * 120.00156 * 180.23490 * 22 21 20 41 41 H 1.07998 * 119.99923 * 179.72407 * 23 22 21 42 42 H 1.07992 * 119.99856 * 179.97438 * 24 23 22 43 43 H 1.08000 * 120.00335 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5953 1.9850 0.8344 5 6 3.5402 1.4450 0.1416 6 1 4.1585 1.8023 -0.6685 7 6 4.1236 0.9911 1.3056 8 7 5.3469 0.5087 1.2833 9 14 3.1764 1.0612 2.9141 10 1 4.0190 0.5167 4.0089 11 1 2.8198 2.4705 3.2175 12 1 1.9372 0.2518 2.7945 13 7 1.6672 2.0923 -1.2590 14 6 0.4513 2.6586 -1.3909 15 8 -0.3341 2.6307 -0.4672 16 6 0.0681 3.3275 -2.6859 17 8 -1.2589 3.8468 -2.5793 18 6 -1.7224 4.5043 -3.7603 19 6 -3.1456 5.0179 -3.5330 20 6 -3.6345 5.7107 -4.7787 21 6 -3.4248 7.0672 -4.9427 22 6 -3.8691 7.7018 -6.0876 23 6 -4.5324 6.9820 -7.0638 24 6 -4.7468 5.6266 -6.8974 25 6 -4.2975 4.9908 -5.7551 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5137 0.8900 29 1 1.8933 -0.5137 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 5.8116 0.4042 0.4384 32 1 2.2954 2.1150 -1.9977 33 1 0.7620 4.1421 -2.8933 34 1 0.1091 2.6000 -3.4965 35 1 -1.0660 5.3436 -3.9903 36 1 -1.7182 3.8011 -4.5931 37 1 -3.8022 4.1788 -3.3028 38 1 -3.1494 5.7212 -2.7003 39 1 -2.9102 7.6304 -4.1782 40 1 -3.7019 8.7609 -6.2174 41 1 -4.8834 7.4787 -7.9562 42 1 -5.2653 5.0643 -7.6597 43 1 -4.4653 3.9319 -5.6249 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358062994.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:16 Heat of formation + Delta-G solvation = -72.697247 kcal Electronic energy + Delta-G solvation = -22283.228480 eV Core-core repulsion = 18906.920130 eV Total energy + Delta-G solvation = -3376.308350 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.68112 -39.26429 -37.56081 -35.14397 -33.65796 -32.47356 -31.51737 -31.19782 -29.30939 -27.80466 -26.33037 -23.63931 -22.88037 -22.36175 -21.23201 -20.62914 -19.51047 -17.85874 -17.18160 -16.72632 -16.45561 -16.16269 -15.46848 -15.33739 -15.08933 -14.56620 -14.16294 -13.72384 -13.56025 -13.24453 -13.22363 -13.10048 -12.64156 -12.41603 -12.39809 -12.15973 -11.73940 -11.48189 -11.41852 -11.33789 -11.14225 -10.79467 -10.68497 -10.41921 -9.85265 -9.77863 -9.69307 -9.23046 -9.20596 -9.09606 -8.99931 -8.25474 -8.07991 -6.61711 -4.20653 1.01565 1.08907 3.18552 3.23615 3.42331 3.47233 3.52080 3.63399 4.29045 4.44682 4.53224 4.64020 4.74318 4.84354 4.87747 5.03451 5.07677 5.20962 5.22353 5.22966 5.24464 5.34635 5.39095 5.60256 5.64336 5.78657 5.87774 6.10141 6.12213 6.15334 6.20234 6.30651 6.34676 6.69437 6.71300 6.81537 6.98102 7.03143 7.08528 7.38484 7.44841 7.68115 8.24141 8.48144 8.70927 8.99492 9.43930 10.76148 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.037358 B = 0.002464 C = 0.002434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.321874 B =11359.693934 C =11499.074048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.131 4.131 3 C 0.252 3.748 4 H 0.041 0.959 5 C -0.629 4.629 6 H 0.063 0.937 7 C 0.049 3.951 8 N -0.886 5.886 9 Si 1.029 2.971 10 H -0.283 1.283 11 H -0.280 1.280 12 H -0.273 1.273 13 N -0.702 5.702 14 C 0.501 3.499 15 O -0.530 6.530 16 C 0.044 3.956 17 O -0.361 6.361 18 C 0.067 3.933 19 C -0.080 4.080 20 C -0.079 4.079 21 C -0.115 4.115 22 C -0.119 4.119 23 C -0.125 4.125 24 C -0.120 4.120 25 C -0.115 4.115 26 H 0.048 0.952 27 H 0.030 0.970 28 H 0.051 0.949 29 H 0.049 0.951 30 H 0.063 0.937 31 H 0.271 0.729 32 H 0.392 0.608 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.050 0.950 36 H 0.050 0.950 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.124 0.876 40 H 0.122 0.878 41 H 0.120 0.880 42 H 0.122 0.878 43 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.789 10.179 -16.595 25.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.170 4.170 3 C 0.149 3.851 4 H 0.058 0.942 5 C -0.666 4.666 6 H 0.081 0.919 7 C -0.160 4.160 8 N -0.517 5.517 9 Si 0.856 3.144 10 H -0.209 1.209 11 H -0.206 1.206 12 H -0.199 1.199 13 N -0.352 5.352 14 C 0.285 3.715 15 O -0.407 6.407 16 C -0.036 4.036 17 O -0.279 6.279 18 C -0.010 4.010 19 C -0.117 4.117 20 C -0.079 4.079 21 C -0.133 4.133 22 C -0.138 4.138 23 C -0.143 4.143 24 C -0.138 4.138 25 C -0.133 4.133 26 H 0.067 0.933 27 H 0.049 0.951 28 H 0.070 0.930 29 H 0.068 0.932 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.225 0.775 33 H 0.092 0.908 34 H 0.091 0.909 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.102 0.898 38 H 0.102 0.898 39 H 0.142 0.858 40 H 0.140 0.860 41 H 0.138 0.862 42 H 0.140 0.860 43 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -17.306 9.836 -14.109 24.399 hybrid contribution 0.443 0.371 -2.456 2.523 sum -16.864 10.207 -16.565 25.748 Atomic orbital electron populations 1.21897 0.97351 0.98860 1.02055 1.22233 0.93714 0.99701 1.01376 1.19015 0.95740 0.88450 0.81891 0.94154 1.21975 0.89685 1.50107 1.04870 0.91932 1.25613 0.96602 0.91641 1.02105 1.70874 1.13895 1.36425 1.30536 0.84225 0.76051 0.77700 0.76405 1.20862 1.20635 1.19876 1.46179 1.14186 1.56444 1.18347 1.20057 0.82991 0.79719 0.88738 1.90686 1.50427 1.58654 1.40909 1.22297 0.85489 0.98459 0.97399 1.88000 1.29193 1.74890 1.35860 1.22464 0.94834 0.95944 0.87786 1.20467 0.95256 1.00835 0.95181 1.19783 0.98366 0.93933 0.95851 1.21140 0.99954 0.94203 0.97969 1.21168 0.98520 0.99958 0.94105 1.21172 0.99457 0.94498 0.99203 1.21161 1.00037 0.94888 0.97682 1.21132 0.98378 1.00003 0.93774 0.93257 0.95102 0.92993 0.93183 0.91842 0.91892 0.77512 0.90789 0.90922 0.93178 0.93214 0.89847 0.89812 0.85842 0.86034 0.86185 0.86048 0.85872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.00 8.53 37.16 0.32 -2.68 16 2 C -0.13 -2.96 5.37 -26.73 -0.14 -3.11 16 3 C 0.25 6.04 1.84 -69.09 -0.13 5.91 16 4 H 0.04 1.06 6.12 -51.93 -0.32 0.74 16 5 C -0.63 -16.86 8.92 -34.44 -0.31 -17.16 16 6 H 0.06 1.74 7.96 -52.49 -0.42 1.32 16 7 C 0.05 1.36 5.15 -17.82 -0.09 1.27 16 8 N -0.89 -26.01 13.70 55.43 0.76 -25.25 16 9 Si 1.03 25.07 26.56 -169.99 -4.51 20.56 16 10 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 11 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 12 H -0.27 -6.33 6.34 56.52 0.36 -5.97 16 13 N -0.70 -14.03 5.03 -54.93 -0.28 -14.31 16 14 C 0.50 9.69 6.51 -10.98 -0.07 9.62 16 15 O -0.53 -12.27 13.64 -14.35 -0.20 -12.47 16 16 C 0.04 0.63 6.42 36.01 0.23 0.86 16 17 O -0.36 -5.53 9.88 -55.14 -0.54 -6.08 16 18 C 0.07 0.74 5.92 37.16 0.22 0.96 16 19 C -0.08 -0.81 5.72 -27.88 -0.16 -0.97 16 20 C -0.08 -0.73 5.13 -104.62 -0.54 -1.27 16 21 C -0.11 -0.99 9.70 -39.58 -0.38 -1.38 16 22 C -0.12 -0.93 10.05 -39.58 -0.40 -1.32 16 23 C -0.13 -0.93 10.05 -39.58 -0.40 -1.33 16 24 C -0.12 -0.92 10.05 -39.58 -0.40 -1.32 16 25 C -0.11 -0.99 9.70 -39.58 -0.38 -1.37 16 26 H 0.05 1.02 5.63 -51.93 -0.29 0.73 16 27 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.05 1.13 7.89 -51.93 -0.41 0.72 16 29 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 30 H 0.06 1.50 5.77 -51.93 -0.30 1.20 16 31 H 0.27 7.85 8.73 -40.82 -0.36 7.49 16 32 H 0.39 6.82 8.53 -40.82 -0.35 6.47 16 33 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.08 0.85 8.09 -51.93 -0.42 0.43 16 38 H 0.08 0.86 8.08 -51.93 -0.42 0.44 16 39 H 0.12 0.93 8.06 -52.48 -0.42 0.51 16 40 H 0.12 0.70 8.06 -52.49 -0.42 0.28 16 41 H 0.12 0.64 8.06 -52.49 -0.42 0.22 16 42 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16 43 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 LS Contribution 354.34 15.07 5.34 5.34 Total: -1.00 -32.21 354.34 -8.83 -41.05 By element: Atomic # 1 Polarization: 11.23 SS G_CDS: -6.77 Total: 4.46 kcal Atomic # 6 Polarization: -10.66 SS G_CDS: -2.63 Total: -13.29 kcal Atomic # 7 Polarization: -40.04 SS G_CDS: 0.48 Total: -39.56 kcal Atomic # 8 Polarization: -17.81 SS G_CDS: -0.74 Total: -18.55 kcal Atomic # 14 Polarization: 25.07 SS G_CDS: -4.51 Total: 20.56 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -32.21 -8.83 -41.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358062994.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.652 kcal (2) G-P(sol) polarization free energy of solvation -32.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds