Wall clock time and date at job start Tue Mar 31 2020 06:52:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.46623 * 2 1 4 4 O 1.42896 * 109.46890 * 179.97438 * 3 2 1 5 5 C 1.52997 * 109.47317 * 240.00180 * 2 1 3 6 6 N 1.46505 * 109.47212 * 59.99649 * 5 2 1 7 7 C 1.34771 * 119.99622 * 179.97438 * 6 5 2 8 8 O 1.21280 * 120.00597 * 0.02562 * 7 6 5 9 9 C 1.50701 * 119.99622 * 179.97438 * 7 6 5 10 10 C 1.52997 * 109.47212 * 180.02562 * 9 7 6 11 11 C 1.50697 * 109.47466 * 180.02562 * 10 9 7 12 12 H 1.08006 * 119.99920 * 359.97438 * 11 10 9 13 13 C 1.37876 * 120.00428 * 180.02562 * 11 10 9 14 14 N 1.31520 * 120.00162 * 179.97438 * 13 11 10 15 15 Si 1.86798 * 119.99868 * 359.97438 * 13 11 10 16 16 H 1.48504 * 109.47023 * 90.00014 * 15 13 11 17 17 H 1.48502 * 109.47442 * 209.99974 * 15 13 11 18 18 H 1.48498 * 109.47139 * 330.00202 * 15 13 11 19 19 C 1.50697 * 109.46961 * 119.99739 * 2 1 3 20 20 C 1.38231 * 119.99893 * 119.73425 * 19 2 1 21 21 C 1.38240 * 120.00319 * 179.80883 * 20 19 2 22 22 C 1.38232 * 119.99491 * 0.39439 * 21 20 19 23 23 C 1.38235 * 120.00450 * 359.85656 * 22 21 20 24 24 C 1.38234 * 119.99790 * 359.95488 * 23 22 21 25 25 H 1.09002 * 109.46716 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47486 * 299.99829 * 1 2 3 27 27 H 1.09001 * 109.47362 * 60.00551 * 1 2 3 28 28 H 1.08993 * 109.46955 * 300.00075 * 3 2 1 29 29 H 1.09000 * 109.47050 * 59.99904 * 3 2 1 30 30 H 0.96698 * 114.00134 * 180.02562 * 4 3 2 31 31 H 1.09002 * 109.47153 * 299.99641 * 5 2 1 32 32 H 1.09001 * 109.46832 * 179.97438 * 5 2 1 33 33 H 0.96996 * 119.99606 * 0.02562 * 6 5 2 34 34 H 1.09001 * 109.47380 * 300.00190 * 9 7 6 35 35 H 1.09002 * 109.47060 * 60.00278 * 9 7 6 36 36 H 1.09001 * 109.47289 * 299.99918 * 10 9 7 37 37 H 1.09002 * 109.47153 * 60.00002 * 10 9 7 38 38 H 0.97006 * 119.99550 * 179.97438 * 14 13 11 39 39 H 1.08005 * 120.00050 * 359.97438 * 20 19 2 40 40 H 1.07994 * 120.00336 * 180.22735 * 21 20 19 41 41 H 1.08007 * 119.99667 * 179.83216 * 22 21 20 42 42 H 1.07993 * 120.00477 * 179.97438 * 23 22 21 43 43 H 1.08001 * 120.00135 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 8 3.4688 1.4427 0.0006 5 6 2.0400 -0.7212 -1.2492 6 7 1.5516 -0.0306 -2.4454 7 6 1.8777 -0.4908 -3.6695 8 8 2.5751 -1.4768 -3.7808 9 6 1.3749 0.2193 -4.8999 10 6 1.8850 -0.5019 -6.1492 11 6 1.3828 0.2085 -7.3796 12 1 0.7614 1.0863 -7.2806 13 6 1.7155 -0.2628 -8.6319 14 7 1.2767 0.3569 -9.7058 15 14 2.7896 -1.7814 -8.8033 16 1 1.9312 -2.9924 -8.8482 17 1 3.5812 -1.6891 -10.0564 18 1 3.7103 -1.8702 -7.6416 19 6 2.0323 -0.7103 1.2305 20 6 2.8224 -1.8374 1.1037 21 6 3.2865 -2.4868 2.2324 22 6 2.9536 -2.0138 3.4878 23 6 2.1591 -0.8897 3.6147 24 6 1.6983 -0.2380 2.4860 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5137 -0.8900 28 1 1.6765 1.9563 -0.8899 29 1 1.6765 1.9564 0.8900 30 1 3.8621 2.3261 0.0010 31 1 1.6768 -1.7489 -1.2492 32 1 3.1300 -0.7207 -1.2494 33 1 0.9943 0.7582 -2.3564 34 1 0.2849 0.2184 -4.9000 35 1 1.7374 1.2472 -4.8999 36 1 2.9750 -0.5013 -6.1494 37 1 1.5222 -1.5297 -6.1490 38 1 1.5112 0.0255 -10.5868 39 1 3.0795 -2.2092 0.1228 40 1 3.9069 -3.3653 2.1333 41 1 3.3139 -2.5227 4.3697 42 1 1.8987 -0.5203 4.5955 43 1 1.0773 0.6400 2.5851 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360612640.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:05 Heat of formation + Delta-G solvation = -101.432630 kcal Electronic energy + Delta-G solvation = -23013.562730 eV Core-core repulsion = 19636.008321 eV Total energy + Delta-G solvation = -3377.554410 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.37065 -40.28846 -38.31344 -36.38453 -35.53571 -34.32003 -33.24976 -31.90216 -30.52269 -28.76830 -27.19744 -26.77358 -23.96931 -23.30440 -22.71367 -21.30895 -20.24478 -19.24291 -18.27306 -18.11736 -17.48634 -16.89744 -16.75371 -16.23768 -16.06390 -15.78467 -15.44012 -15.27451 -14.86048 -14.65191 -14.53893 -14.17433 -14.12174 -13.90502 -13.43674 -13.39212 -13.16860 -12.91135 -12.83804 -12.47680 -12.23429 -12.10142 -11.97276 -11.77681 -11.72350 -11.40381 -11.40002 -10.86626 -10.78746 -10.78289 -10.08477 -9.77542 -9.57385 -8.31899 -6.34310 0.49034 0.53076 1.32321 1.34409 1.49836 1.69888 2.22942 2.34637 2.90262 3.03851 3.27551 3.49374 3.81563 3.90875 4.01653 4.11798 4.16570 4.29444 4.32695 4.39814 4.49003 4.55104 4.57426 4.61851 4.67749 4.71960 4.85983 4.89497 4.98863 5.02693 5.15132 5.17947 5.27224 5.32723 5.44508 5.45619 5.60947 5.62482 5.66157 5.71313 6.14668 6.23373 6.57429 6.71917 6.93262 7.30912 7.31644 8.83644 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.029968 B = 0.003032 C = 0.002893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.112505 B = 9233.743033 C = 9676.915581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.026 4.026 3 C 0.086 3.914 4 O -0.588 6.588 5 C 0.137 3.863 6 N -0.713 5.713 7 C 0.513 3.487 8 O -0.589 6.589 9 C -0.115 4.115 10 C 0.004 3.996 11 C -0.527 4.527 12 H 0.053 0.947 13 C 0.014 3.986 14 N -0.943 5.943 15 Si 0.936 3.064 16 H -0.269 1.269 17 H -0.278 1.278 18 H -0.264 1.264 19 C -0.064 4.064 20 C -0.141 4.141 21 C -0.130 4.130 22 C -0.133 4.133 23 C -0.122 4.122 24 C -0.118 4.118 25 H 0.058 0.942 26 H 0.086 0.914 27 H 0.074 0.926 28 H 0.060 0.940 29 H 0.073 0.927 30 H 0.394 0.606 31 H 0.052 0.948 32 H 0.051 0.949 33 H 0.413 0.587 34 H 0.105 0.895 35 H 0.103 0.897 36 H 0.007 0.993 37 H 0.007 0.993 38 H 0.267 0.733 39 H 0.108 0.892 40 H 0.127 0.873 41 H 0.139 0.861 42 H 0.146 0.854 43 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.090 2.507 31.427 31.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.027 4.027 3 C 0.008 3.992 4 O -0.396 6.396 5 C 0.014 3.986 6 N -0.367 5.367 7 C 0.301 3.699 8 O -0.469 6.469 9 C -0.155 4.155 10 C -0.034 4.034 11 C -0.565 4.565 12 H 0.071 0.929 13 C -0.184 4.184 14 N -0.583 5.583 15 Si 0.761 3.239 16 H -0.194 1.194 17 H -0.203 1.203 18 H -0.188 1.188 19 C -0.064 4.064 20 C -0.159 4.159 21 C -0.148 4.148 22 C -0.151 4.151 23 C -0.140 4.140 24 C -0.135 4.135 25 H 0.077 0.923 26 H 0.105 0.895 27 H 0.093 0.907 28 H 0.079 0.921 29 H 0.091 0.909 30 H 0.244 0.756 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.251 0.749 34 H 0.123 0.877 35 H 0.121 0.879 36 H 0.026 0.974 37 H 0.026 0.974 38 H 0.076 0.924 39 H 0.126 0.874 40 H 0.145 0.855 41 H 0.157 0.843 42 H 0.163 0.837 43 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -0.694 1.171 31.172 31.202 hybrid contribution 0.511 0.061 -0.791 0.943 sum -0.183 1.232 30.381 30.407 Atomic orbital electron populations 1.21894 0.90553 1.03259 1.03991 1.19773 0.97168 0.94775 0.90949 1.22302 0.81355 0.94053 1.01475 1.86505 1.20023 1.35298 1.97740 1.21281 0.98473 0.95356 0.83524 1.45884 1.53827 1.32446 1.04520 1.21246 0.79016 0.83874 0.85759 1.90639 1.39939 1.28729 1.87612 1.21492 1.02952 1.00613 0.90412 1.19223 0.95948 0.95470 0.92728 1.21424 1.31505 1.12971 0.90607 0.92912 1.25779 0.97032 0.99808 0.95736 1.70021 1.47427 1.42362 0.98513 0.85856 0.79896 0.80341 0.77777 1.19373 1.20293 1.18849 1.19575 0.97412 0.95079 0.94352 1.21269 0.98960 0.96775 0.98943 1.21351 1.00170 1.00391 0.92903 1.21433 0.98819 0.97349 0.97495 1.21448 0.97478 0.95609 0.99430 1.21144 1.00546 1.00621 0.91220 0.92299 0.89524 0.90738 0.92145 0.90859 0.75647 0.92979 0.93048 0.74871 0.87654 0.87864 0.97425 0.97419 0.92376 0.87406 0.85453 0.84269 0.83658 0.84033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.81 8.11 71.98 0.58 -1.22 16 2 C -0.03 -0.45 0.45 -52.93 -0.02 -0.48 16 3 C 0.09 1.20 5.56 71.98 0.40 1.60 16 4 O -0.59 -10.81 12.61 -148.98 -1.88 -12.69 16 5 C 0.14 3.50 3.08 86.38 0.27 3.77 16 6 N -0.71 -18.42 4.96 -463.06 -2.30 -20.72 16 7 C 0.51 18.75 7.83 87.66 0.69 19.44 16 8 O -0.59 -27.26 15.98 -3.03 -0.05 -27.31 16 9 C -0.11 -4.36 5.64 29.85 0.17 -4.19 16 10 C 0.00 0.22 3.33 29.85 0.10 0.32 16 11 C -0.53 -30.58 9.66 25.60 0.25 -30.33 16 12 H 0.05 3.19 7.99 -2.91 -0.02 3.17 16 13 C 0.01 0.85 5.47 84.65 0.46 1.31 16 14 N -0.94 -59.25 13.96 21.45 0.30 -58.95 16 15 Si 0.94 47.47 27.47 68.60 1.88 49.35 16 16 H -0.27 -13.17 7.11 99.48 0.71 -12.46 16 17 H -0.28 -13.46 7.11 99.48 0.71 -12.76 16 18 H -0.26 -13.43 6.54 99.48 0.65 -12.78 16 19 C -0.06 -1.22 4.41 -19.87 -0.09 -1.31 16 20 C -0.14 -3.20 8.98 22.27 0.20 -3.00 16 21 C -0.13 -2.54 10.05 22.27 0.22 -2.31 16 22 C -0.13 -2.10 10.05 22.27 0.22 -1.87 16 23 C -0.12 -1.71 10.05 22.27 0.22 -1.48 16 24 C -0.12 -1.76 8.71 22.27 0.19 -1.56 16 25 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 26 H 0.09 0.74 7.39 -2.39 -0.02 0.72 16 27 H 0.07 0.83 6.86 -2.39 -0.02 0.81 16 28 H 0.06 0.72 6.86 -2.39 -0.02 0.70 16 29 H 0.07 0.69 7.39 -2.39 -0.02 0.67 16 30 H 0.39 3.94 9.12 -74.06 -0.68 3.27 16 31 H 0.05 1.48 7.50 -2.39 -0.02 1.46 16 32 H 0.05 1.60 7.07 -2.39 -0.02 1.58 16 33 H 0.41 7.62 6.16 -92.71 -0.57 7.05 16 34 H 0.11 3.56 8.14 -2.39 -0.02 3.54 16 35 H 0.10 3.53 8.14 -2.39 -0.02 3.51 16 36 H 0.01 0.40 7.16 -2.39 -0.02 0.38 16 37 H 0.01 0.39 7.53 -2.39 -0.02 0.37 16 38 H 0.27 15.71 8.31 -92.70 -0.77 14.94 16 39 H 0.11 2.75 5.90 -2.91 -0.02 2.73 16 40 H 0.13 2.14 8.06 -2.91 -0.02 2.11 16 41 H 0.14 1.52 8.06 -2.91 -0.02 1.50 16 42 H 0.15 1.23 8.06 -2.91 -0.02 1.20 16 43 H 0.14 1.37 7.10 -2.91 -0.02 1.35 16 Total: -1.00 -79.26 348.03 1.55 -77.72 By element: Atomic # 1 Polarization: 14.22 SS G_CDS: -0.28 Total: 13.94 kcal Atomic # 6 Polarization: -25.20 SS G_CDS: 3.87 Total: -21.34 kcal Atomic # 7 Polarization: -77.67 SS G_CDS: -2.00 Total: -79.67 kcal Atomic # 8 Polarization: -38.08 SS G_CDS: -1.93 Total: -40.00 kcal Atomic # 14 Polarization: 47.47 SS G_CDS: 1.88 Total: 49.35 kcal Total: -79.26 1.55 -77.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360612640.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.717 kcal (2) G-P(sol) polarization free energy of solvation -79.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds