Wall clock time and date at job start Tue Mar 31 2020 06:33:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.47225 * 2 1 4 4 N 1.46495 * 109.47323 * 180.02562 * 3 2 1 5 5 C 1.36936 * 119.99849 * 270.00359 * 4 3 2 6 6 H 1.08004 * 120.00288 * 38.12577 * 5 4 3 7 7 C 1.38816 * 120.00222 * 218.12611 * 5 4 3 8 8 N 1.31625 * 119.99586 * 21.28108 * 7 5 4 9 9 Si 1.86798 * 120.00329 * 201.28629 * 7 5 4 10 10 H 1.48496 * 109.47418 * 89.99551 * 9 7 5 11 11 H 1.48502 * 109.46736 * 209.99959 * 9 7 5 12 12 H 1.48504 * 109.47039 * 329.99543 * 9 7 5 13 13 C 1.46494 * 120.00273 * 89.99950 * 4 3 2 14 14 C 1.53001 * 109.47490 * 264.50272 * 13 4 3 15 15 C 1.50695 * 109.47219 * 179.97438 * 14 13 4 16 16 C 1.38254 * 119.94227 * 90.00293 * 15 14 13 17 17 C 1.38194 * 120.11060 * 180.30742 * 16 15 14 18 18 C 1.38703 * 120.07068 * 359.52830 * 17 16 15 19 19 C 1.38983 * 119.81821 * 0.35354 * 18 17 16 20 20 C 1.38196 * 119.94397 * 269.97859 * 15 14 13 21 21 O 1.36103 * 120.78245 * 180.02562 * 19 18 17 22 22 C 1.43170 * 116.72174 * 342.81582 * 21 19 18 23 23 C 1.53471 * 108.24983 * 46.15804 * 22 21 19 24 24 O 1.36112 * 119.40173 * 180.02562 * 18 17 16 25 25 H 1.08996 * 109.46652 * 299.99978 * 1 2 3 26 26 H 1.08992 * 109.46944 * 59.99732 * 1 2 3 27 27 H 1.09000 * 109.46518 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.46880 * 240.00086 * 2 1 3 29 29 H 1.08999 * 109.47575 * 120.00421 * 2 1 3 30 30 H 1.09002 * 109.46623 * 60.00291 * 3 2 1 31 31 H 1.08999 * 109.47188 * 300.00658 * 3 2 1 32 32 H 0.96994 * 119.99658 * 180.02562 * 8 7 5 33 33 H 1.09002 * 109.47620 * 144.50168 * 13 4 3 34 34 H 1.09004 * 109.46986 * 24.50205 * 13 4 3 35 35 H 1.09004 * 109.47010 * 60.00120 * 14 13 4 36 36 H 1.08995 * 109.47079 * 300.00035 * 14 13 4 37 37 H 1.07995 * 119.94629 * 0.03202 * 16 15 14 38 38 H 1.08003 * 119.97089 * 179.75325 * 17 16 15 39 39 H 1.07999 * 119.96534 * 359.96630 * 20 15 14 40 40 H 1.08997 * 109.71276 * 165.84929 * 22 21 19 41 41 H 1.09004 * 109.70712 * 286.47770 * 22 21 19 42 42 H 1.09004 * 109.70835 * 59.95165 * 23 22 21 43 43 H 1.09000 * 109.71299 * 180.58030 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1902 1.4423 1.1850 6 1 3.8234 0.8646 2.0206 7 6 5.3563 2.1845 1.3130 8 7 5.5894 3.1899 0.4961 9 14 6.5946 1.7563 2.6444 10 1 7.5730 0.7737 2.1130 11 1 7.3096 2.9866 3.0693 12 1 5.8856 1.1685 3.8093 13 6 4.2370 1.4427 -1.2696 14 6 4.6116 0.0069 -1.6426 15 6 5.3641 0.0071 -2.9482 16 6 6.7418 0.1220 -2.9507 17 6 7.4348 0.1290 -4.1463 18 6 6.7505 0.0108 -5.3469 19 6 5.3657 -0.1071 -5.3444 20 6 4.6758 -0.1081 -4.1410 21 8 4.6744 -0.2247 -6.5109 22 6 5.3627 0.1535 -7.7080 23 6 6.7637 -0.4724 -7.6750 24 8 7.4467 0.0188 -6.5165 25 1 -0.3632 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3632 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8935 -0.5139 0.8899 30 1 1.6768 1.9562 0.8900 31 1 1.6767 1.9564 -0.8899 32 1 6.4043 3.7082 0.5853 33 1 5.1433 2.0394 -1.1662 34 1 3.6085 1.8690 -2.0515 35 1 3.7054 -0.5898 -1.7460 36 1 5.2401 -0.4194 -0.8607 37 1 7.2771 0.2110 -2.0169 38 1 8.5108 0.2229 -4.1457 39 1 3.5996 -0.1986 -4.1363 40 1 4.8168 -0.2129 -8.5773 41 1 5.4464 1.2392 -7.7565 42 1 6.6801 -1.5578 -7.6200 43 1 7.3135 -0.1905 -8.5730 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360016918.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:16 Heat of formation + Delta-G solvation = -57.489746 kcal Electronic energy + Delta-G solvation = -23424.730748 eV Core-core repulsion = 20049.081844 eV Total energy + Delta-G solvation = -3375.648903 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.18123 -39.28973 -38.20622 -37.86004 -34.66507 -33.86112 -32.22049 -31.81209 -30.42965 -28.53956 -27.30001 -25.94636 -24.85402 -23.67909 -22.62774 -21.76044 -21.18940 -19.50471 -18.60976 -18.17554 -18.07429 -16.88335 -16.38008 -16.11624 -15.91492 -15.77786 -15.38059 -15.34624 -15.06941 -14.83898 -14.73199 -14.42541 -13.88731 -13.75613 -13.33828 -13.20673 -12.89953 -12.74365 -12.68988 -12.53720 -12.47368 -12.25808 -11.98216 -11.96145 -11.81630 -11.65162 -11.43391 -11.39994 -11.11480 -10.47438 -9.58862 -8.99454 -8.49251 -7.74871 -5.43109 0.30753 0.32471 1.47386 1.49978 1.57694 2.06989 2.30424 2.53082 2.71107 3.27490 3.32990 3.67725 3.69895 3.96981 4.04513 4.13636 4.21904 4.28985 4.36313 4.41754 4.46034 4.52350 4.60397 4.64551 4.70827 4.82158 4.88014 4.91755 4.96497 5.05340 5.14460 5.20441 5.24468 5.28631 5.37535 5.48199 5.65771 5.67817 5.69261 5.77295 5.91458 5.93362 6.44555 6.51410 7.21769 7.90610 8.44377 9.17041 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.015014 B = 0.004558 C = 0.003678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1864.444235 B = 6141.704375 C = 7611.190353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.132 4.132 3 C 0.144 3.856 4 N -0.602 5.602 5 C -0.267 4.267 6 H 0.053 0.947 7 C -0.030 4.030 8 N -0.915 5.915 9 Si 0.951 3.049 10 H -0.282 1.282 11 H -0.294 1.294 12 H -0.271 1.271 13 C 0.159 3.841 14 C -0.078 4.078 15 C -0.067 4.067 16 C -0.120 4.120 17 C -0.114 4.114 18 C 0.031 3.969 19 C 0.046 3.954 20 C -0.122 4.122 21 O -0.323 6.323 22 C 0.013 3.987 23 C 0.015 3.985 24 O -0.323 6.323 25 H 0.052 0.948 26 H 0.057 0.943 27 H 0.062 0.938 28 H 0.052 0.948 29 H 0.041 0.959 30 H 0.033 0.967 31 H 0.037 0.963 32 H 0.251 0.749 33 H 0.062 0.938 34 H 0.024 0.976 35 H 0.066 0.934 36 H 0.053 0.947 37 H 0.126 0.874 38 H 0.147 0.853 39 H 0.136 0.864 40 H 0.157 0.843 41 H 0.076 0.924 42 H 0.080 0.920 43 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.603 -8.211 -16.235 18.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.172 4.172 3 C 0.018 3.982 4 N -0.322 5.322 5 C -0.397 4.397 6 H 0.071 0.929 7 C -0.227 4.227 8 N -0.559 5.559 9 Si 0.780 3.220 10 H -0.209 1.209 11 H -0.221 1.221 12 H -0.195 1.195 13 C 0.032 3.968 14 C -0.118 4.118 15 C -0.068 4.068 16 C -0.139 4.139 17 C -0.132 4.132 18 C -0.014 4.014 19 C 0.001 3.999 20 C -0.141 4.141 21 O -0.238 6.238 22 C -0.062 4.062 23 C -0.060 4.060 24 O -0.238 6.238 25 H 0.071 0.929 26 H 0.076 0.924 27 H 0.081 0.919 28 H 0.071 0.929 29 H 0.060 0.940 30 H 0.051 0.949 31 H 0.055 0.945 32 H 0.060 0.940 33 H 0.080 0.920 34 H 0.042 0.958 35 H 0.084 0.916 36 H 0.072 0.928 37 H 0.144 0.856 38 H 0.165 0.835 39 H 0.154 0.846 40 H 0.174 0.826 41 H 0.094 0.906 42 H 0.098 0.902 43 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -0.505 -8.063 -16.295 18.188 hybrid contribution 0.799 0.116 0.702 1.070 sum 0.294 -7.947 -15.593 17.504 Atomic orbital electron populations 1.21665 0.94520 1.01850 1.01745 1.21995 0.96146 0.98381 1.00642 1.21039 0.83877 0.94868 0.98400 1.44023 1.00661 1.85507 1.02000 1.19174 1.06526 1.21893 0.92145 0.92943 1.25810 1.02362 0.94662 0.99896 1.70120 1.26118 1.18198 1.41452 0.85526 0.79667 0.76990 0.79859 1.20869 1.22105 1.19527 1.20758 0.97440 0.93255 0.85313 1.21028 0.98587 1.00207 0.91930 1.19823 0.93887 0.98283 0.94767 1.20948 0.93867 1.01262 0.97809 1.20556 1.00944 1.02791 0.88921 1.18879 0.89247 1.05857 0.87429 1.18862 0.89420 1.04345 0.87259 1.20362 1.00452 1.04323 0.88942 1.86262 1.41160 1.82928 1.13444 1.23982 0.94381 1.01093 0.86746 1.23962 0.94139 0.99700 0.88182 1.86262 1.40984 1.81239 1.15300 0.92925 0.92397 0.91899 0.92896 0.93972 0.94871 0.94512 0.93957 0.91980 0.95797 0.91561 0.92835 0.85648 0.83500 0.84566 0.82579 0.90605 0.90157 0.82662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.82 9.91 71.98 0.71 -3.10 16 2 C -0.13 -4.65 6.26 30.60 0.19 -4.46 16 3 C 0.14 6.12 5.71 86.38 0.49 6.61 16 4 N -0.60 -30.16 2.43 -702.01 -1.71 -31.86 16 5 C -0.27 -14.64 9.42 84.03 0.79 -13.85 16 6 H 0.05 2.89 7.92 -2.91 -0.02 2.87 16 7 C -0.03 -1.63 5.00 84.86 0.42 -1.21 16 8 N -0.92 -53.58 11.43 21.65 0.25 -53.33 16 9 Si 0.95 44.45 29.60 68.60 2.03 46.48 16 10 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 11 H -0.29 -13.81 7.11 99.48 0.71 -13.11 16 12 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 13 C 0.16 7.56 5.36 86.38 0.46 8.03 16 14 C -0.08 -3.17 5.63 29.85 0.17 -3.00 16 15 C -0.07 -2.45 5.13 -19.87 -0.10 -2.55 16 16 C -0.12 -4.27 9.69 22.26 0.22 -4.05 16 17 C -0.11 -3.59 9.96 22.37 0.22 -3.37 16 18 C 0.03 0.95 6.49 22.56 0.15 1.09 16 19 C 0.05 1.45 6.49 22.56 0.15 1.60 16 20 C -0.12 -4.13 9.61 22.37 0.22 -3.91 16 21 O -0.32 -8.68 10.42 -82.49 -0.86 -9.54 16 22 C 0.01 0.21 7.26 72.14 0.52 0.73 16 23 C 0.01 0.24 7.26 72.14 0.52 0.76 16 24 O -0.32 -8.38 10.42 -82.60 -0.86 -9.24 16 25 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 26 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 27 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 28 H 0.05 1.84 6.65 -2.38 -0.02 1.83 16 29 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 30 H 0.03 1.46 8.04 -2.39 -0.02 1.44 16 31 H 0.04 1.50 7.86 -2.39 -0.02 1.48 16 32 H 0.25 14.23 8.31 -92.71 -0.77 13.46 16 33 H 0.06 3.42 5.53 -2.39 -0.01 3.40 16 34 H 0.02 1.10 7.83 -2.38 -0.02 1.08 16 35 H 0.07 2.52 6.60 -2.39 -0.02 2.50 16 36 H 0.05 2.34 8.08 -2.39 -0.02 2.32 16 37 H 0.13 4.50 8.06 -2.91 -0.02 4.48 16 38 H 0.15 3.98 8.06 -2.91 -0.02 3.96 16 39 H 0.14 4.30 8.06 -2.91 -0.02 4.28 16 40 H 0.16 1.35 8.14 -2.39 -0.02 1.33 16 41 H 0.08 1.28 8.14 -2.38 -0.02 1.26 16 42 H 0.08 1.21 8.14 -2.38 -0.02 1.19 16 43 H 0.16 1.26 8.14 -2.39 -0.02 1.24 16 Total: -1.00 -65.96 350.96 4.97 -60.99 By element: Atomic # 1 Polarization: 16.19 SS G_CDS: 0.98 Total: 17.17 kcal Atomic # 6 Polarization: -25.81 SS G_CDS: 5.14 Total: -20.67 kcal Atomic # 7 Polarization: -83.74 SS G_CDS: -1.46 Total: -85.20 kcal Atomic # 8 Polarization: -17.06 SS G_CDS: -1.72 Total: -18.78 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.48 kcal Total: -65.96 4.97 -60.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360016918.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.502 kcal (2) G-P(sol) polarization free energy of solvation -65.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds