Wall clock time and date at job start Tue Mar 31 2020 06:14:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47391 * 2 1 4 4 H 1.08999 * 109.46983 * 305.00292 * 3 2 1 5 5 C 1.50700 * 109.47433 * 185.00059 * 3 2 1 6 6 H 1.07995 * 120.00109 * 240.00043 * 5 3 2 7 7 C 1.37873 * 119.99681 * 60.00380 * 5 3 2 8 8 N 1.31521 * 120.00364 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 119.99840 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47130 * 359.97438 * 9 7 5 11 11 H 1.48506 * 109.47127 * 119.99459 * 9 7 5 12 12 H 1.48498 * 109.47285 * 239.99667 * 9 7 5 13 13 N 1.46506 * 109.46691 * 65.00031 * 3 2 1 14 14 C 1.34773 * 119.99969 * 274.72265 * 13 3 2 15 15 O 1.21281 * 120.00220 * 0.02562 * 14 13 3 16 16 C 1.50706 * 120.00080 * 180.02562 * 14 13 3 17 17 O 1.42898 * 109.47060 * 180.02562 * 16 14 13 18 18 C 1.42904 * 113.99522 * 179.97438 * 17 16 14 19 19 C 1.53004 * 109.46978 * 180.02562 * 18 17 16 20 20 C 1.50698 * 109.46961 * 180.02562 * 19 18 17 21 21 C 1.38234 * 119.99635 * 269.72493 * 20 19 18 22 22 C 1.38241 * 119.99303 * 179.77007 * 21 20 19 23 23 C 1.38228 * 120.00389 * 0.50525 * 22 21 20 24 24 C 1.38240 * 119.99803 * 359.74994 * 23 22 21 25 25 C 1.38229 * 120.00111 * 359.97438 * 24 23 22 26 26 H 1.09005 * 109.46969 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.46886 * 299.99799 * 1 2 3 28 28 H 1.08997 * 109.46969 * 59.99876 * 1 2 3 29 29 H 1.09007 * 109.46841 * 240.00223 * 2 1 3 30 30 H 1.09000 * 109.47546 * 120.00589 * 2 1 3 31 31 H 0.96994 * 119.99652 * 180.02562 * 8 7 5 32 32 H 0.97005 * 119.99811 * 95.00317 * 13 3 2 33 33 H 1.09004 * 109.46762 * 300.00389 * 16 14 13 34 34 H 1.08998 * 109.46924 * 59.99727 * 16 14 13 35 35 H 1.08994 * 109.47141 * 299.99874 * 18 17 16 36 36 H 1.08998 * 109.46913 * 60.00229 * 18 17 16 37 37 H 1.09006 * 109.46584 * 300.00018 * 19 18 17 38 38 H 1.09002 * 109.47042 * 59.99800 * 19 18 17 39 39 H 1.07993 * 120.00562 * 0.02562 * 21 20 19 40 40 H 1.08003 * 119.99412 * 180.22921 * 22 21 20 41 41 H 1.08001 * 120.00245 * 179.72283 * 23 22 21 42 42 H 1.08002 * 119.99553 * 179.97438 * 24 23 22 43 43 H 1.07996 * 120.00143 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5420 1.4443 -0.1238 6 1 4.1473 1.8888 0.6522 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3367 -2.1730 9 14 6.0050 0.8800 -1.3812 10 1 6.5988 1.5451 -0.1937 11 1 6.4962 -0.5191 -1.4628 12 1 6.4000 1.6157 -2.6092 13 7 1.6525 2.0974 1.2519 14 6 0.4373 2.6692 1.3651 15 8 -0.3355 2.6412 0.4309 16 6 0.0388 3.3434 2.6527 17 8 -1.2843 3.8680 2.5260 18 6 -1.7614 4.5308 3.6987 19 6 -3.1796 5.0487 3.4504 20 6 -3.6825 5.7482 4.6868 21 6 -4.3663 5.0358 5.6542 22 6 -4.8234 5.6767 6.7906 23 6 -4.6059 7.0318 6.9547 24 6 -3.9267 7.7453 5.9848 25 6 -3.4646 7.1034 4.8511 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 3.8293 -0.0617 -2.9496 32 1 2.2720 2.1230 1.9979 33 1 0.0655 2.6181 3.4660 34 1 0.7332 4.1557 2.8675 35 1 -1.7719 3.8300 4.5333 36 1 -1.1048 5.3680 3.9353 37 1 -3.1695 5.7494 2.6155 38 1 -3.8360 4.2112 3.2140 39 1 -4.5398 3.9779 5.5241 40 1 -5.3545 5.1193 7.5481 41 1 -4.9670 7.5334 7.8404 42 1 -3.7571 8.8042 6.1129 43 1 -2.9343 7.6608 4.0932 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358063011.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:19 Heat of formation + Delta-G solvation = -90.651749 kcal Electronic energy + Delta-G solvation = -22210.185556 eV Core-core repulsion = 18833.098640 eV Total energy + Delta-G solvation = -3377.086915 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.76933 -40.20386 -38.64020 -36.82610 -34.40898 -34.28617 -32.89064 -31.75779 -30.24940 -29.16660 -27.71573 -24.93065 -24.36639 -23.44564 -22.23662 -21.79281 -21.12202 -18.98476 -18.02273 -17.61889 -17.43010 -17.26221 -16.86058 -16.29863 -16.10511 -15.81161 -15.64896 -15.19436 -14.59053 -14.39750 -14.25133 -14.11624 -13.83822 -13.62633 -13.36876 -13.32356 -13.16263 -12.87029 -12.70154 -12.35649 -12.28147 -12.13521 -12.05312 -11.93030 -11.79469 -11.58454 -11.03837 -10.66119 -10.62820 -10.48169 -9.80660 -9.63363 -9.62942 -8.15281 -6.32747 0.42098 0.51411 1.44982 1.46109 1.57858 1.83266 2.07988 2.43635 2.86908 3.13680 3.21142 3.89821 3.94953 3.99908 4.19398 4.19598 4.22563 4.32705 4.33913 4.34931 4.46661 4.49496 4.57342 4.63480 4.66278 4.76614 4.93949 4.96905 5.06629 5.19150 5.19993 5.26008 5.44253 5.56462 5.59025 5.63105 5.64523 5.73009 5.79547 5.91050 6.13572 6.15164 6.18263 6.75859 7.00849 7.34697 7.60527 8.90400 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.035879 B = 0.002380 C = 0.002300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.222666 B =11759.535773 C =12173.211445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.121 4.121 3 C 0.278 3.722 4 H -0.005 1.005 5 C -0.545 4.545 6 H 0.074 0.926 7 C 0.013 3.987 8 N -0.916 5.916 9 Si 0.972 3.028 10 H -0.259 1.259 11 H -0.279 1.279 12 H -0.286 1.286 13 N -0.703 5.703 14 C 0.494 3.506 15 O -0.579 6.579 16 C 0.054 3.946 17 O -0.395 6.395 18 C 0.066 3.934 19 C -0.076 4.076 20 C -0.091 4.091 21 C -0.127 4.127 22 C -0.126 4.126 23 C -0.129 4.129 24 C -0.126 4.126 25 C -0.128 4.128 26 H 0.046 0.954 27 H 0.042 0.958 28 H 0.022 0.978 29 H 0.072 0.928 30 H 0.044 0.956 31 H 0.264 0.736 32 H 0.406 0.594 33 H 0.106 0.894 34 H 0.103 0.897 35 H 0.064 0.936 36 H 0.063 0.937 37 H 0.074 0.926 38 H 0.076 0.924 39 H 0.129 0.871 40 H 0.141 0.859 41 H 0.142 0.858 42 H 0.140 0.860 43 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.427 11.013 20.555 25.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.160 4.160 3 C 0.174 3.826 4 H 0.013 0.987 5 C -0.584 4.584 6 H 0.092 0.908 7 C -0.187 4.187 8 N -0.554 5.554 9 Si 0.797 3.203 10 H -0.183 1.183 11 H -0.205 1.205 12 H -0.212 1.212 13 N -0.354 5.354 14 C 0.280 3.720 15 O -0.459 6.459 16 C -0.026 4.026 17 O -0.315 6.315 18 C -0.010 4.010 19 C -0.114 4.114 20 C -0.091 4.091 21 C -0.145 4.145 22 C -0.144 4.144 23 C -0.147 4.147 24 C -0.144 4.144 25 C -0.146 4.146 26 H 0.065 0.935 27 H 0.061 0.939 28 H 0.041 0.959 29 H 0.090 0.910 30 H 0.063 0.937 31 H 0.074 0.926 32 H 0.242 0.758 33 H 0.124 0.876 34 H 0.121 0.879 35 H 0.082 0.918 36 H 0.081 0.919 37 H 0.093 0.907 38 H 0.094 0.906 39 H 0.147 0.853 40 H 0.158 0.842 41 H 0.160 0.840 42 H 0.158 0.842 43 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -12.070 10.883 19.552 25.424 hybrid contribution 1.196 -0.152 -0.258 1.233 sum -10.874 10.731 19.294 24.610 Atomic orbital electron populations 1.21671 0.97144 0.99118 1.00119 1.21789 0.93562 0.99178 1.01447 1.18381 0.93740 0.89155 0.81278 0.98662 1.21610 0.91271 1.38779 1.06707 0.90755 1.25804 1.03394 0.94446 0.95063 1.70066 1.37030 1.38427 1.09924 0.85300 0.79040 0.77784 0.78200 1.18280 1.20498 1.21186 1.46146 1.15358 1.56053 1.17822 1.20958 0.82047 0.78951 0.90040 1.90675 1.52464 1.60447 1.42291 1.22264 0.85893 0.99664 0.94730 1.87969 1.29998 1.75197 1.38300 1.22632 0.95077 0.96312 0.86948 1.20407 0.94938 1.00370 0.95678 1.19749 0.99212 0.94365 0.95790 1.21311 0.98472 1.00536 0.94175 1.21452 0.99839 0.95316 0.97744 1.21508 0.98827 0.94572 0.99822 1.21449 0.98066 1.00995 0.93871 1.21307 1.00400 0.94112 0.98745 0.93483 0.93871 0.95874 0.91004 0.93717 0.92636 0.75845 0.87647 0.87898 0.91770 0.91905 0.90697 0.90577 0.85272 0.84156 0.84005 0.84206 0.85369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.70 8.52 71.98 0.61 -5.09 16 2 C -0.12 -6.00 5.45 30.59 0.17 -5.83 16 3 C 0.28 14.29 2.24 44.24 0.10 14.39 16 4 H 0.00 -0.28 7.57 -2.39 -0.02 -0.30 16 5 C -0.55 -28.61 8.73 25.60 0.22 -28.39 16 6 H 0.07 3.62 7.74 -2.91 -0.02 3.59 16 7 C 0.01 0.69 5.29 84.65 0.45 1.14 16 8 N -0.92 -52.61 11.29 21.45 0.24 -52.37 16 9 Si 0.97 41.86 29.54 68.60 2.03 43.88 16 10 H -0.26 -10.47 7.11 99.48 0.71 -9.77 16 11 H -0.28 -11.79 7.11 99.48 0.71 -11.09 16 12 H -0.29 -12.36 7.11 99.48 0.71 -11.65 16 13 N -0.70 -28.54 5.02 -446.09 -2.24 -30.78 16 14 C 0.49 19.78 6.48 87.66 0.57 20.34 16 15 O -0.58 -29.18 13.67 16.00 0.22 -28.96 16 16 C 0.05 1.49 6.42 71.24 0.46 1.95 16 17 O -0.40 -12.18 9.88 -129.94 -1.28 -13.47 16 18 C 0.07 1.42 5.92 71.98 0.43 1.85 16 19 C -0.08 -1.58 5.72 29.85 0.17 -1.41 16 20 C -0.09 -1.66 5.13 -19.87 -0.10 -1.76 16 21 C -0.13 -2.09 9.70 22.27 0.22 -1.88 16 22 C -0.13 -1.74 10.05 22.27 0.22 -1.52 16 23 C -0.13 -1.68 10.05 22.27 0.22 -1.45 16 24 C -0.13 -1.76 10.05 22.27 0.22 -1.54 16 25 C -0.13 -2.13 9.70 22.27 0.22 -1.91 16 26 H 0.05 1.90 8.14 -2.38 -0.02 1.88 16 27 H 0.04 1.93 5.67 -2.39 -0.01 1.92 16 28 H 0.02 1.15 7.85 -2.39 -0.02 1.13 16 29 H 0.07 3.99 5.95 -2.38 -0.01 3.98 16 30 H 0.04 2.06 8.14 -2.39 -0.02 2.04 16 31 H 0.26 14.36 8.31 -92.71 -0.77 13.59 16 32 H 0.41 13.39 8.54 -92.70 -0.79 12.60 16 33 H 0.11 2.22 8.14 -2.39 -0.02 2.20 16 34 H 0.10 2.24 8.14 -2.39 -0.02 2.22 16 35 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.07 1.63 8.09 -2.38 -0.02 1.61 16 38 H 0.08 1.64 8.08 -2.39 -0.02 1.62 16 39 H 0.13 1.86 8.06 -2.91 -0.02 1.84 16 40 H 0.14 1.32 8.06 -2.91 -0.02 1.29 16 41 H 0.14 1.14 8.06 -2.91 -0.02 1.12 16 42 H 0.14 1.34 8.06 -2.91 -0.02 1.32 16 43 H 0.13 1.90 8.06 -2.91 -0.02 1.87 16 Total: -1.00 -70.80 357.09 3.34 -67.47 By element: Atomic # 1 Polarization: 25.12 SS G_CDS: 0.20 Total: 25.32 kcal Atomic # 6 Polarization: -15.27 SS G_CDS: 4.17 Total: -11.10 kcal Atomic # 7 Polarization: -81.15 SS G_CDS: -2.00 Total: -83.15 kcal Atomic # 8 Polarization: -41.36 SS G_CDS: -1.06 Total: -42.43 kcal Atomic # 14 Polarization: 41.86 SS G_CDS: 2.03 Total: 43.88 kcal Total: -70.80 3.34 -67.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358063011.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.185 kcal (2) G-P(sol) polarization free energy of solvation -70.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds