Wall clock time and date at job start Tue Mar 31 2020 06:52:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.47213 * 2 1 4 4 O 1.42897 * 109.46940 * 180.02562 * 3 2 1 5 5 C 1.52997 * 109.47018 * 120.00235 * 2 1 3 6 6 N 1.46496 * 109.47217 * 299.99914 * 5 2 1 7 7 C 1.34777 * 119.99987 * 180.02562 * 6 5 2 8 8 O 1.21274 * 120.00128 * 359.97438 * 7 6 5 9 9 C 1.50706 * 119.99716 * 179.97438 * 7 6 5 10 10 C 1.53007 * 109.46826 * 180.02562 * 9 7 6 11 11 C 1.50696 * 109.46828 * 180.02562 * 10 9 7 12 12 H 1.08005 * 120.00170 * 359.97438 * 11 10 9 13 13 C 1.37875 * 120.00072 * 180.02562 * 11 10 9 14 14 N 1.31514 * 120.00493 * 180.02562 * 13 11 10 15 15 Si 1.86803 * 119.99895 * 359.97438 * 13 11 10 16 16 H 1.48506 * 109.46833 * 90.00501 * 15 13 11 17 17 H 1.48500 * 109.47514 * 210.00455 * 15 13 11 18 18 H 1.48504 * 109.47013 * 330.00788 * 15 13 11 19 19 C 1.50706 * 109.46922 * 239.99833 * 2 1 3 20 20 C 1.38237 * 119.99744 * 60.00687 * 19 2 1 21 21 C 1.38235 * 119.99712 * 180.02562 * 20 19 2 22 22 C 1.38234 * 120.00220 * 359.94731 * 21 20 19 23 23 C 1.38233 * 120.00037 * 0.28719 * 22 21 20 24 24 C 1.38234 * 120.00223 * 240.01897 * 19 2 1 25 25 H 1.08996 * 109.47165 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46868 * 299.99909 * 1 2 3 27 27 H 1.09004 * 109.46872 * 59.99552 * 1 2 3 28 28 H 1.08995 * 109.47023 * 300.00148 * 3 2 1 29 29 H 1.09001 * 109.46677 * 59.99968 * 3 2 1 30 30 H 0.96697 * 114.00029 * 180.02562 * 4 3 2 31 31 H 1.09001 * 109.47464 * 60.00224 * 5 2 1 32 32 H 1.09000 * 109.47424 * 179.97438 * 5 2 1 33 33 H 0.97005 * 119.99840 * 0.02562 * 6 5 2 34 34 H 1.08996 * 109.47658 * 300.00156 * 9 7 6 35 35 H 1.09004 * 109.46871 * 60.00670 * 9 7 6 36 36 H 1.09004 * 109.46930 * 300.00176 * 10 9 7 37 37 H 1.08996 * 109.47038 * 60.00350 * 10 9 7 38 38 H 0.96998 * 120.00219 * 179.97438 * 14 13 11 39 39 H 1.08005 * 120.00088 * 359.97438 * 20 19 2 40 40 H 1.07999 * 119.99770 * 179.97438 * 21 20 19 41 41 H 1.08002 * 119.99744 * 180.02562 * 22 21 20 42 42 H 1.07998 * 120.00395 * 179.72811 * 23 22 21 43 43 H 1.07998 * 119.99975 * 0.02562 * 24 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 3.4690 1.4424 -0.0006 5 6 2.0400 -0.7213 1.2492 6 7 1.5517 -0.0308 2.4454 7 6 1.8777 -0.4910 3.6694 8 8 2.5749 -1.4770 3.7807 9 6 1.3758 0.2198 4.8999 10 6 1.8868 -0.5009 6.1492 11 6 1.3844 0.2095 7.3796 12 1 0.7632 1.0874 7.2805 13 6 1.7186 -0.2607 8.6319 14 7 1.2798 0.3588 9.7057 15 14 2.7937 -1.7788 8.8033 16 1 4.2212 -1.3719 8.8476 17 1 2.4438 -2.4943 10.0566 18 1 2.5708 -2.6769 7.6418 19 6 2.0323 -0.7105 -1.2305 20 6 1.6984 -0.2381 -2.4860 21 6 2.1587 -0.8901 -3.6147 22 6 2.9538 -2.0138 -3.4879 23 6 3.2837 -2.4890 -2.2324 24 6 2.8267 -1.8346 -1.1037 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.6767 1.9563 -0.8899 29 1 1.6767 1.9563 0.8900 30 1 3.8624 2.3258 -0.0002 31 1 1.6767 -1.7490 1.2492 32 1 3.1300 -0.7217 1.2490 33 1 0.9937 0.7577 2.3564 34 1 1.7391 1.2474 4.8996 35 1 0.2858 0.2197 4.9003 36 1 1.5237 -1.5287 6.1497 37 1 2.9767 -0.5005 6.1486 38 1 1.5147 0.0278 10.5867 39 1 1.0773 0.6399 -2.5851 40 1 1.8975 -0.5213 -4.5956 41 1 3.3137 -2.5229 -4.3698 42 1 3.9012 -3.3694 -2.1333 43 1 3.0871 -2.2040 -0.1228 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360612639.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:02 Heat of formation + Delta-G solvation = -101.414938 kcal Electronic energy + Delta-G solvation = -23013.584238 eV Core-core repulsion = 19636.030595 eV Total energy + Delta-G solvation = -3377.553642 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.37042 -40.28874 -38.31315 -36.38398 -35.53608 -34.31931 -33.24999 -31.90233 -30.52287 -28.76843 -27.19762 -26.77301 -23.96899 -23.30428 -22.71345 -21.30870 -20.24445 -19.24283 -18.27231 -18.11719 -17.48573 -16.90248 -16.74587 -16.25159 -16.05499 -15.78310 -15.43938 -15.27549 -14.86853 -14.61455 -14.56495 -14.18357 -14.12033 -13.89801 -13.42794 -13.40150 -13.16856 -12.91238 -12.83991 -12.47635 -12.23347 -12.10001 -11.97095 -11.77937 -11.72135 -11.40478 -11.40023 -10.86556 -10.78739 -10.78354 -10.08423 -9.77538 -9.57393 -8.31855 -6.34302 0.49023 0.53090 1.32402 1.34387 1.49737 1.69919 2.22963 2.34615 2.90276 3.03884 3.27580 3.49368 3.81587 3.90848 4.01642 4.11799 4.16576 4.29469 4.32716 4.39854 4.48979 4.55185 4.57459 4.61819 4.67789 4.71951 4.85952 4.89517 4.98855 5.02721 5.15137 5.17949 5.27185 5.32772 5.44531 5.45663 5.60955 5.62493 5.66148 5.71331 6.14667 6.23392 6.57418 6.71941 6.93320 7.30932 7.31663 8.83694 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.029968 B = 0.003032 C = 0.002893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.097744 B = 9233.649881 C = 9676.728268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.026 4.026 3 C 0.086 3.914 4 O -0.588 6.588 5 C 0.137 3.863 6 N -0.713 5.713 7 C 0.513 3.487 8 O -0.589 6.589 9 C -0.115 4.115 10 C 0.004 3.996 11 C -0.527 4.527 12 H 0.053 0.947 13 C 0.014 3.986 14 N -0.943 5.943 15 Si 0.936 3.064 16 H -0.269 1.269 17 H -0.277 1.277 18 H -0.263 1.263 19 C -0.064 4.064 20 C -0.117 4.117 21 C -0.122 4.122 22 C -0.133 4.133 23 C -0.130 4.130 24 C -0.141 4.141 25 H 0.058 0.942 26 H 0.074 0.926 27 H 0.086 0.914 28 H 0.073 0.927 29 H 0.061 0.939 30 H 0.394 0.606 31 H 0.052 0.948 32 H 0.051 0.949 33 H 0.413 0.587 34 H 0.103 0.897 35 H 0.105 0.895 36 H 0.009 0.991 37 H 0.006 0.994 38 H 0.267 0.733 39 H 0.142 0.858 40 H 0.146 0.854 41 H 0.139 0.861 42 H 0.127 0.873 43 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.084 2.513 -31.426 31.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.027 4.027 3 C 0.008 3.992 4 O -0.396 6.396 5 C 0.014 3.986 6 N -0.367 5.367 7 C 0.301 3.699 8 O -0.469 6.469 9 C -0.155 4.155 10 C -0.034 4.034 11 C -0.565 4.565 12 H 0.071 0.929 13 C -0.183 4.183 14 N -0.583 5.583 15 Si 0.761 3.239 16 H -0.195 1.195 17 H -0.203 1.203 18 H -0.188 1.188 19 C -0.064 4.064 20 C -0.135 4.135 21 C -0.140 4.140 22 C -0.151 4.151 23 C -0.148 4.148 24 C -0.159 4.159 25 H 0.077 0.923 26 H 0.093 0.907 27 H 0.105 0.895 28 H 0.091 0.909 29 H 0.079 0.921 30 H 0.244 0.756 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.251 0.749 34 H 0.122 0.878 35 H 0.123 0.877 36 H 0.027 0.973 37 H 0.025 0.975 38 H 0.076 0.924 39 H 0.160 0.840 40 H 0.163 0.837 41 H 0.157 0.843 42 H 0.145 0.855 43 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -0.691 1.176 -31.171 31.201 hybrid contribution 0.537 0.078 0.792 0.959 sum -0.154 1.253 -30.380 30.406 Atomic orbital electron populations 1.21894 0.90558 1.03253 1.03991 1.19774 0.97165 0.94777 0.90948 1.22301 0.81358 0.94048 1.01476 1.86505 1.20017 1.35298 1.97740 1.21277 0.98487 0.95342 0.83526 1.45885 1.53810 1.32467 1.04518 1.21248 0.79019 0.83870 0.85759 1.90637 1.39953 1.28714 1.87611 1.21495 1.02954 1.00611 0.90410 1.19224 0.95770 0.95648 0.92728 1.21423 1.31554 1.12926 0.90606 0.92910 1.25777 0.97090 0.99743 0.95735 1.70014 1.47437 1.42358 0.98515 0.85860 0.79647 0.80576 0.77802 1.19454 1.20272 1.18786 1.19578 0.97369 0.95130 0.94353 1.21145 1.00564 1.00596 0.91220 1.21449 0.97461 0.95632 0.99431 1.21433 0.98819 0.97343 0.97494 1.21351 1.00235 1.00336 0.92902 1.21267 0.98941 0.96781 0.98943 0.92305 0.90733 0.89528 0.90864 0.92140 0.75648 0.93017 0.93025 0.74869 0.87842 0.87675 0.97305 0.97536 0.92372 0.84031 0.83659 0.84268 0.85453 0.87410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.81 8.11 71.98 0.58 -1.23 16 2 C -0.03 -0.45 0.45 -52.93 -0.02 -0.48 16 3 C 0.09 1.20 5.56 71.98 0.40 1.60 16 4 O -0.59 -10.79 12.61 -148.98 -1.88 -12.67 16 5 C 0.14 3.50 3.08 86.38 0.27 3.77 16 6 N -0.71 -18.42 4.96 -463.07 -2.30 -20.72 16 7 C 0.51 18.75 7.83 87.66 0.69 19.43 16 8 O -0.59 -27.26 15.98 -3.01 -0.05 -27.31 16 9 C -0.11 -4.36 5.64 29.85 0.17 -4.19 16 10 C 0.00 0.22 3.33 29.85 0.10 0.32 16 11 C -0.53 -30.58 9.66 25.60 0.25 -30.33 16 12 H 0.05 3.19 7.99 -2.91 -0.02 3.17 16 13 C 0.01 0.86 5.47 84.65 0.46 1.32 16 14 N -0.94 -59.25 13.96 21.45 0.30 -58.95 16 15 Si 0.94 47.46 27.47 68.60 1.88 49.35 16 16 H -0.27 -13.24 7.11 99.48 0.71 -12.54 16 17 H -0.28 -13.45 7.11 99.48 0.71 -12.74 16 18 H -0.26 -13.37 6.54 99.48 0.65 -12.72 16 19 C -0.06 -1.22 4.41 -19.86 -0.09 -1.31 16 20 C -0.12 -1.76 8.71 22.27 0.19 -1.56 16 21 C -0.12 -1.71 10.05 22.27 0.22 -1.49 16 22 C -0.13 -2.09 10.05 22.27 0.22 -1.87 16 23 C -0.13 -2.54 10.05 22.27 0.22 -2.32 16 24 C -0.14 -3.20 8.98 22.27 0.20 -3.00 16 25 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 26 H 0.07 0.83 6.86 -2.39 -0.02 0.81 16 27 H 0.09 0.74 7.39 -2.38 -0.02 0.72 16 28 H 0.07 0.68 7.39 -2.39 -0.02 0.67 16 29 H 0.06 0.72 6.86 -2.39 -0.02 0.70 16 30 H 0.39 3.93 9.12 -74.06 -0.68 3.25 16 31 H 0.05 1.47 7.51 -2.39 -0.02 1.45 16 32 H 0.05 1.61 7.05 -2.39 -0.02 1.59 16 33 H 0.41 7.62 6.16 -92.70 -0.57 7.05 16 34 H 0.10 3.53 8.14 -2.39 -0.02 3.51 16 35 H 0.11 3.56 8.14 -2.38 -0.02 3.54 16 36 H 0.01 0.46 7.16 -2.38 -0.02 0.44 16 37 H 0.01 0.33 7.53 -2.39 -0.02 0.31 16 38 H 0.27 15.71 8.31 -92.71 -0.77 14.94 16 39 H 0.14 1.37 7.10 -2.91 -0.02 1.35 16 40 H 0.15 1.23 8.06 -2.91 -0.02 1.20 16 41 H 0.14 1.52 8.06 -2.91 -0.02 1.50 16 42 H 0.13 2.14 8.06 -2.91 -0.02 2.11 16 43 H 0.11 2.75 5.89 -2.91 -0.02 2.73 16 Total: -1.00 -79.24 348.03 1.55 -77.69 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: -0.28 Total: 13.93 kcal Atomic # 6 Polarization: -25.20 SS G_CDS: 3.87 Total: -21.33 kcal Atomic # 7 Polarization: -77.67 SS G_CDS: -2.00 Total: -79.67 kcal Atomic # 8 Polarization: -38.05 SS G_CDS: -1.93 Total: -39.97 kcal Atomic # 14 Polarization: 47.46 SS G_CDS: 1.88 Total: 49.35 kcal Total: -79.24 1.55 -77.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360612639.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.722 kcal (2) G-P(sol) polarization free energy of solvation -79.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds