Wall clock time and date at job start Tue Mar 31 2020 06:14:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46665 * 2 1 4 4 H 1.09000 * 109.46815 * 54.28334 * 3 2 1 5 5 C 1.50698 * 109.46997 * 174.27857 * 3 2 1 6 6 H 1.07998 * 120.00113 * 114.30626 * 5 3 2 7 7 C 1.37885 * 120.00206 * 294.30516 * 5 3 2 8 8 N 1.31513 * 119.99776 * 153.95278 * 7 5 3 9 9 Si 1.86797 * 120.00069 * 333.95752 * 7 5 3 10 10 H 1.48494 * 109.47271 * 179.97438 * 9 7 5 11 11 H 1.48505 * 109.46948 * 300.00130 * 9 7 5 12 12 H 1.48501 * 109.47041 * 59.99513 * 9 7 5 13 13 N 1.46491 * 109.47275 * 294.27990 * 3 2 1 14 14 C 1.34781 * 119.99991 * 84.99959 * 13 3 2 15 15 O 1.21283 * 120.00070 * 0.02562 * 14 13 3 16 16 C 1.50705 * 119.99955 * 179.97438 * 14 13 3 17 17 O 1.42902 * 109.47131 * 179.97438 * 16 14 13 18 18 C 1.42896 * 114.00086 * 180.02562 * 17 16 14 19 19 C 1.53006 * 109.47020 * 180.02562 * 18 17 16 20 20 C 1.50697 * 109.46742 * 180.02562 * 19 18 17 21 21 C 1.38234 * 120.00013 * 269.72117 * 20 19 18 22 22 C 1.38234 * 120.00006 * 179.76930 * 21 20 19 23 23 C 1.38241 * 119.99914 * 0.50941 * 22 21 20 24 24 C 1.38235 * 119.99886 * 359.74752 * 23 22 21 25 25 C 1.38231 * 120.00107 * 359.97438 * 24 23 22 26 26 H 1.08994 * 109.47343 * 60.00014 * 1 2 3 27 27 H 1.09005 * 109.46581 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47068 * 299.99087 * 1 2 3 29 29 H 1.08993 * 109.47072 * 240.00417 * 2 1 3 30 30 H 1.08994 * 109.47343 * 119.99986 * 2 1 3 31 31 H 0.96993 * 119.99970 * 354.96768 * 8 7 5 32 32 H 0.97000 * 120.00810 * 264.99777 * 13 3 2 33 33 H 1.08999 * 109.47161 * 300.00319 * 16 14 13 34 34 H 1.08996 * 109.46861 * 60.00556 * 16 14 13 35 35 H 1.09001 * 109.47404 * 300.00249 * 18 17 16 36 36 H 1.08994 * 109.47135 * 60.00212 * 18 17 16 37 37 H 1.09001 * 109.46929 * 300.00165 * 19 18 17 38 38 H 1.08996 * 109.46786 * 59.99979 * 19 18 17 39 39 H 1.08006 * 119.99891 * 0.02562 * 21 20 19 40 40 H 1.08000 * 120.00156 * 180.23490 * 22 21 20 41 41 H 1.07998 * 119.99923 * 179.72407 * 23 22 21 42 42 H 1.07992 * 119.99856 * 179.97438 * 24 23 22 43 43 H 1.08000 * 120.00335 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5953 1.9850 0.8344 5 6 3.5402 1.4450 0.1416 6 1 4.1585 1.8023 -0.6685 7 6 4.1236 0.9911 1.3056 8 7 5.3469 0.5087 1.2833 9 14 3.1764 1.0612 2.9141 10 1 4.0190 0.5167 4.0089 11 1 2.8198 2.4705 3.2175 12 1 1.9372 0.2518 2.7945 13 7 1.6672 2.0923 -1.2590 14 6 0.4513 2.6586 -1.3909 15 8 -0.3341 2.6307 -0.4672 16 6 0.0681 3.3275 -2.6859 17 8 -1.2589 3.8468 -2.5793 18 6 -1.7224 4.5043 -3.7603 19 6 -3.1456 5.0179 -3.5330 20 6 -3.6345 5.7107 -4.7787 21 6 -3.4248 7.0672 -4.9427 22 6 -3.8691 7.7018 -6.0876 23 6 -4.5324 6.9820 -7.0638 24 6 -4.7468 5.6266 -6.8974 25 6 -4.2975 4.9908 -5.7551 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5137 0.8900 29 1 1.8933 -0.5137 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 5.8116 0.4042 0.4384 32 1 2.2954 2.1150 -1.9977 33 1 0.7620 4.1421 -2.8933 34 1 0.1091 2.6000 -3.4965 35 1 -1.0660 5.3436 -3.9903 36 1 -1.7182 3.8011 -4.5931 37 1 -3.8022 4.1788 -3.3028 38 1 -3.1494 5.7212 -2.7003 39 1 -2.9102 7.6304 -4.1782 40 1 -3.7019 8.7609 -6.2174 41 1 -4.8834 7.4787 -7.9562 42 1 -5.2653 5.0643 -7.6597 43 1 -4.4653 3.9319 -5.6249 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358062994.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:16 Heat of formation + Delta-G solvation = -92.086676 kcal Electronic energy + Delta-G solvation = -22284.069269 eV Core-core repulsion = 18906.920130 eV Total energy + Delta-G solvation = -3377.149139 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.86894 -40.22341 -38.69259 -36.92980 -34.49007 -34.41147 -33.23664 -31.76957 -30.29841 -29.27849 -27.76538 -24.46293 -24.24501 -23.45830 -22.38935 -21.81800 -21.22742 -19.83072 -18.08723 -17.89915 -17.51042 -17.34311 -16.86499 -16.33620 -15.85871 -15.81583 -15.55625 -15.24855 -14.56505 -14.48698 -14.38491 -14.24267 -14.14659 -13.84594 -13.71671 -13.40618 -13.36682 -12.66077 -12.50383 -12.39129 -12.30622 -12.27762 -11.94643 -11.80861 -11.77194 -11.57842 -11.22924 -10.69305 -10.66760 -10.40710 -9.81917 -9.80621 -9.64351 -8.81134 -6.40134 0.40794 0.50214 1.47074 1.48946 1.69889 1.74359 2.01480 2.42407 2.84113 2.92981 3.14030 3.86655 3.88604 3.97459 4.17150 4.17787 4.18775 4.29243 4.30931 4.31950 4.32541 4.40534 4.45006 4.55468 4.62012 4.65041 4.85898 4.92687 4.95590 5.08908 5.18046 5.18762 5.21586 5.29799 5.54718 5.57775 5.63443 5.66734 5.70463 5.71573 6.03332 6.09988 6.12381 6.55655 6.86715 7.27254 7.46128 8.55852 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.037358 B = 0.002464 C = 0.002434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.321874 B =11359.693934 C =11499.074048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.128 4.128 3 C 0.255 3.745 4 H 0.018 0.982 5 C -0.625 4.625 6 H 0.045 0.955 7 C 0.008 3.992 8 N -0.915 5.915 9 Si 1.061 2.939 10 H -0.280 1.280 11 H -0.275 1.275 12 H -0.257 1.257 13 N -0.701 5.701 14 C 0.497 3.503 15 O -0.571 6.571 16 C 0.053 3.947 17 O -0.393 6.393 18 C 0.066 3.934 19 C -0.076 4.076 20 C -0.091 4.091 21 C -0.128 4.128 22 C -0.127 4.127 23 C -0.130 4.130 24 C -0.126 4.126 25 C -0.127 4.127 26 H 0.048 0.952 27 H 0.056 0.944 28 H 0.036 0.964 29 H 0.056 0.944 30 H 0.050 0.950 31 H 0.263 0.737 32 H 0.405 0.595 33 H 0.101 0.899 34 H 0.105 0.895 35 H 0.061 0.939 36 H 0.064 0.936 37 H 0.077 0.923 38 H 0.075 0.925 39 H 0.129 0.871 40 H 0.140 0.860 41 H 0.142 0.858 42 H 0.140 0.860 43 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.254 10.705 -18.342 28.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.167 4.167 3 C 0.151 3.849 4 H 0.036 0.964 5 C -0.663 4.663 6 H 0.063 0.937 7 C -0.196 4.196 8 N -0.548 5.548 9 Si 0.884 3.116 10 H -0.206 1.206 11 H -0.201 1.201 12 H -0.181 1.181 13 N -0.351 5.351 14 C 0.284 3.716 15 O -0.451 6.451 16 C -0.027 4.027 17 O -0.312 6.312 18 C -0.010 4.010 19 C -0.113 4.113 20 C -0.092 4.092 21 C -0.146 4.146 22 C -0.144 4.144 23 C -0.148 4.148 24 C -0.144 4.144 25 C -0.145 4.145 26 H 0.067 0.933 27 H 0.075 0.925 28 H 0.055 0.945 29 H 0.075 0.925 30 H 0.069 0.931 31 H 0.072 0.928 32 H 0.240 0.760 33 H 0.119 0.881 34 H 0.123 0.877 35 H 0.080 0.920 36 H 0.082 0.918 37 H 0.096 0.904 38 H 0.094 0.906 39 H 0.146 0.854 40 H 0.157 0.843 41 H 0.159 0.841 42 H 0.158 0.842 43 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -18.772 10.374 -15.902 26.700 hybrid contribution 0.875 0.278 -2.018 2.217 sum -17.897 10.653 -17.920 27.476 Atomic orbital electron populations 1.21764 0.95714 1.00274 1.01278 1.22123 0.95060 0.98406 1.01078 1.18716 0.93575 0.89484 0.83175 0.96387 1.22138 0.91299 1.48768 1.04068 0.93669 1.26611 0.96737 0.91340 1.04886 1.70960 1.14980 1.38755 1.30087 0.83789 0.75813 0.78239 0.73782 1.20552 1.20102 1.18142 1.45988 1.15195 1.56495 1.17461 1.20907 0.81848 0.78763 0.90111 1.90665 1.51476 1.60079 1.42884 1.22242 0.85937 0.99740 0.94751 1.87957 1.29508 1.75532 1.38183 1.22634 0.95247 0.96366 0.86749 1.20399 0.94850 1.00485 0.95558 1.19757 0.99337 0.94308 0.95751 1.21314 1.00403 0.94188 0.98677 1.21452 0.98188 1.01006 0.93790 1.21510 0.98849 0.94571 0.99830 1.21453 0.99817 0.95330 0.97786 1.21315 0.98543 1.00539 0.94075 0.93281 0.92509 0.94529 0.92504 0.93120 0.92817 0.75964 0.88142 0.87690 0.92048 0.91792 0.90426 0.90595 0.85352 0.84253 0.84055 0.84170 0.85197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.32 8.53 71.98 0.61 -4.71 16 2 C -0.13 -5.63 5.37 30.60 0.16 -5.47 16 3 C 0.26 12.10 1.84 44.25 0.08 12.18 16 4 H 0.02 0.96 6.12 -2.39 -0.01 0.94 16 5 C -0.63 -33.63 8.92 25.60 0.23 -33.40 16 6 H 0.05 2.54 7.96 -2.91 -0.02 2.52 16 7 C 0.01 0.42 5.15 84.66 0.44 0.86 16 8 N -0.91 -54.35 13.70 21.45 0.29 -54.06 16 9 Si 1.06 50.62 26.56 68.60 1.82 52.44 16 10 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 11 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 12 H -0.26 -11.49 6.34 99.48 0.63 -10.86 16 13 N -0.70 -27.22 5.03 -446.10 -2.24 -29.46 16 14 C 0.50 18.55 6.51 87.66 0.57 19.12 16 15 O -0.57 -26.21 13.64 16.00 0.22 -25.99 16 16 C 0.05 1.38 6.42 71.24 0.46 1.83 16 17 O -0.39 -11.36 9.88 -129.94 -1.28 -12.64 16 18 C 0.07 1.34 5.92 71.98 0.43 1.77 16 19 C -0.08 -1.46 5.72 29.85 0.17 -1.29 16 20 C -0.09 -1.59 5.13 -19.87 -0.10 -1.69 16 21 C -0.13 -2.05 9.70 22.27 0.22 -1.84 16 22 C -0.13 -1.72 10.05 22.27 0.22 -1.50 16 23 C -0.13 -1.63 10.05 22.27 0.22 -1.41 16 24 C -0.13 -1.68 10.05 22.27 0.22 -1.46 16 25 C -0.13 -1.99 9.70 22.27 0.22 -1.78 16 26 H 0.05 1.95 5.63 -2.39 -0.01 1.94 16 27 H 0.06 1.95 8.14 -2.38 -0.02 1.93 16 28 H 0.04 1.55 7.89 -2.39 -0.02 1.53 16 29 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 30 H 0.05 2.34 5.77 -2.39 -0.01 2.33 16 31 H 0.26 15.53 8.73 -92.71 -0.81 14.72 16 32 H 0.41 13.50 8.53 -92.71 -0.79 12.71 16 33 H 0.10 2.12 8.14 -2.39 -0.02 2.10 16 34 H 0.11 2.09 8.14 -2.39 -0.02 2.07 16 35 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 36 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.08 1.55 8.09 -2.39 -0.02 1.53 16 38 H 0.08 1.54 8.08 -2.39 -0.02 1.53 16 39 H 0.13 1.82 8.06 -2.91 -0.02 1.79 16 40 H 0.14 1.30 8.06 -2.91 -0.02 1.28 16 41 H 0.14 1.10 8.06 -2.91 -0.02 1.08 16 42 H 0.14 1.25 8.06 -2.91 -0.02 1.23 16 43 H 0.13 1.75 8.06 -2.91 -0.02 1.73 16 Total: -1.00 -69.47 354.34 3.05 -66.42 By element: Atomic # 1 Polarization: 21.99 SS G_CDS: 0.09 Total: 22.08 kcal Atomic # 6 Polarization: -22.94 SS G_CDS: 4.15 Total: -18.79 kcal Atomic # 7 Polarization: -81.57 SS G_CDS: -1.95 Total: -83.52 kcal Atomic # 8 Polarization: -37.57 SS G_CDS: -1.07 Total: -38.64 kcal Atomic # 14 Polarization: 50.62 SS G_CDS: 1.82 Total: 52.44 kcal Total: -69.47 3.05 -66.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358062994.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.667 kcal (2) G-P(sol) polarization free energy of solvation -69.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds