Wall clock time and date at job start Tue Mar 31 2020 06:52:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.46623 * 2 1 4 4 O 1.42896 * 109.46890 * 179.97438 * 3 2 1 5 5 C 1.52997 * 109.47317 * 240.00180 * 2 1 3 6 6 N 1.46505 * 109.47212 * 59.99649 * 5 2 1 7 7 C 1.34771 * 119.99622 * 179.97438 * 6 5 2 8 8 O 1.21280 * 120.00597 * 0.02562 * 7 6 5 9 9 C 1.50701 * 119.99622 * 179.97438 * 7 6 5 10 10 C 1.52997 * 109.47212 * 180.02562 * 9 7 6 11 11 C 1.50697 * 109.47466 * 180.02562 * 10 9 7 12 12 H 1.08006 * 119.99920 * 359.97438 * 11 10 9 13 13 C 1.37876 * 120.00428 * 180.02562 * 11 10 9 14 14 N 1.31520 * 120.00162 * 179.97438 * 13 11 10 15 15 Si 1.86798 * 119.99868 * 359.97438 * 13 11 10 16 16 H 1.48504 * 109.47023 * 90.00014 * 15 13 11 17 17 H 1.48502 * 109.47442 * 209.99974 * 15 13 11 18 18 H 1.48498 * 109.47139 * 330.00202 * 15 13 11 19 19 C 1.50697 * 109.46961 * 119.99739 * 2 1 3 20 20 C 1.38231 * 119.99893 * 119.73425 * 19 2 1 21 21 C 1.38240 * 120.00319 * 179.80883 * 20 19 2 22 22 C 1.38232 * 119.99491 * 0.39439 * 21 20 19 23 23 C 1.38235 * 120.00450 * 359.85656 * 22 21 20 24 24 C 1.38234 * 119.99790 * 359.95488 * 23 22 21 25 25 H 1.09002 * 109.46716 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47486 * 299.99829 * 1 2 3 27 27 H 1.09001 * 109.47362 * 60.00551 * 1 2 3 28 28 H 1.08993 * 109.46955 * 300.00075 * 3 2 1 29 29 H 1.09000 * 109.47050 * 59.99904 * 3 2 1 30 30 H 0.96698 * 114.00134 * 180.02562 * 4 3 2 31 31 H 1.09002 * 109.47153 * 299.99641 * 5 2 1 32 32 H 1.09001 * 109.46832 * 179.97438 * 5 2 1 33 33 H 0.96996 * 119.99606 * 0.02562 * 6 5 2 34 34 H 1.09001 * 109.47380 * 300.00190 * 9 7 6 35 35 H 1.09002 * 109.47060 * 60.00278 * 9 7 6 36 36 H 1.09001 * 109.47289 * 299.99918 * 10 9 7 37 37 H 1.09002 * 109.47153 * 60.00002 * 10 9 7 38 38 H 0.97006 * 119.99550 * 179.97438 * 14 13 11 39 39 H 1.08005 * 120.00050 * 359.97438 * 20 19 2 40 40 H 1.07994 * 120.00336 * 180.22735 * 21 20 19 41 41 H 1.08007 * 119.99667 * 179.83216 * 22 21 20 42 42 H 1.07993 * 120.00477 * 179.97438 * 23 22 21 43 43 H 1.08001 * 120.00135 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 8 3.4688 1.4427 0.0006 5 6 2.0400 -0.7212 -1.2492 6 7 1.5516 -0.0306 -2.4454 7 6 1.8777 -0.4908 -3.6695 8 8 2.5751 -1.4768 -3.7808 9 6 1.3749 0.2193 -4.8999 10 6 1.8850 -0.5019 -6.1492 11 6 1.3828 0.2085 -7.3796 12 1 0.7614 1.0863 -7.2806 13 6 1.7155 -0.2628 -8.6319 14 7 1.2767 0.3569 -9.7058 15 14 2.7896 -1.7814 -8.8033 16 1 1.9312 -2.9924 -8.8482 17 1 3.5812 -1.6891 -10.0564 18 1 3.7103 -1.8702 -7.6416 19 6 2.0323 -0.7103 1.2305 20 6 2.8224 -1.8374 1.1037 21 6 3.2865 -2.4868 2.2324 22 6 2.9536 -2.0138 3.4878 23 6 2.1591 -0.8897 3.6147 24 6 1.6983 -0.2380 2.4860 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5137 -0.8900 28 1 1.6765 1.9563 -0.8899 29 1 1.6765 1.9564 0.8900 30 1 3.8621 2.3261 0.0010 31 1 1.6768 -1.7489 -1.2492 32 1 3.1300 -0.7207 -1.2494 33 1 0.9943 0.7582 -2.3564 34 1 0.2849 0.2184 -4.9000 35 1 1.7374 1.2472 -4.8999 36 1 2.9750 -0.5013 -6.1494 37 1 1.5222 -1.5297 -6.1490 38 1 1.5112 0.0255 -10.5868 39 1 3.0795 -2.2092 0.1228 40 1 3.9069 -3.3653 2.1333 41 1 3.3139 -2.5227 4.3697 42 1 1.8987 -0.5203 4.5955 43 1 1.0773 0.6400 2.5851 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360612640.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:06 Heat of formation + Delta-G solvation = -75.340213 kcal Electronic energy + Delta-G solvation = -23012.431278 eV Core-core repulsion = 19636.008321 eV Total energy + Delta-G solvation = -3376.422957 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.47326 -39.02667 -37.51345 -35.48702 -33.45027 -33.18746 -31.32292 -31.13026 -29.78960 -27.34347 -26.40934 -25.41058 -23.07444 -22.41252 -21.14713 -19.83338 -19.40104 -17.58884 -17.48455 -17.00759 -16.10530 -15.78101 -15.50425 -15.15093 -14.86810 -14.59357 -14.42429 -14.06126 -13.71139 -13.53073 -13.32420 -13.07290 -12.82559 -12.55534 -12.53612 -12.30047 -12.16700 -11.65865 -11.50037 -11.38392 -11.03139 -10.93217 -10.68536 -10.22767 -10.12829 -10.01585 -9.76035 -9.21146 -9.13836 -9.09796 -8.88832 -8.78643 -8.48768 -6.01489 -3.99993 1.17622 1.23122 3.19054 3.39706 3.45367 3.46955 3.57899 3.59229 3.92437 4.25014 4.51953 4.52900 4.66852 4.79814 4.80315 4.92595 5.01284 5.14240 5.18363 5.25292 5.34208 5.35009 5.40874 5.49036 5.61618 5.71742 5.82308 5.84497 5.85288 5.98898 6.10851 6.12738 6.27330 6.33659 6.42908 6.67111 6.72611 6.81424 7.39523 7.40363 7.46654 7.78494 7.83531 8.52160 8.71208 9.01647 9.61854 11.11322 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.029968 B = 0.003032 C = 0.002893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.112505 B = 9233.743033 C = 9676.915581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.033 4.033 3 C 0.089 3.911 4 O -0.562 6.562 5 C 0.132 3.868 6 N -0.739 5.739 7 C 0.510 3.490 8 O -0.540 6.540 9 C -0.122 4.122 10 C 0.001 3.999 11 C -0.524 4.524 12 H 0.072 0.928 13 C 0.068 3.932 14 N -0.904 5.904 15 Si 0.877 3.123 16 H -0.277 1.277 17 H -0.289 1.289 18 H -0.261 1.261 19 C -0.054 4.054 20 C -0.113 4.113 21 C -0.116 4.116 22 C -0.127 4.127 23 C -0.121 4.121 24 C -0.115 4.115 25 H 0.068 0.932 26 H 0.062 0.938 27 H 0.065 0.935 28 H 0.051 0.949 29 H 0.048 0.952 30 H 0.379 0.621 31 H 0.066 0.934 32 H 0.077 0.923 33 H 0.394 0.606 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.023 0.977 37 H 0.019 0.981 38 H 0.263 0.737 39 H 0.128 0.872 40 H 0.121 0.879 41 H 0.118 0.882 42 H 0.119 0.881 43 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.391 1.640 28.930 28.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.033 4.033 3 C 0.011 3.989 4 O -0.367 6.367 5 C 0.008 3.992 6 N -0.394 5.394 7 C 0.298 3.702 8 O -0.416 6.416 9 C -0.162 4.162 10 C -0.036 4.036 11 C -0.562 4.562 12 H 0.090 0.910 13 C -0.133 4.133 14 N -0.543 5.543 15 Si 0.705 3.295 16 H -0.203 1.203 17 H -0.215 1.215 18 H -0.185 1.185 19 C -0.054 4.054 20 C -0.131 4.131 21 C -0.134 4.134 22 C -0.145 4.145 23 C -0.139 4.139 24 C -0.133 4.133 25 H 0.087 0.913 26 H 0.081 0.919 27 H 0.084 0.916 28 H 0.069 0.931 29 H 0.066 0.934 30 H 0.225 0.775 31 H 0.084 0.916 32 H 0.095 0.905 33 H 0.229 0.771 34 H 0.103 0.897 35 H 0.103 0.897 36 H 0.042 0.958 37 H 0.037 0.963 38 H 0.073 0.927 39 H 0.146 0.854 40 H 0.139 0.861 41 H 0.136 0.864 42 H 0.137 0.863 43 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 0.032 0.255 28.637 28.638 hybrid contribution 0.309 0.276 -0.087 0.424 sum 0.341 0.532 28.550 28.557 Atomic orbital electron populations 1.21872 0.92186 1.03376 1.02379 1.19785 0.96005 0.94371 0.93176 1.22181 0.81948 0.94988 0.99805 1.86535 1.18967 1.33537 1.97614 1.21323 0.99942 0.95433 0.82480 1.46187 1.55039 1.32477 1.05700 1.21490 0.79467 0.84575 0.84645 1.90651 1.37541 1.26576 1.86860 1.21658 1.01785 1.00430 0.92302 1.19363 0.97046 0.95825 0.91410 1.21119 1.32336 1.13566 0.89180 0.90973 1.24975 0.95594 0.96915 0.95799 1.69918 1.45872 1.40650 0.97890 0.86792 0.81466 0.83571 0.77714 1.20250 1.21470 1.18495 1.19454 0.97307 0.95258 0.93399 1.21239 0.97227 0.95372 0.99277 1.21162 0.99797 0.99943 0.92530 1.21127 0.98967 0.97017 0.97391 1.21062 0.98401 0.96136 0.98260 1.20873 1.00566 0.99975 0.91907 0.91271 0.91883 0.91597 0.93096 0.93395 0.77468 0.91621 0.90516 0.77089 0.89725 0.89730 0.95824 0.96281 0.92745 0.85448 0.86093 0.86352 0.86307 0.86438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.10 8.11 37.16 0.30 -0.80 16 2 C -0.03 -0.31 0.45 -155.66 -0.07 -0.38 16 3 C 0.09 0.74 5.56 37.16 0.21 0.95 16 4 O -0.56 -5.58 12.61 -35.23 -0.44 -6.03 16 5 C 0.13 1.68 3.08 -4.04 -0.01 1.67 16 6 N -0.74 -10.00 4.96 -60.29 -0.30 -10.29 16 7 C 0.51 9.45 7.83 -10.99 -0.09 9.36 16 8 O -0.54 -12.29 15.98 5.56 0.09 -12.20 16 9 C -0.12 -2.38 5.64 -27.88 -0.16 -2.54 16 10 C 0.00 0.04 3.33 -27.89 -0.09 -0.06 16 11 C -0.52 -15.11 9.66 -34.44 -0.33 -15.44 16 12 H 0.07 2.16 7.99 -52.48 -0.42 1.74 16 13 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 14 N -0.90 -28.20 13.96 55.43 0.77 -27.43 16 15 Si 0.88 22.85 27.47 -169.99 -4.67 18.18 16 16 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 17 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 18 H -0.26 -6.78 6.54 56.52 0.37 -6.41 16 19 C -0.05 -0.55 4.41 -104.63 -0.46 -1.01 16 20 C -0.11 -1.25 8.98 -39.58 -0.36 -1.60 16 21 C -0.12 -1.14 10.05 -39.58 -0.40 -1.53 16 22 C -0.13 -1.11 10.05 -39.58 -0.40 -1.50 16 23 C -0.12 -1.01 10.05 -39.58 -0.40 -1.41 16 24 C -0.12 -1.02 8.71 -39.58 -0.34 -1.36 16 25 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 26 H 0.06 0.40 7.39 -51.93 -0.38 0.01 16 27 H 0.07 0.47 6.86 -51.93 -0.36 0.12 16 28 H 0.05 0.39 6.86 -51.93 -0.36 0.03 16 29 H 0.05 0.32 7.39 -51.93 -0.38 -0.06 16 30 H 0.38 2.22 9.12 45.56 0.42 2.63 16 31 H 0.07 0.89 7.50 -51.93 -0.39 0.50 16 32 H 0.08 1.15 7.07 -51.93 -0.37 0.78 16 33 H 0.39 4.15 6.16 -40.82 -0.25 3.90 16 34 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 35 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 36 H 0.02 0.62 7.16 -51.93 -0.37 0.25 16 37 H 0.02 0.50 7.53 -51.93 -0.39 0.10 16 38 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 39 H 0.13 1.47 5.90 -52.48 -0.31 1.16 16 40 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 41 H 0.12 0.78 8.06 -52.48 -0.42 0.36 16 42 H 0.12 0.74 8.06 -52.49 -0.42 0.31 16 43 H 0.12 0.82 7.10 -52.49 -0.37 0.45 16 LS Contribution 348.03 15.07 5.24 5.24 Total: -1.00 -36.10 348.03 -7.64 -43.74 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: -5.64 Total: 2.50 kcal Atomic # 6 Polarization: -11.02 SS G_CDS: -2.69 Total: -13.71 kcal Atomic # 7 Polarization: -38.20 SS G_CDS: 0.47 Total: -37.72 kcal Atomic # 8 Polarization: -17.87 SS G_CDS: -0.36 Total: -18.23 kcal Atomic # 14 Polarization: 22.85 SS G_CDS: -4.67 Total: 18.18 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -36.10 -7.64 -43.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360612640.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.603 kcal (2) G-P(sol) polarization free energy of solvation -36.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds