Wall clock time and date at job start Tue Mar 31 2020 06:37:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50703 * 120.00179 * 2 1 4 4 N 1.46501 * 109.46915 * 124.99784 * 3 2 1 5 5 C 1.46496 * 119.99950 * 264.84347 * 4 3 2 6 6 C 1.50696 * 109.47200 * 275.87302 * 5 4 3 7 7 H 1.08003 * 120.00193 * 0.02562 * 6 5 4 8 8 C 1.37882 * 120.00079 * 179.97438 * 6 5 4 9 9 N 1.31511 * 119.99855 * 180.02562 * 8 6 5 10 10 Si 1.86800 * 119.99745 * 0.02562 * 8 6 5 11 11 H 1.48502 * 109.47242 * 89.99697 * 10 8 6 12 12 H 1.48505 * 109.46819 * 209.99503 * 10 8 6 13 13 H 1.48496 * 109.47123 * 329.99561 * 10 8 6 14 14 C 1.34780 * 119.99744 * 84.84941 * 4 3 2 15 15 O 1.21280 * 120.00022 * 5.13686 * 14 4 3 16 16 C 1.50698 * 119.99975 * 185.14259 * 14 4 3 17 17 C 1.53037 * 109.36591 * 187.48432 * 16 14 4 18 18 C 1.53814 * 108.97614 * 184.60999 * 17 16 14 19 19 H 1.08996 * 112.37694 * 188.71679 * 18 17 16 20 20 C 1.54602 * 107.57840 * 313.78757 * 18 17 16 21 21 C 1.54626 * 105.60018 * 87.43303 * 20 18 17 22 22 C 1.54606 * 105.59840 * 359.97438 * 21 20 18 23 23 H 1.09008 * 113.04494 * 147.89859 * 22 21 20 24 24 C 1.53050 * 109.36340 * 66.82584 * 16 14 4 25 25 C 1.52730 * 103.86841 * 25.66578 * 22 21 20 26 26 O 1.20752 * 128.88709 * 138.61453 * 25 22 21 27 27 H 1.07994 * 120.00175 * 179.97438 * 1 2 3 28 28 H 1.08007 * 119.99611 * 0.02562 * 1 2 3 29 29 H 1.07997 * 119.99636 * 179.97438 * 2 1 3 30 30 H 1.09000 * 109.47179 * 4.99565 * 3 2 1 31 31 H 1.08998 * 109.46633 * 244.99574 * 3 2 1 32 32 H 1.09000 * 109.46976 * 35.87757 * 5 4 3 33 33 H 1.09004 * 109.47012 * 155.87677 * 5 4 3 34 34 H 0.97000 * 119.99694 * 180.02562 * 9 8 6 35 35 H 1.09001 * 109.36086 * 307.22662 * 16 14 4 36 36 H 1.09001 * 109.55397 * 64.76824 * 17 16 14 37 37 H 1.09003 * 109.64040 * 304.51014 * 17 16 14 38 38 H 1.09005 * 110.20061 * 206.61412 * 20 18 17 39 39 H 1.08996 * 110.20293 * 328.49509 * 20 18 17 40 40 H 1.09009 * 110.14933 * 241.03138 * 21 20 18 41 41 H 1.08993 * 110.43333 * 119.11519 * 21 20 18 42 42 H 1.08990 * 109.55612 * 295.23271 * 24 16 14 43 43 H 1.08999 * 109.55297 * 55.54157 * 24 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9938 1.3318 1.1315 5 6 2.5974 1.9668 2.3908 6 6 2.8528 3.4496 2.3079 7 1 3.2685 3.8765 1.4071 8 6 2.5549 4.2616 3.3817 9 7 2.7774 5.5557 3.3092 10 14 1.8353 3.5233 4.9395 11 1 2.9361 3.1339 5.8571 12 1 0.9661 4.5258 5.6066 13 1 1.0317 2.3236 4.5933 14 6 4.2143 0.7724 1.0138 15 8 4.5780 0.3299 -0.0553 16 6 5.1270 0.6965 2.2105 17 6 6.5032 0.1941 1.7681 18 6 7.3914 0.0096 3.0103 19 1 8.4290 -0.2006 2.7510 20 6 7.2310 1.2706 3.8904 21 6 6.0108 0.9915 4.7982 22 6 5.5146 -0.4192 4.4058 23 1 5.0794 -0.9664 5.2421 24 6 4.5269 -0.2566 3.2468 25 6 6.7601 -1.1025 3.8450 26 8 7.1450 -2.2344 4.0144 27 1 -0.5400 -0.9352 -0.0004 28 1 -0.5400 0.9354 -0.0004 29 1 1.8499 -0.9353 0.0004 30 1 1.3587 2.1317 0.0895 31 1 2.6214 1.4025 -0.9314 32 1 1.5366 1.7901 2.5685 33 1 3.1785 1.5432 3.2099 34 1 2.5681 6.1269 4.0648 35 1 5.2287 1.6884 2.6508 36 1 6.9597 0.9229 1.0983 37 1 6.3963 -0.7596 1.2512 38 1 8.1254 1.4245 4.4941 39 1 7.0426 2.1439 3.2660 40 1 5.2296 1.7294 4.6146 41 1 6.3052 1.0090 5.8474 42 1 3.5890 0.1543 3.6203 43 1 4.3440 -1.2276 2.7866 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359428845.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:16 Heat of formation + Delta-G solvation = -69.633202 kcal Electronic energy + Delta-G solvation = -24797.256633 eV Core-core repulsion = 21421.081150 eV Total energy + Delta-G solvation = -3376.175483 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.42947 -40.53754 -38.45455 -37.20508 -35.15582 -34.13325 -32.85316 -32.54603 -29.98711 -28.64479 -26.94875 -25.26480 -24.63245 -23.07045 -21.43403 -21.05031 -20.00167 -19.46798 -18.98825 -18.22083 -17.80078 -17.12281 -16.45872 -16.24689 -15.97119 -15.67802 -15.51227 -14.98913 -14.75996 -14.52283 -14.34620 -14.06843 -14.01237 -13.90732 -13.55049 -13.35630 -13.12080 -12.82408 -12.68677 -12.43433 -12.37783 -12.34820 -12.24546 -11.91912 -11.66046 -11.61130 -11.51652 -11.32586 -10.79008 -10.70343 -10.29318 -10.18687 -9.45542 -8.26177 -6.33900 0.82769 1.26303 1.42683 1.46526 1.54421 1.69688 2.37628 2.39660 3.00829 3.07816 3.36986 3.49868 3.57339 3.88139 3.93781 3.98617 4.08555 4.13106 4.16129 4.19767 4.31404 4.45067 4.48678 4.56751 4.69437 4.78715 4.79331 4.79975 4.83342 4.94108 4.98947 5.02702 5.08350 5.11214 5.16260 5.33876 5.38959 5.49006 5.59413 5.66514 5.88499 6.19934 6.41948 6.63151 6.72146 7.23289 7.35253 8.89938 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.011899 B = 0.007599 C = 0.005570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2352.503499 B = 3683.801736 C = 5025.883184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.178 4.178 3 C 0.140 3.860 4 N -0.590 5.590 5 C 0.208 3.792 6 C -0.542 4.542 7 H 0.028 0.972 8 C 0.025 3.975 9 N -0.941 5.941 10 Si 0.928 3.072 11 H -0.245 1.245 12 H -0.291 1.291 13 H -0.240 1.240 14 C 0.516 3.484 15 O -0.592 6.592 16 C -0.110 4.110 17 C -0.080 4.080 18 C -0.140 4.140 19 H 0.118 0.882 20 C -0.116 4.116 21 C -0.123 4.123 22 C -0.139 4.139 23 H 0.122 0.878 24 C -0.102 4.102 25 C 0.380 3.620 26 O -0.470 6.470 27 H 0.120 0.880 28 H 0.104 0.896 29 H 0.100 0.900 30 H 0.081 0.919 31 H 0.066 0.934 32 H 0.039 0.961 33 H 0.067 0.933 34 H 0.268 0.732 35 H 0.114 0.886 36 H 0.078 0.922 37 H 0.061 0.939 38 H 0.093 0.907 39 H 0.077 0.923 40 H 0.075 0.925 41 H 0.092 0.908 42 H 0.096 0.904 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.211 -10.459 4.003 11.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.197 4.197 3 C 0.018 3.982 4 N -0.319 5.319 5 C 0.087 3.913 6 C -0.580 4.580 7 H 0.046 0.954 8 C -0.174 4.174 9 N -0.580 5.580 10 Si 0.750 3.250 11 H -0.169 1.169 12 H -0.217 1.217 13 H -0.163 1.163 14 C 0.305 3.695 15 O -0.474 6.474 16 C -0.131 4.131 17 C -0.118 4.118 18 C -0.159 4.159 19 H 0.136 0.864 20 C -0.153 4.153 21 C -0.160 4.160 22 C -0.158 4.158 23 H 0.140 0.860 24 C -0.139 4.139 25 C 0.256 3.744 26 O -0.344 6.344 27 H 0.138 0.862 28 H 0.122 0.878 29 H 0.118 0.882 30 H 0.100 0.900 31 H 0.084 0.916 32 H 0.057 0.943 33 H 0.084 0.916 34 H 0.077 0.923 35 H 0.132 0.868 36 H 0.097 0.903 37 H 0.080 0.920 38 H 0.111 0.889 39 H 0.095 0.905 40 H 0.094 0.906 41 H 0.111 0.889 42 H 0.114 0.886 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 2.562 -11.089 3.626 11.945 hybrid contribution -0.441 0.588 0.116 0.745 sum 2.121 -10.501 3.742 11.348 Atomic orbital electron populations 1.24046 0.94913 1.03136 0.98120 1.23139 0.96692 0.97711 1.02140 1.20463 0.92018 0.96202 0.89519 1.47962 1.14124 1.54778 1.15018 1.19948 0.97048 0.91461 0.82829 1.21484 1.43339 0.92230 1.00953 0.95379 1.25719 0.95003 0.94703 1.02020 1.70052 1.49245 1.05711 1.33020 0.86010 0.80121 0.79408 0.79503 1.16881 1.21731 1.16304 1.20941 0.81965 0.76470 0.90098 1.90583 1.75296 1.51004 1.30519 1.21507 0.94487 1.03191 0.93907 1.21381 0.92444 1.01995 0.95973 1.22946 1.01149 0.95983 0.95799 0.86351 1.22363 0.99194 0.96067 0.97674 1.22435 0.98386 0.94212 1.00995 1.22805 0.95183 0.98543 0.99262 0.86001 1.21715 0.99095 0.99064 0.94047 1.25809 0.85944 0.86423 0.76205 1.90369 1.67815 1.20665 1.55527 0.86213 0.87814 0.88178 0.90043 0.91587 0.94344 0.91582 0.92308 0.86847 0.90336 0.92022 0.88854 0.90474 0.90602 0.88895 0.88569 0.91460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.01 14.32 67.78 0.97 -3.04 16 2 C -0.18 -5.34 9.80 25.65 0.25 -5.09 16 3 C 0.14 5.08 5.86 85.63 0.50 5.58 16 4 N -0.59 -22.95 2.45 -830.51 -2.04 -24.99 16 5 C 0.21 8.36 3.71 85.63 0.32 8.68 16 6 C -0.54 -27.33 9.93 25.60 0.25 -27.08 16 7 H 0.03 1.66 8.06 -2.91 -0.02 1.64 16 8 C 0.02 1.26 5.47 84.66 0.46 1.73 16 9 N -0.94 -53.44 13.96 21.45 0.30 -53.14 16 10 Si 0.93 36.70 27.47 68.60 1.88 38.58 16 11 H -0.25 -8.75 7.11 99.48 0.71 -8.04 16 12 H -0.29 -11.94 7.11 99.48 0.71 -11.23 16 13 H -0.24 -8.55 6.54 99.48 0.65 -7.90 16 14 C 0.52 19.86 6.91 87.66 0.61 20.47 16 15 O -0.59 -25.56 15.51 -3.03 -0.05 -25.61 16 16 C -0.11 -3.45 1.31 -11.51 -0.02 -3.47 16 17 C -0.08 -2.26 4.14 30.88 0.13 -2.14 16 18 C -0.14 -3.22 4.08 -10.07 -0.04 -3.27 16 19 H 0.12 2.37 8.14 -2.39 -0.02 2.36 16 20 C -0.12 -2.44 5.84 31.69 0.19 -2.26 16 21 C -0.12 -2.68 5.84 31.69 0.19 -2.49 16 22 C -0.14 -3.17 4.04 -10.29 -0.04 -3.21 16 23 H 0.12 2.37 8.14 -2.38 -0.02 2.35 16 24 C -0.10 -2.72 4.33 30.66 0.13 -2.59 16 25 C 0.38 9.80 6.95 30.41 0.21 10.01 16 26 O -0.47 -14.80 17.99 -1.43 -0.03 -14.83 16 27 H 0.12 2.32 8.06 -2.91 -0.02 2.30 16 28 H 0.10 2.44 7.84 -2.91 -0.02 2.41 16 29 H 0.10 3.08 8.06 -2.91 -0.02 3.06 16 30 H 0.08 2.96 7.68 -2.39 -0.02 2.94 16 31 H 0.07 2.53 7.51 -2.39 -0.02 2.51 16 32 H 0.04 1.51 7.17 -2.39 -0.02 1.50 16 33 H 0.07 2.38 3.36 -2.39 -0.01 2.37 16 34 H 0.27 14.25 8.31 -92.71 -0.77 13.48 16 35 H 0.11 3.76 4.83 -2.39 -0.01 3.75 16 36 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 37 H 0.06 1.89 7.85 -2.39 -0.02 1.87 16 38 H 0.09 1.57 8.14 -2.38 -0.02 1.55 16 39 H 0.08 1.82 7.00 -2.39 -0.02 1.80 16 40 H 0.08 1.93 6.98 -2.38 -0.02 1.91 16 41 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 42 H 0.10 2.56 5.43 -2.39 -0.01 2.55 16 43 H 0.07 1.82 8.13 -2.39 -0.02 1.80 16 Total: -1.00 -64.41 337.67 5.13 -59.29 By element: Atomic # 1 Polarization: 27.89 SS G_CDS: 0.95 Total: 28.84 kcal Atomic # 6 Polarization: -12.26 SS G_CDS: 4.11 Total: -8.15 kcal Atomic # 7 Polarization: -76.39 SS G_CDS: -1.74 Total: -78.13 kcal Atomic # 8 Polarization: -40.36 SS G_CDS: -0.07 Total: -40.43 kcal Atomic # 14 Polarization: 36.70 SS G_CDS: 1.88 Total: 38.58 kcal Total: -64.41 5.13 -59.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359428845.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.347 kcal (2) G-P(sol) polarization free energy of solvation -64.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds