Wall clock time and date at job start Tue Mar 31 2020 06:37:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50703 * 120.00179 * 2 1 4 4 N 1.46501 * 109.46915 * 124.99784 * 3 2 1 5 5 C 1.46496 * 119.99950 * 264.84347 * 4 3 2 6 6 C 1.50696 * 109.47200 * 275.87302 * 5 4 3 7 7 H 1.08003 * 120.00193 * 0.02562 * 6 5 4 8 8 C 1.37882 * 120.00079 * 179.97438 * 6 5 4 9 9 N 1.31511 * 119.99855 * 180.02562 * 8 6 5 10 10 Si 1.86800 * 119.99745 * 0.02562 * 8 6 5 11 11 H 1.48502 * 109.47242 * 89.99697 * 10 8 6 12 12 H 1.48505 * 109.46819 * 209.99503 * 10 8 6 13 13 H 1.48496 * 109.47123 * 329.99561 * 10 8 6 14 14 C 1.34780 * 119.99744 * 84.84941 * 4 3 2 15 15 O 1.21280 * 120.00022 * 5.13686 * 14 4 3 16 16 C 1.50698 * 119.99975 * 185.14259 * 14 4 3 17 17 C 1.53037 * 109.36591 * 187.48432 * 16 14 4 18 18 C 1.53814 * 108.97614 * 184.60999 * 17 16 14 19 19 H 1.08996 * 112.37694 * 188.71679 * 18 17 16 20 20 C 1.54602 * 107.57840 * 313.78757 * 18 17 16 21 21 C 1.54626 * 105.60018 * 87.43303 * 20 18 17 22 22 C 1.54606 * 105.59840 * 359.97438 * 21 20 18 23 23 H 1.09008 * 113.04494 * 147.89859 * 22 21 20 24 24 C 1.53050 * 109.36340 * 66.82584 * 16 14 4 25 25 C 1.52730 * 103.86841 * 25.66578 * 22 21 20 26 26 O 1.20752 * 128.88709 * 138.61453 * 25 22 21 27 27 H 1.07994 * 120.00175 * 179.97438 * 1 2 3 28 28 H 1.08007 * 119.99611 * 0.02562 * 1 2 3 29 29 H 1.07997 * 119.99636 * 179.97438 * 2 1 3 30 30 H 1.09000 * 109.47179 * 4.99565 * 3 2 1 31 31 H 1.08998 * 109.46633 * 244.99574 * 3 2 1 32 32 H 1.09000 * 109.46976 * 35.87757 * 5 4 3 33 33 H 1.09004 * 109.47012 * 155.87677 * 5 4 3 34 34 H 0.97000 * 119.99694 * 180.02562 * 9 8 6 35 35 H 1.09001 * 109.36086 * 307.22662 * 16 14 4 36 36 H 1.09001 * 109.55397 * 64.76824 * 17 16 14 37 37 H 1.09003 * 109.64040 * 304.51014 * 17 16 14 38 38 H 1.09005 * 110.20061 * 206.61412 * 20 18 17 39 39 H 1.08996 * 110.20293 * 328.49509 * 20 18 17 40 40 H 1.09009 * 110.14933 * 241.03138 * 21 20 18 41 41 H 1.08993 * 110.43333 * 119.11519 * 21 20 18 42 42 H 1.08990 * 109.55612 * 295.23271 * 24 16 14 43 43 H 1.08999 * 109.55297 * 55.54157 * 24 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9938 1.3318 1.1315 5 6 2.5974 1.9668 2.3908 6 6 2.8528 3.4496 2.3079 7 1 3.2685 3.8765 1.4071 8 6 2.5549 4.2616 3.3817 9 7 2.7774 5.5557 3.3092 10 14 1.8353 3.5233 4.9395 11 1 2.9361 3.1339 5.8571 12 1 0.9661 4.5258 5.6066 13 1 1.0317 2.3236 4.5933 14 6 4.2143 0.7724 1.0138 15 8 4.5780 0.3299 -0.0553 16 6 5.1270 0.6965 2.2105 17 6 6.5032 0.1941 1.7681 18 6 7.3914 0.0096 3.0103 19 1 8.4290 -0.2006 2.7510 20 6 7.2310 1.2706 3.8904 21 6 6.0108 0.9915 4.7982 22 6 5.5146 -0.4192 4.4058 23 1 5.0794 -0.9664 5.2421 24 6 4.5269 -0.2566 3.2468 25 6 6.7601 -1.1025 3.8450 26 8 7.1450 -2.2344 4.0144 27 1 -0.5400 -0.9352 -0.0004 28 1 -0.5400 0.9354 -0.0004 29 1 1.8499 -0.9353 0.0004 30 1 1.3587 2.1317 0.0895 31 1 2.6214 1.4025 -0.9314 32 1 1.5366 1.7901 2.5685 33 1 3.1785 1.5432 3.2099 34 1 2.5681 6.1269 4.0648 35 1 5.2287 1.6884 2.6508 36 1 6.9597 0.9229 1.0983 37 1 6.3963 -0.7596 1.2512 38 1 8.1254 1.4245 4.4941 39 1 7.0426 2.1439 3.2660 40 1 5.2296 1.7294 4.6146 41 1 6.3052 1.0090 5.8474 42 1 3.5890 0.1543 3.6203 43 1 4.3440 -1.2276 2.7866 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359428845.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:17 Heat of formation + Delta-G solvation = -53.829831 kcal Electronic energy + Delta-G solvation = -24796.571347 eV Core-core repulsion = 21421.081150 eV Total energy + Delta-G solvation = -3375.490197 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.24131 -39.11781 -37.25232 -35.66116 -33.65703 -32.40679 -31.65576 -31.44704 -28.24668 -27.48570 -25.60372 -24.16364 -22.93717 -21.70609 -20.37845 -19.84923 -18.70653 -18.22895 -17.08367 -16.81386 -16.54279 -15.72873 -15.17130 -14.76573 -14.54151 -14.38883 -14.29790 -13.68810 -13.38774 -13.19459 -12.90471 -12.87554 -12.78990 -12.46516 -12.24689 -11.96795 -11.67119 -11.46952 -11.40643 -11.21361 -11.07334 -10.99650 -10.71567 -10.52515 -10.38038 -10.34682 -10.29285 -9.70918 -9.33184 -9.09997 -8.98965 -8.77007 -7.85025 -6.29265 -4.31137 1.94160 2.44661 3.08573 3.18041 3.20406 3.21218 3.83466 4.07302 4.18312 4.42637 4.63875 4.78790 4.99306 4.99768 5.06303 5.14571 5.18183 5.26226 5.30184 5.44819 5.45116 5.47123 5.70834 5.84808 5.87933 5.90892 5.97372 6.02563 6.02788 6.08458 6.12056 6.25617 6.26564 6.34584 6.42544 6.49473 6.64109 6.82557 6.92139 7.27580 7.37510 7.51254 8.03318 8.33976 8.73905 8.83162 9.29624 10.83248 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.011899 B = 0.007599 C = 0.005570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2352.503499 B = 3683.801736 C = 5025.883184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.156 4.156 3 C 0.143 3.857 4 N -0.585 5.585 5 C 0.198 3.802 6 C -0.542 4.542 7 H 0.079 0.921 8 C 0.079 3.921 9 N -0.888 5.888 10 Si 0.863 3.137 11 H -0.269 1.269 12 H -0.283 1.283 13 H -0.263 1.263 14 C 0.523 3.477 15 O -0.566 6.566 16 C -0.114 4.114 17 C -0.084 4.084 18 C -0.148 4.148 19 H 0.102 0.898 20 C -0.117 4.117 21 C -0.122 4.122 22 C -0.146 4.146 23 H 0.102 0.898 24 C -0.106 4.106 25 C 0.377 3.623 26 O -0.443 6.443 27 H 0.093 0.907 28 H 0.098 0.902 29 H 0.104 0.896 30 H 0.087 0.913 31 H 0.081 0.919 32 H 0.032 0.968 33 H 0.043 0.957 34 H 0.267 0.733 35 H 0.121 0.879 36 H 0.082 0.918 37 H 0.073 0.927 38 H 0.069 0.931 39 H 0.087 0.913 40 H 0.091 0.909 41 H 0.070 0.930 42 H 0.095 0.905 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.787 -8.710 1.834 9.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.175 4.175 3 C 0.021 3.979 4 N -0.314 5.314 5 C 0.077 3.923 6 C -0.581 4.581 7 H 0.097 0.903 8 C -0.125 4.125 9 N -0.526 5.526 10 Si 0.689 3.311 11 H -0.195 1.195 12 H -0.208 1.208 13 H -0.188 1.188 14 C 0.312 3.688 15 O -0.447 6.447 16 C -0.135 4.135 17 C -0.122 4.122 18 C -0.167 4.167 19 H 0.120 0.880 20 C -0.154 4.154 21 C -0.160 4.160 22 C -0.165 4.165 23 H 0.120 0.880 24 C -0.143 4.143 25 C 0.252 3.748 26 O -0.315 6.315 27 H 0.111 0.889 28 H 0.116 0.884 29 H 0.122 0.878 30 H 0.106 0.894 31 H 0.099 0.901 32 H 0.050 0.950 33 H 0.061 0.939 34 H 0.077 0.923 35 H 0.139 0.861 36 H 0.101 0.899 37 H 0.091 0.909 38 H 0.088 0.912 39 H 0.106 0.894 40 H 0.110 0.890 41 H 0.089 0.911 42 H 0.113 0.887 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 3.140 -9.326 1.474 9.950 hybrid contribution -0.594 -0.027 0.953 1.123 sum 2.546 -9.353 2.427 9.993 Atomic orbital electron populations 1.23796 0.95782 1.01619 1.01878 1.23406 0.96076 0.99353 0.98712 1.20427 0.92260 0.94742 0.90520 1.47869 1.13541 1.55009 1.14960 1.20101 0.96403 0.94203 0.81566 1.21372 1.44093 0.89807 1.02804 0.90330 1.24853 0.94780 0.94634 0.98271 1.69883 1.47261 1.03762 1.31664 0.87044 0.80194 0.79787 0.84033 1.19459 1.20825 1.18763 1.20347 0.81894 0.77160 0.89443 1.90606 1.74910 1.49897 1.29271 1.21497 0.94305 1.02928 0.94797 1.21446 0.92805 1.02887 0.95050 1.22959 1.00820 0.95990 0.96962 0.88002 1.22350 0.98232 0.97112 0.97743 1.22411 0.98735 0.95234 0.99572 1.22796 0.96144 0.98122 0.99466 0.87979 1.21759 0.98784 0.99721 0.94036 1.25592 0.85721 0.86847 0.76673 1.90372 1.67043 1.19584 1.54518 0.88885 0.88354 0.87841 0.89430 0.90059 0.95044 0.93930 0.92297 0.86134 0.89909 0.90878 0.91199 0.89437 0.89048 0.91108 0.88662 0.91424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.59 14.32 29.01 0.42 -2.17 16 2 C -0.16 -2.42 9.80 -36.03 -0.35 -2.77 16 3 C 0.14 2.54 5.86 -5.19 -0.03 2.51 16 4 N -0.58 -11.26 2.45 -176.44 -0.43 -11.70 16 5 C 0.20 4.05 3.71 -5.20 -0.02 4.04 16 6 C -0.54 -13.41 9.93 -34.44 -0.34 -13.76 16 7 H 0.08 2.21 8.06 -52.48 -0.42 1.78 16 8 C 0.08 2.00 5.47 -17.82 -0.10 1.90 16 9 N -0.89 -24.62 13.96 55.43 0.77 -23.84 16 10 Si 0.86 18.50 27.47 -169.99 -4.67 13.83 16 11 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 12 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 13 H -0.26 -5.36 6.54 56.52 0.37 -4.99 16 14 C 0.52 9.95 6.91 -10.99 -0.08 9.87 16 15 O -0.57 -11.92 15.51 5.56 0.09 -11.83 16 16 C -0.11 -1.82 1.31 -91.73 -0.12 -1.94 16 17 C -0.08 -1.21 4.14 -26.29 -0.11 -1.32 16 18 C -0.15 -1.85 4.08 -89.50 -0.37 -2.21 16 19 H 0.10 1.14 8.14 -51.93 -0.42 0.71 16 20 C -0.12 -1.37 5.84 -25.03 -0.15 -1.51 16 21 C -0.12 -1.51 5.84 -25.03 -0.15 -1.66 16 22 C -0.15 -1.88 4.04 -89.84 -0.36 -2.24 16 23 H 0.10 1.19 8.14 -51.92 -0.42 0.77 16 24 C -0.11 -1.51 4.33 -26.63 -0.12 -1.63 16 25 C 0.38 5.29 6.95 -27.02 -0.19 5.10 16 26 O -0.44 -7.39 17.99 6.01 0.11 -7.29 16 27 H 0.09 1.08 8.06 -52.49 -0.42 0.65 16 28 H 0.10 1.27 7.84 -52.48 -0.41 0.86 16 29 H 0.10 1.63 8.06 -52.49 -0.42 1.20 16 30 H 0.09 1.55 7.68 -51.93 -0.40 1.15 16 31 H 0.08 1.48 7.51 -51.93 -0.39 1.09 16 32 H 0.03 0.65 7.17 -51.93 -0.37 0.28 16 33 H 0.04 0.81 3.36 -51.93 -0.17 0.64 16 34 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 35 H 0.12 2.02 4.83 -51.93 -0.25 1.76 16 36 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 37 H 0.07 1.12 7.85 -51.93 -0.41 0.71 16 38 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.09 1.08 7.00 -51.93 -0.36 0.72 16 40 H 0.09 1.28 6.98 -51.92 -0.36 0.92 16 41 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.10 1.40 5.43 -51.93 -0.28 1.12 16 43 H 0.07 0.97 8.13 -51.93 -0.42 0.55 16 LS Contribution 337.67 15.07 5.09 5.09 Total: -1.00 -29.02 337.67 -7.49 -36.50 By element: Atomic # 1 Polarization: 13.42 SS G_CDS: -6.39 Total: 7.03 kcal Atomic # 6 Polarization: -5.74 SS G_CDS: -2.06 Total: -7.79 kcal Atomic # 7 Polarization: -35.88 SS G_CDS: 0.34 Total: -35.54 kcal Atomic # 8 Polarization: -19.31 SS G_CDS: 0.19 Total: -19.12 kcal Atomic # 14 Polarization: 18.50 SS G_CDS: -4.67 Total: 13.83 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -29.02 -7.49 -36.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359428845.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.325 kcal (2) G-P(sol) polarization free energy of solvation -29.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds