Wall clock time and date at job start Tue Mar 31 2020 06:52:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.47213 * 2 1 4 4 O 1.42897 * 109.46940 * 180.02562 * 3 2 1 5 5 C 1.52997 * 109.47018 * 120.00235 * 2 1 3 6 6 N 1.46496 * 109.47217 * 299.99914 * 5 2 1 7 7 C 1.34777 * 119.99987 * 180.02562 * 6 5 2 8 8 O 1.21274 * 120.00128 * 359.97438 * 7 6 5 9 9 C 1.50706 * 119.99716 * 179.97438 * 7 6 5 10 10 C 1.53007 * 109.46826 * 180.02562 * 9 7 6 11 11 C 1.50696 * 109.46828 * 180.02562 * 10 9 7 12 12 H 1.08005 * 120.00170 * 359.97438 * 11 10 9 13 13 C 1.37875 * 120.00072 * 180.02562 * 11 10 9 14 14 N 1.31514 * 120.00493 * 180.02562 * 13 11 10 15 15 Si 1.86803 * 119.99895 * 359.97438 * 13 11 10 16 16 H 1.48506 * 109.46833 * 90.00501 * 15 13 11 17 17 H 1.48500 * 109.47514 * 210.00455 * 15 13 11 18 18 H 1.48504 * 109.47013 * 330.00788 * 15 13 11 19 19 C 1.50706 * 109.46922 * 239.99833 * 2 1 3 20 20 C 1.38237 * 119.99744 * 60.00687 * 19 2 1 21 21 C 1.38235 * 119.99712 * 180.02562 * 20 19 2 22 22 C 1.38234 * 120.00220 * 359.94731 * 21 20 19 23 23 C 1.38233 * 120.00037 * 0.28719 * 22 21 20 24 24 C 1.38234 * 120.00223 * 240.01897 * 19 2 1 25 25 H 1.08996 * 109.47165 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46868 * 299.99909 * 1 2 3 27 27 H 1.09004 * 109.46872 * 59.99552 * 1 2 3 28 28 H 1.08995 * 109.47023 * 300.00148 * 3 2 1 29 29 H 1.09001 * 109.46677 * 59.99968 * 3 2 1 30 30 H 0.96697 * 114.00029 * 180.02562 * 4 3 2 31 31 H 1.09001 * 109.47464 * 60.00224 * 5 2 1 32 32 H 1.09000 * 109.47424 * 179.97438 * 5 2 1 33 33 H 0.97005 * 119.99840 * 0.02562 * 6 5 2 34 34 H 1.08996 * 109.47658 * 300.00156 * 9 7 6 35 35 H 1.09004 * 109.46871 * 60.00670 * 9 7 6 36 36 H 1.09004 * 109.46930 * 300.00176 * 10 9 7 37 37 H 1.08996 * 109.47038 * 60.00350 * 10 9 7 38 38 H 0.96998 * 120.00219 * 179.97438 * 14 13 11 39 39 H 1.08005 * 120.00088 * 359.97438 * 20 19 2 40 40 H 1.07999 * 119.99770 * 179.97438 * 21 20 19 41 41 H 1.08002 * 119.99744 * 180.02562 * 22 21 20 42 42 H 1.07998 * 120.00395 * 179.72811 * 23 22 21 43 43 H 1.07998 * 119.99975 * 0.02562 * 24 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 3.4690 1.4424 -0.0006 5 6 2.0400 -0.7213 1.2492 6 7 1.5517 -0.0308 2.4454 7 6 1.8777 -0.4910 3.6694 8 8 2.5749 -1.4770 3.7807 9 6 1.3758 0.2198 4.8999 10 6 1.8868 -0.5009 6.1492 11 6 1.3844 0.2095 7.3796 12 1 0.7632 1.0874 7.2805 13 6 1.7186 -0.2607 8.6319 14 7 1.2798 0.3588 9.7057 15 14 2.7937 -1.7788 8.8033 16 1 4.2212 -1.3719 8.8476 17 1 2.4438 -2.4943 10.0566 18 1 2.5708 -2.6769 7.6418 19 6 2.0323 -0.7105 -1.2305 20 6 1.6984 -0.2381 -2.4860 21 6 2.1587 -0.8901 -3.6147 22 6 2.9538 -2.0138 -3.4879 23 6 3.2837 -2.4890 -2.2324 24 6 2.8267 -1.8346 -1.1037 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.6767 1.9563 -0.8899 29 1 1.6767 1.9563 0.8900 30 1 3.8624 2.3258 -0.0002 31 1 1.6767 -1.7490 1.2492 32 1 3.1300 -0.7217 1.2490 33 1 0.9937 0.7577 2.3564 34 1 1.7391 1.2474 4.8996 35 1 0.2858 0.2197 4.9003 36 1 1.5237 -1.5287 6.1497 37 1 2.9767 -0.5005 6.1486 38 1 1.5147 0.0278 10.5867 39 1 1.0773 0.6399 -2.5851 40 1 1.8975 -0.5213 -4.5956 41 1 3.3137 -2.5229 -4.3698 42 1 3.9012 -3.3694 -2.1333 43 1 3.0871 -2.2040 -0.1228 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360612639.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:03 Heat of formation + Delta-G solvation = -75.330451 kcal Electronic energy + Delta-G solvation = -23012.453129 eV Core-core repulsion = 19636.030595 eV Total energy + Delta-G solvation = -3376.422534 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.47289 -39.02703 -37.51347 -35.48694 -33.45062 -33.18690 -31.32327 -31.13046 -29.78972 -27.34358 -26.40917 -25.41057 -23.07408 -22.41220 -21.14705 -19.83330 -19.40071 -17.58886 -17.48430 -17.00750 -16.10483 -15.78380 -15.50214 -15.15223 -14.86928 -14.59449 -14.42165 -14.05792 -13.71497 -13.53042 -13.31999 -13.07932 -12.82054 -12.56162 -12.53216 -12.29654 -12.17122 -11.66303 -11.48825 -11.39026 -11.03060 -10.93195 -10.68649 -10.22826 -10.12600 -10.01738 -9.76082 -9.21158 -9.13863 -9.09788 -8.88829 -8.78601 -8.48804 -6.01460 -4.00003 1.17613 1.23154 3.19071 3.39787 3.45392 3.46975 3.57753 3.59255 3.92437 4.25005 4.51976 4.52878 4.66839 4.79826 4.80307 4.92621 5.01287 5.14272 5.18375 5.25293 5.34226 5.35009 5.40873 5.49112 5.61616 5.71713 5.82303 5.84550 5.85304 5.98918 6.10887 6.12733 6.27344 6.33661 6.42938 6.67167 6.72606 6.81436 7.39670 7.40341 7.46518 7.78481 7.83514 8.52162 8.71215 9.01656 9.61865 11.11360 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.029968 B = 0.003032 C = 0.002893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.097744 B = 9233.649881 C = 9676.728268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.033 4.033 3 C 0.089 3.911 4 O -0.562 6.562 5 C 0.132 3.868 6 N -0.739 5.739 7 C 0.510 3.490 8 O -0.540 6.540 9 C -0.122 4.122 10 C 0.001 3.999 11 C -0.524 4.524 12 H 0.072 0.928 13 C 0.068 3.932 14 N -0.904 5.904 15 Si 0.877 3.123 16 H -0.277 1.277 17 H -0.289 1.289 18 H -0.261 1.261 19 C -0.054 4.054 20 C -0.115 4.115 21 C -0.121 4.121 22 C -0.127 4.127 23 C -0.116 4.116 24 C -0.113 4.113 25 H 0.068 0.932 26 H 0.065 0.935 27 H 0.062 0.938 28 H 0.048 0.952 29 H 0.051 0.949 30 H 0.379 0.621 31 H 0.065 0.935 32 H 0.077 0.923 33 H 0.394 0.606 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.023 0.977 37 H 0.019 0.981 38 H 0.263 0.737 39 H 0.118 0.882 40 H 0.119 0.881 41 H 0.118 0.882 42 H 0.121 0.879 43 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.455 1.597 -28.926 28.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.033 4.033 3 C 0.011 3.989 4 O -0.367 6.367 5 C 0.008 3.992 6 N -0.394 5.394 7 C 0.298 3.702 8 O -0.416 6.416 9 C -0.162 4.162 10 C -0.036 4.036 11 C -0.562 4.562 12 H 0.090 0.910 13 C -0.133 4.133 14 N -0.543 5.543 15 Si 0.705 3.295 16 H -0.202 1.202 17 H -0.215 1.215 18 H -0.185 1.185 19 C -0.054 4.054 20 C -0.133 4.133 21 C -0.139 4.139 22 C -0.145 4.145 23 C -0.134 4.134 24 C -0.131 4.131 25 H 0.087 0.913 26 H 0.084 0.916 27 H 0.081 0.919 28 H 0.066 0.934 29 H 0.069 0.931 30 H 0.225 0.775 31 H 0.084 0.916 32 H 0.095 0.905 33 H 0.229 0.771 34 H 0.102 0.898 35 H 0.103 0.897 36 H 0.042 0.958 37 H 0.037 0.963 38 H 0.073 0.927 39 H 0.136 0.864 40 H 0.137 0.863 41 H 0.136 0.864 42 H 0.139 0.861 43 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -0.038 0.208 -28.634 28.634 hybrid contribution 0.360 0.311 0.086 0.483 sum 0.322 0.519 -28.547 28.554 Atomic orbital electron populations 1.21872 0.92184 1.03375 1.02377 1.19787 0.96007 0.94368 0.93174 1.22181 0.81947 0.94990 0.99805 1.86534 1.18966 1.33537 1.97614 1.21318 0.99944 0.95433 0.82482 1.46188 1.55019 1.32500 1.05698 1.21492 0.79469 0.84572 0.84645 1.90649 1.37549 1.26565 1.86858 1.21660 1.01812 1.00403 0.92300 1.19365 0.96660 0.96209 0.91410 1.21118 1.32384 1.13524 0.89180 0.90972 1.24973 0.95642 0.96860 0.95797 1.69911 1.45891 1.40637 0.97892 0.86795 0.81081 0.83976 0.77699 1.20243 1.21474 1.18502 1.19457 0.97270 0.95304 0.93400 1.20874 1.00583 0.99950 0.91906 1.21063 0.98384 0.96161 0.98260 1.21126 0.98967 0.97010 0.97390 1.21162 0.99860 0.99892 0.92531 1.21237 0.97208 0.95373 0.99277 0.91269 0.91592 0.91889 0.93395 0.93095 0.77469 0.91633 0.90517 0.77088 0.89759 0.89695 0.95831 0.96275 0.92740 0.86436 0.86308 0.86352 0.86094 0.85448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.10 8.11 37.16 0.30 -0.80 16 2 C -0.03 -0.31 0.45 -155.66 -0.07 -0.38 16 3 C 0.09 0.74 5.56 37.16 0.21 0.95 16 4 O -0.56 -5.58 12.61 -35.23 -0.44 -6.02 16 5 C 0.13 1.68 3.08 -4.05 -0.01 1.67 16 6 N -0.74 -9.99 4.96 -60.30 -0.30 -10.29 16 7 C 0.51 9.45 7.83 -10.98 -0.09 9.36 16 8 O -0.54 -12.29 15.98 5.56 0.09 -12.20 16 9 C -0.12 -2.38 5.64 -27.88 -0.16 -2.54 16 10 C 0.00 0.04 3.33 -27.88 -0.09 -0.06 16 11 C -0.52 -15.11 9.66 -34.44 -0.33 -15.44 16 12 H 0.07 2.16 7.99 -52.48 -0.42 1.74 16 13 C 0.07 2.04 5.47 -17.82 -0.10 1.95 16 14 N -0.90 -28.20 13.96 55.43 0.77 -27.43 16 15 Si 0.88 22.85 27.47 -169.99 -4.67 18.18 16 16 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 17 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 18 H -0.26 -6.77 6.54 56.52 0.37 -6.41 16 19 C -0.05 -0.55 4.41 -104.62 -0.46 -1.01 16 20 C -0.12 -1.02 8.71 -39.58 -0.34 -1.36 16 21 C -0.12 -1.01 10.05 -39.58 -0.40 -1.41 16 22 C -0.13 -1.11 10.05 -39.58 -0.40 -1.50 16 23 C -0.12 -1.14 10.05 -39.58 -0.40 -1.53 16 24 C -0.11 -1.25 8.98 -39.58 -0.36 -1.60 16 25 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.07 0.47 6.86 -51.93 -0.36 0.12 16 27 H 0.06 0.39 7.39 -51.93 -0.38 0.01 16 28 H 0.05 0.32 7.39 -51.93 -0.38 -0.06 16 29 H 0.05 0.39 6.86 -51.93 -0.36 0.03 16 30 H 0.38 2.22 9.12 45.56 0.42 2.63 16 31 H 0.07 0.89 7.51 -51.93 -0.39 0.50 16 32 H 0.08 1.15 7.05 -51.93 -0.37 0.78 16 33 H 0.39 4.15 6.16 -40.82 -0.25 3.90 16 34 H 0.08 1.52 8.14 -51.93 -0.42 1.09 16 35 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 36 H 0.02 0.62 7.16 -51.93 -0.37 0.25 16 37 H 0.02 0.50 7.53 -51.93 -0.39 0.11 16 38 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 39 H 0.12 0.82 7.10 -52.48 -0.37 0.45 16 40 H 0.12 0.74 8.06 -52.49 -0.42 0.31 16 41 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 42 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 43 H 0.13 1.47 5.89 -52.49 -0.31 1.16 16 LS Contribution 348.03 15.07 5.24 5.24 Total: -1.00 -36.09 348.03 -7.64 -43.73 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: -5.64 Total: 2.50 kcal Atomic # 6 Polarization: -11.02 SS G_CDS: -2.69 Total: -13.71 kcal Atomic # 7 Polarization: -38.19 SS G_CDS: 0.47 Total: -37.72 kcal Atomic # 8 Polarization: -17.87 SS G_CDS: -0.36 Total: -18.22 kcal Atomic # 14 Polarization: 22.85 SS G_CDS: -4.67 Total: 18.18 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -36.09 -7.64 -43.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360612639.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.600 kcal (2) G-P(sol) polarization free energy of solvation -36.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds