Wall clock time and date at job start Tue Mar 31 2020 06:14:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47391 * 2 1 4 4 H 1.08999 * 109.46983 * 305.00292 * 3 2 1 5 5 C 1.50700 * 109.47433 * 185.00059 * 3 2 1 6 6 H 1.07995 * 120.00109 * 240.00043 * 5 3 2 7 7 C 1.37873 * 119.99681 * 60.00380 * 5 3 2 8 8 N 1.31521 * 120.00364 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 119.99840 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47130 * 359.97438 * 9 7 5 11 11 H 1.48506 * 109.47127 * 119.99459 * 9 7 5 12 12 H 1.48498 * 109.47285 * 239.99667 * 9 7 5 13 13 N 1.46506 * 109.46691 * 65.00031 * 3 2 1 14 14 C 1.34773 * 119.99969 * 274.72265 * 13 3 2 15 15 O 1.21281 * 120.00220 * 0.02562 * 14 13 3 16 16 C 1.50706 * 120.00080 * 180.02562 * 14 13 3 17 17 O 1.42898 * 109.47060 * 180.02562 * 16 14 13 18 18 C 1.42904 * 113.99522 * 179.97438 * 17 16 14 19 19 C 1.53004 * 109.46978 * 180.02562 * 18 17 16 20 20 C 1.50698 * 109.46961 * 180.02562 * 19 18 17 21 21 C 1.38234 * 119.99635 * 269.72493 * 20 19 18 22 22 C 1.38241 * 119.99303 * 179.77007 * 21 20 19 23 23 C 1.38228 * 120.00389 * 0.50525 * 22 21 20 24 24 C 1.38240 * 119.99803 * 359.74994 * 23 22 21 25 25 C 1.38229 * 120.00111 * 359.97438 * 24 23 22 26 26 H 1.09005 * 109.46969 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.46886 * 299.99799 * 1 2 3 28 28 H 1.08997 * 109.46969 * 59.99876 * 1 2 3 29 29 H 1.09007 * 109.46841 * 240.00223 * 2 1 3 30 30 H 1.09000 * 109.47546 * 120.00589 * 2 1 3 31 31 H 0.96994 * 119.99652 * 180.02562 * 8 7 5 32 32 H 0.97005 * 119.99811 * 95.00317 * 13 3 2 33 33 H 1.09004 * 109.46762 * 300.00389 * 16 14 13 34 34 H 1.08998 * 109.46924 * 59.99727 * 16 14 13 35 35 H 1.08994 * 109.47141 * 299.99874 * 18 17 16 36 36 H 1.08998 * 109.46913 * 60.00229 * 18 17 16 37 37 H 1.09006 * 109.46584 * 300.00018 * 19 18 17 38 38 H 1.09002 * 109.47042 * 59.99800 * 19 18 17 39 39 H 1.07993 * 120.00562 * 0.02562 * 21 20 19 40 40 H 1.08003 * 119.99412 * 180.22921 * 22 21 20 41 41 H 1.08001 * 120.00245 * 179.72283 * 23 22 21 42 42 H 1.08002 * 119.99553 * 179.97438 * 24 23 22 43 43 H 1.07996 * 120.00143 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5420 1.4443 -0.1238 6 1 4.1473 1.8888 0.6522 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3367 -2.1730 9 14 6.0050 0.8800 -1.3812 10 1 6.5988 1.5451 -0.1937 11 1 6.4962 -0.5191 -1.4628 12 1 6.4000 1.6157 -2.6092 13 7 1.6525 2.0974 1.2519 14 6 0.4373 2.6692 1.3651 15 8 -0.3355 2.6412 0.4309 16 6 0.0388 3.3434 2.6527 17 8 -1.2843 3.8680 2.5260 18 6 -1.7614 4.5308 3.6987 19 6 -3.1796 5.0487 3.4504 20 6 -3.6825 5.7482 4.6868 21 6 -4.3663 5.0358 5.6542 22 6 -4.8234 5.6767 6.7906 23 6 -4.6059 7.0318 6.9547 24 6 -3.9267 7.7453 5.9848 25 6 -3.4646 7.1034 4.8511 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 3.8293 -0.0617 -2.9496 32 1 2.2720 2.1230 1.9979 33 1 0.0655 2.6181 3.4660 34 1 0.7332 4.1557 2.8675 35 1 -1.7719 3.8300 4.5333 36 1 -1.1048 5.3680 3.9353 37 1 -3.1695 5.7494 2.6155 38 1 -3.8360 4.2112 3.2140 39 1 -4.5398 3.9779 5.5241 40 1 -5.3545 5.1193 7.5481 41 1 -4.9670 7.5334 7.8404 42 1 -3.7571 8.8042 6.1129 43 1 -2.9343 7.6608 4.0932 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358063011.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:20 Heat of formation + Delta-G solvation = -72.264536 kcal Electronic energy + Delta-G solvation = -22209.388226 eV Core-core repulsion = 18833.098640 eV Total energy + Delta-G solvation = -3376.289586 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.63207 -39.10132 -37.44495 -34.96318 -33.60320 -32.37983 -31.16383 -31.02904 -29.22587 -27.64451 -26.19138 -23.60110 -22.92925 -22.84567 -21.17377 -20.37588 -19.31396 -17.29738 -17.05937 -16.58236 -16.37005 -15.62889 -15.36265 -15.28858 -15.02230 -14.43328 -14.35001 -13.77660 -13.67252 -13.19738 -13.13979 -12.93680 -12.66459 -12.40691 -11.94688 -11.59947 -11.38803 -11.35469 -11.29570 -11.23877 -11.08428 -10.95401 -10.82640 -10.29763 -10.16701 -9.64161 -9.58955 -9.19630 -9.04794 -9.00575 -8.87575 -8.49366 -7.81052 -6.12107 -4.21575 1.05169 1.12260 3.23453 3.26574 3.32050 3.34661 3.40772 3.57778 4.28279 4.46055 4.57092 4.68561 4.78803 4.88190 4.92829 5.11515 5.19187 5.24659 5.26652 5.29734 5.31023 5.44350 5.54181 5.64847 5.68782 5.82804 5.93045 6.18738 6.23414 6.38749 6.41889 6.48797 6.68789 6.72906 7.05732 7.10537 7.24919 7.39163 7.46614 7.63530 7.75375 7.91510 8.19015 8.67177 8.79165 9.15759 9.45917 10.93260 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.035879 B = 0.002380 C = 0.002300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.222666 B =11759.535773 C =12173.211445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.128 4.128 3 C 0.271 3.729 4 H 0.050 0.950 5 C -0.533 4.533 6 H 0.062 0.938 7 C 0.066 3.934 8 N -0.881 5.881 9 Si 0.901 3.099 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.709 5.709 14 C 0.501 3.499 15 O -0.528 6.528 16 C 0.043 3.957 17 O -0.361 6.361 18 C 0.067 3.933 19 C -0.081 4.081 20 C -0.078 4.078 21 C -0.115 4.115 22 C -0.120 4.120 23 C -0.126 4.126 24 C -0.120 4.120 25 C -0.115 4.115 26 H 0.023 0.977 27 H 0.038 0.962 28 H 0.050 0.950 29 H 0.099 0.901 30 H 0.031 0.969 31 H 0.264 0.736 32 H 0.388 0.612 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.049 0.951 36 H 0.049 0.951 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.123 0.877 40 H 0.121 0.879 41 H 0.120 0.880 42 H 0.121 0.879 43 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.076 10.328 17.667 23.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.166 4.166 3 C 0.170 3.830 4 H 0.067 0.933 5 C -0.572 4.572 6 H 0.080 0.920 7 C -0.138 4.138 8 N -0.519 5.519 9 Si 0.729 3.271 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.359 5.359 14 C 0.284 3.716 15 O -0.405 6.405 16 C -0.037 4.037 17 O -0.279 6.279 18 C -0.010 4.010 19 C -0.118 4.118 20 C -0.079 4.079 21 C -0.133 4.133 22 C -0.138 4.138 23 C -0.144 4.144 24 C -0.138 4.138 25 C -0.133 4.133 26 H 0.042 0.958 27 H 0.057 0.943 28 H 0.069 0.931 29 H 0.117 0.883 30 H 0.050 0.950 31 H 0.074 0.926 32 H 0.220 0.780 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.067 0.933 36 H 0.068 0.932 37 H 0.102 0.898 38 H 0.102 0.898 39 H 0.141 0.859 40 H 0.139 0.861 41 H 0.138 0.862 42 H 0.139 0.861 43 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -12.728 10.182 16.607 23.269 hybrid contribution 1.481 0.009 0.616 1.604 sum -11.246 10.190 17.223 22.956 Atomic orbital electron populations 1.21838 0.98292 0.98055 1.01301 1.21940 0.92648 0.99780 1.02277 1.18800 0.94194 0.89167 0.80853 0.93257 1.21264 0.90675 1.38955 1.06282 0.92022 1.24897 0.98621 0.94842 0.95401 1.69909 1.35027 1.37609 1.09351 0.86398 0.84856 0.77752 0.78099 1.19772 1.20886 1.20895 1.46413 1.14436 1.56265 1.18749 1.19977 0.83109 0.79870 0.88623 1.90694 1.51136 1.58721 1.39941 1.22332 0.85411 0.98287 0.97689 1.88010 1.29588 1.74495 1.35815 1.22452 0.94678 0.95848 0.88042 1.20473 0.95308 1.00770 0.95234 1.19792 0.98179 0.93959 0.95932 1.21136 0.98279 1.00030 0.93836 1.21161 1.00065 0.94860 0.97691 1.21165 0.99478 0.94527 0.99208 1.21162 0.98439 0.99929 0.94238 1.21137 0.99938 0.94180 0.98018 0.95830 0.94300 0.93126 0.88260 0.95034 0.92604 0.78009 0.91058 0.90964 0.93271 0.93237 0.89819 0.89827 0.85858 0.86068 0.86214 0.86061 0.85844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.14 8.52 37.16 0.32 -2.82 16 2 C -0.13 -3.12 5.45 -26.73 -0.15 -3.27 16 3 C 0.27 6.83 2.24 -69.08 -0.15 6.68 16 4 H 0.05 1.45 7.57 -51.93 -0.39 1.06 16 5 C -0.53 -13.99 8.73 -34.44 -0.30 -14.29 16 6 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 7 C 0.07 1.75 5.29 -17.82 -0.09 1.66 16 8 N -0.88 -24.69 11.29 55.43 0.63 -24.07 16 9 Si 0.90 20.51 29.54 -169.99 -5.02 15.49 16 10 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 11 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 12 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 13 N -0.71 -14.58 5.02 -54.93 -0.28 -14.85 16 14 C 0.50 10.12 6.48 -10.98 -0.07 10.04 16 15 O -0.53 -12.94 13.67 -14.35 -0.20 -13.13 16 16 C 0.04 0.64 6.42 36.01 0.23 0.87 16 17 O -0.36 -5.76 9.88 -55.14 -0.54 -6.31 16 18 C 0.07 0.77 5.92 37.16 0.22 0.99 16 19 C -0.08 -0.84 5.72 -27.88 -0.16 -1.00 16 20 C -0.08 -0.75 5.13 -104.62 -0.54 -1.29 16 21 C -0.11 -1.02 9.70 -39.58 -0.38 -1.40 16 22 C -0.12 -0.95 10.05 -39.58 -0.40 -1.35 16 23 C -0.13 -0.96 10.05 -39.58 -0.40 -1.36 16 24 C -0.12 -0.95 10.05 -39.58 -0.40 -1.35 16 25 C -0.11 -1.02 9.70 -39.59 -0.38 -1.41 16 26 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.04 0.87 5.67 -51.93 -0.29 0.57 16 28 H 0.05 1.23 7.85 -51.93 -0.41 0.83 16 29 H 0.10 2.68 5.95 -51.93 -0.31 2.37 16 30 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 32 H 0.39 6.76 8.54 -40.82 -0.35 6.41 16 33 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 35 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 37 H 0.08 0.89 8.09 -51.93 -0.42 0.47 16 38 H 0.08 0.89 8.08 -51.93 -0.42 0.47 16 39 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 40 H 0.12 0.72 8.06 -52.48 -0.42 0.29 16 41 H 0.12 0.66 8.06 -52.49 -0.42 0.24 16 42 H 0.12 0.72 8.06 -52.49 -0.42 0.30 16 43 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 LS Contribution 357.09 15.07 5.38 5.38 Total: -1.00 -31.68 357.09 -9.47 -41.15 By element: Atomic # 1 Polarization: 12.40 SS G_CDS: -6.78 Total: 5.61 kcal Atomic # 6 Polarization: -6.63 SS G_CDS: -2.66 Total: -9.28 kcal Atomic # 7 Polarization: -39.27 SS G_CDS: 0.35 Total: -38.92 kcal Atomic # 8 Polarization: -18.70 SS G_CDS: -0.74 Total: -19.44 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -31.68 -9.47 -41.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358063011.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.111 kcal (2) G-P(sol) polarization free energy of solvation -31.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds