Wall clock time and date at job start Tue Mar 31 2020 06:45:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.47117 * 2 1 4 4 N 1.46508 * 109.46796 * 179.97438 * 3 2 1 5 5 C 1.37099 * 119.99923 * 264.25184 * 4 3 2 6 6 H 1.07996 * 119.99783 * 146.19476 * 5 4 3 7 7 C 1.38951 * 119.99976 * 326.19985 * 5 4 3 8 8 N 1.31411 * 120.00358 * 337.65754 * 7 5 4 9 9 Si 1.86802 * 119.99729 * 157.65742 * 7 5 4 10 10 H 1.48496 * 109.47350 * 59.99383 * 9 7 5 11 11 H 1.48499 * 109.47135 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.46906 * 299.99691 * 9 7 5 13 13 C 1.34770 * 119.99710 * 84.53503 * 4 3 2 14 14 O 1.21294 * 120.00343 * 359.71768 * 13 4 3 15 15 C 1.50706 * 119.99890 * 179.72427 * 13 4 3 16 16 C 1.53003 * 109.47101 * 179.97438 * 15 13 4 17 17 H 1.09002 * 109.46932 * 54.99901 * 16 15 13 18 18 O 1.42897 * 109.47249 * 294.99871 * 16 15 13 19 19 C 1.53000 * 109.46813 * 174.99903 * 16 15 13 20 20 C 1.50700 * 109.47130 * 185.00091 * 19 16 15 21 21 C 1.38231 * 119.99805 * 269.72708 * 20 19 16 22 22 C 1.38240 * 119.99985 * 179.76069 * 21 20 19 23 23 C 1.38239 * 119.99643 * 0.51439 * 22 21 20 24 24 C 1.38233 * 120.00102 * 359.73944 * 23 22 21 25 25 C 1.38237 * 119.99881 * 89.99559 * 20 19 16 26 26 H 1.08997 * 109.47172 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47282 * 300.00250 * 1 2 3 28 28 H 1.09003 * 109.46602 * 59.99859 * 1 2 3 29 29 H 1.08999 * 109.47282 * 239.99750 * 2 1 3 30 30 H 1.09003 * 109.46602 * 120.00141 * 2 1 3 31 31 H 1.09002 * 109.47224 * 60.00265 * 3 2 1 32 32 H 1.08999 * 109.47222 * 300.00004 * 3 2 1 33 33 H 0.96994 * 119.99749 * 180.02562 * 8 7 5 34 34 H 1.08997 * 109.46774 * 299.99862 * 15 13 4 35 35 H 1.08998 * 109.47282 * 59.99508 * 15 13 4 36 36 H 0.96704 * 113.99415 * 300.00443 * 18 16 15 37 37 H 1.09004 * 109.47029 * 304.99991 * 19 16 15 38 38 H 1.09000 * 109.47238 * 64.99997 * 19 16 15 39 39 H 1.08003 * 120.00157 * 359.97438 * 21 20 19 40 40 H 1.07999 * 120.00412 * 180.22963 * 22 21 20 41 41 H 1.08004 * 119.99932 * 179.72395 * 23 22 21 42 42 H 1.08004 * 120.00280 * 179.97438 * 24 23 22 43 43 H 1.07996 * 120.00515 * 0.02562 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5051 1.4424 0.0006 5 6 4.1901 1.5614 1.1822 6 1 5.1330 1.0516 1.3135 7 6 3.6711 2.3380 2.2110 8 7 2.7999 3.2850 1.9442 9 14 4.2118 2.0359 3.9733 10 1 5.6798 2.2320 4.0813 11 1 3.5168 2.9896 4.8747 12 1 3.8680 0.6453 4.3650 13 6 4.1794 1.3310 -1.1610 14 8 3.5734 1.2257 -2.2064 15 6 5.6864 1.3372 -1.1610 16 6 6.1970 1.1976 -2.5965 17 1 5.7591 1.9806 -3.2156 18 8 5.8242 -0.0818 -3.1124 19 6 7.7213 1.3288 -2.6106 20 6 8.2136 1.3144 -4.0349 21 6 8.5477 0.1165 -4.6386 22 6 8.9946 0.1028 -5.9467 23 6 9.1174 1.2880 -6.6476 24 6 8.7882 2.4863 -6.0422 25 6 8.3362 2.4995 -4.7358 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6767 1.9563 -0.8900 33 1 2.4379 3.8272 2.6623 34 1 6.0459 2.2746 -0.7367 35 1 6.0532 0.5033 -0.5625 36 1 6.1795 -0.8274 -2.6093 37 1 8.0096 2.2667 -2.1360 38 1 8.1628 0.4948 -2.0651 39 1 8.4564 -0.8089 -4.0894 40 1 9.2521 -0.8334 -6.4196 41 1 9.4707 1.2777 -7.6681 42 1 8.8845 3.4123 -6.5896 43 1 8.0797 3.4358 -4.2627 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000362582997.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:42 Heat of formation + Delta-G solvation = -76.363879 kcal Electronic energy + Delta-G solvation = -23235.084844 eV Core-core repulsion = 19858.617497 eV Total energy + Delta-G solvation = -3376.467347 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.43552 -38.61039 -36.77634 -34.88221 -32.83644 -32.67232 -31.32150 -30.81890 -30.15195 -27.00687 -25.60617 -24.31855 -22.51311 -22.11368 -20.85813 -20.50266 -19.02618 -17.24718 -16.53657 -15.91623 -15.76144 -15.43331 -14.93782 -14.83934 -14.54399 -14.24074 -13.81581 -13.57321 -13.52519 -13.31388 -12.91314 -12.48662 -12.42969 -12.33386 -11.68887 -11.57924 -11.42945 -11.29507 -11.04976 -10.94686 -10.89198 -10.86374 -10.64195 -10.50947 -10.31017 -10.18187 -9.73698 -9.63840 -9.04718 -8.84201 -8.54739 -8.28932 -7.49276 -6.38336 -4.04227 1.43708 1.48021 3.09488 3.18869 3.20542 3.84625 3.97049 4.10641 4.61612 4.84914 4.90425 4.98534 5.00678 5.05305 5.17338 5.38928 5.46757 5.55895 5.63621 5.70196 5.83424 5.86086 5.89563 5.97417 6.06402 6.11935 6.14729 6.37726 6.45719 6.52369 6.55509 6.57934 6.58856 6.64640 6.74415 6.77545 6.87941 7.08339 7.17225 7.36748 7.51558 7.95382 8.15413 8.38974 9.09001 9.58480 10.02496 10.62830 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.019489 B = 0.003758 C = 0.003382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1436.338411 B = 7449.869938 C = 8276.304938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.134 4.134 3 C 0.116 3.884 4 N -0.443 5.443 5 C -0.340 4.340 6 H 0.088 0.912 7 C 0.043 3.957 8 N -0.858 5.858 9 Si 0.911 3.089 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.273 1.273 13 C 0.470 3.530 14 O -0.591 6.591 15 C -0.152 4.152 16 C 0.133 3.867 17 H 0.100 0.900 18 O -0.541 6.541 19 C -0.118 4.118 20 C -0.065 4.065 21 C -0.106 4.106 22 C -0.122 4.122 23 C -0.131 4.131 24 C -0.121 4.121 25 C -0.119 4.119 26 H 0.044 0.956 27 H 0.050 0.950 28 H 0.049 0.951 29 H 0.053 0.947 30 H 0.055 0.945 31 H 0.105 0.895 32 H 0.049 0.951 33 H 0.270 0.730 34 H 0.093 0.907 35 H 0.079 0.921 36 H 0.359 0.641 37 H 0.082 0.918 38 H 0.074 0.926 39 H 0.119 0.881 40 H 0.118 0.882 41 H 0.116 0.884 42 H 0.118 0.882 43 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.765 -3.732 -6.907 12.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.173 4.173 3 C -0.007 4.007 4 N -0.162 5.162 5 C -0.468 4.468 6 H 0.105 0.895 7 C -0.163 4.163 8 N -0.494 5.494 9 Si 0.738 3.262 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.199 1.199 13 C 0.258 3.742 14 O -0.476 6.476 15 C -0.192 4.192 16 C 0.073 3.927 17 H 0.117 0.883 18 O -0.344 6.344 19 C -0.156 4.156 20 C -0.065 4.065 21 C -0.124 4.124 22 C -0.140 4.140 23 C -0.149 4.149 24 C -0.139 4.139 25 C -0.137 4.137 26 H 0.063 0.937 27 H 0.069 0.931 28 H 0.068 0.932 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.123 0.877 32 H 0.067 0.933 33 H 0.080 0.920 34 H 0.111 0.889 35 H 0.097 0.903 36 H 0.204 0.796 37 H 0.101 0.899 38 H 0.093 0.907 39 H 0.137 0.863 40 H 0.136 0.864 41 H 0.134 0.866 42 H 0.136 0.864 43 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 9.017 -3.239 -7.738 12.315 hybrid contribution 0.565 -0.330 1.557 1.689 sum 9.581 -3.569 -6.181 11.947 Atomic orbital electron populations 1.21655 0.96705 1.00357 1.01329 1.21833 0.94623 0.99629 1.01195 1.21403 0.81621 0.94351 1.03356 1.43495 1.04695 1.63012 1.05002 1.19357 1.07284 1.29204 0.90920 0.89472 1.25302 0.97111 0.93585 1.00301 1.69941 1.30067 1.16165 1.33239 0.86261 0.78959 0.78467 0.82560 1.19776 1.20918 1.19869 1.20222 0.89081 0.81115 0.83736 1.90568 1.70160 1.55248 1.31637 1.22140 0.96031 1.04082 0.96993 1.21632 0.90005 0.86969 0.94112 0.88255 1.86726 1.76870 1.14395 1.56409 1.21470 0.97604 1.03633 0.92858 1.19803 0.97390 0.93216 0.96139 1.21000 0.98783 0.97476 0.95113 1.21104 1.00165 0.97933 0.94780 1.21076 1.01356 0.92837 0.99681 1.21094 0.99742 0.97920 0.95168 1.21089 0.99971 0.97901 0.94788 0.93701 0.93074 0.93156 0.92817 0.92590 0.87720 0.93253 0.92009 0.88907 0.90287 0.79579 0.89920 0.90726 0.86285 0.86432 0.86558 0.86374 0.86114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.50 9.91 37.16 0.37 -2.13 16 2 C -0.13 -2.84 6.22 -26.73 -0.17 -3.00 16 3 C 0.12 2.84 4.89 -4.04 -0.02 2.82 16 4 N -0.44 -11.13 2.56 -114.81 -0.29 -11.42 16 5 C -0.34 -8.43 8.70 -14.93 -0.13 -8.56 16 6 H 0.09 2.03 6.98 -52.49 -0.37 1.67 16 7 C 0.04 1.06 4.92 -17.47 -0.09 0.98 16 8 N -0.86 -22.39 11.34 55.50 0.63 -21.76 16 9 Si 0.91 19.01 29.61 -169.99 -5.03 13.98 16 10 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 11 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 12 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 13 C 0.47 11.37 7.48 -10.99 -0.08 11.28 16 14 O -0.59 -15.88 15.09 -8.86 -0.13 -16.02 16 15 C -0.15 -2.87 4.04 -27.88 -0.11 -2.98 16 16 C 0.13 2.23 2.50 -26.73 -0.07 2.16 16 17 H 0.10 1.92 7.95 -51.93 -0.41 1.51 16 18 O -0.54 -9.55 12.08 -49.64 -0.60 -10.15 16 19 C -0.12 -1.54 5.03 -27.88 -0.14 -1.68 16 20 C -0.07 -0.87 4.96 -104.63 -0.52 -1.39 16 21 C -0.11 -1.33 9.41 -39.58 -0.37 -1.70 16 22 C -0.12 -1.41 10.05 -39.58 -0.40 -1.80 16 23 C -0.13 -1.47 10.05 -39.58 -0.40 -1.87 16 24 C -0.12 -1.42 10.05 -39.58 -0.40 -1.82 16 25 C -0.12 -1.54 9.70 -39.58 -0.38 -1.92 16 26 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 30 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 31 H 0.11 2.68 5.35 -51.93 -0.28 2.41 16 32 H 0.05 1.26 7.60 -51.93 -0.39 0.87 16 33 H 0.27 6.66 8.31 -40.82 -0.34 6.32 16 34 H 0.09 1.73 8.10 -51.93 -0.42 1.31 16 35 H 0.08 1.36 7.64 -51.93 -0.40 0.96 16 36 H 0.36 4.90 9.05 45.56 0.41 5.31 16 37 H 0.08 1.00 8.09 -51.93 -0.42 0.58 16 38 H 0.07 0.85 8.08 -51.93 -0.42 0.43 16 39 H 0.12 1.32 8.06 -52.48 -0.42 0.89 16 40 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 41 H 0.12 1.02 8.06 -52.48 -0.42 0.60 16 42 H 0.12 1.12 8.06 -52.48 -0.42 0.69 16 43 H 0.12 1.41 8.06 -52.49 -0.42 0.99 16 LS Contribution 358.05 15.07 5.40 5.40 Total: -1.00 -30.72 358.05 -9.00 -39.72 By element: Atomic # 1 Polarization: 17.94 SS G_CDS: -6.06 Total: 11.88 kcal Atomic # 6 Polarization: -8.72 SS G_CDS: -2.90 Total: -11.62 kcal Atomic # 7 Polarization: -33.52 SS G_CDS: 0.34 Total: -33.19 kcal Atomic # 8 Polarization: -25.43 SS G_CDS: -0.73 Total: -26.17 kcal Atomic # 14 Polarization: 19.01 SS G_CDS: -5.03 Total: 13.98 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -30.72 -9.00 -39.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362582997.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.648 kcal (2) G-P(sol) polarization free energy of solvation -30.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds