Wall clock time and date at job start Tue Mar 31 2020 06:45:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.47117 * 2 1 4 4 N 1.46508 * 109.46796 * 179.97438 * 3 2 1 5 5 C 1.37099 * 119.99923 * 264.25184 * 4 3 2 6 6 H 1.07996 * 119.99783 * 146.19476 * 5 4 3 7 7 C 1.38951 * 119.99976 * 326.19985 * 5 4 3 8 8 N 1.31411 * 120.00358 * 337.65754 * 7 5 4 9 9 Si 1.86802 * 119.99729 * 157.65742 * 7 5 4 10 10 H 1.48496 * 109.47350 * 59.99383 * 9 7 5 11 11 H 1.48499 * 109.47135 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.46906 * 299.99691 * 9 7 5 13 13 C 1.34770 * 119.99710 * 84.53503 * 4 3 2 14 14 O 1.21294 * 120.00343 * 359.71768 * 13 4 3 15 15 C 1.50706 * 119.99890 * 179.72427 * 13 4 3 16 16 C 1.53003 * 109.47101 * 179.97438 * 15 13 4 17 17 H 1.09002 * 109.46932 * 54.99901 * 16 15 13 18 18 O 1.42897 * 109.47249 * 294.99871 * 16 15 13 19 19 C 1.53000 * 109.46813 * 174.99903 * 16 15 13 20 20 C 1.50700 * 109.47130 * 185.00091 * 19 16 15 21 21 C 1.38231 * 119.99805 * 269.72708 * 20 19 16 22 22 C 1.38240 * 119.99985 * 179.76069 * 21 20 19 23 23 C 1.38239 * 119.99643 * 0.51439 * 22 21 20 24 24 C 1.38233 * 120.00102 * 359.73944 * 23 22 21 25 25 C 1.38237 * 119.99881 * 89.99559 * 20 19 16 26 26 H 1.08997 * 109.47172 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47282 * 300.00250 * 1 2 3 28 28 H 1.09003 * 109.46602 * 59.99859 * 1 2 3 29 29 H 1.08999 * 109.47282 * 239.99750 * 2 1 3 30 30 H 1.09003 * 109.46602 * 120.00141 * 2 1 3 31 31 H 1.09002 * 109.47224 * 60.00265 * 3 2 1 32 32 H 1.08999 * 109.47222 * 300.00004 * 3 2 1 33 33 H 0.96994 * 119.99749 * 180.02562 * 8 7 5 34 34 H 1.08997 * 109.46774 * 299.99862 * 15 13 4 35 35 H 1.08998 * 109.47282 * 59.99508 * 15 13 4 36 36 H 0.96704 * 113.99415 * 300.00443 * 18 16 15 37 37 H 1.09004 * 109.47029 * 304.99991 * 19 16 15 38 38 H 1.09000 * 109.47238 * 64.99997 * 19 16 15 39 39 H 1.08003 * 120.00157 * 359.97438 * 21 20 19 40 40 H 1.07999 * 120.00412 * 180.22963 * 22 21 20 41 41 H 1.08004 * 119.99932 * 179.72395 * 23 22 21 42 42 H 1.08004 * 120.00280 * 179.97438 * 24 23 22 43 43 H 1.07996 * 120.00515 * 0.02562 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5051 1.4424 0.0006 5 6 4.1901 1.5614 1.1822 6 1 5.1330 1.0516 1.3135 7 6 3.6711 2.3380 2.2110 8 7 2.7999 3.2850 1.9442 9 14 4.2118 2.0359 3.9733 10 1 5.6798 2.2320 4.0813 11 1 3.5168 2.9896 4.8747 12 1 3.8680 0.6453 4.3650 13 6 4.1794 1.3310 -1.1610 14 8 3.5734 1.2257 -2.2064 15 6 5.6864 1.3372 -1.1610 16 6 6.1970 1.1976 -2.5965 17 1 5.7591 1.9806 -3.2156 18 8 5.8242 -0.0818 -3.1124 19 6 7.7213 1.3288 -2.6106 20 6 8.2136 1.3144 -4.0349 21 6 8.5477 0.1165 -4.6386 22 6 8.9946 0.1028 -5.9467 23 6 9.1174 1.2880 -6.6476 24 6 8.7882 2.4863 -6.0422 25 6 8.3362 2.4995 -4.7358 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6767 1.9563 -0.8900 33 1 2.4379 3.8272 2.6623 34 1 6.0459 2.2746 -0.7367 35 1 6.0532 0.5033 -0.5625 36 1 6.1795 -0.8274 -2.6093 37 1 8.0096 2.2667 -2.1360 38 1 8.1628 0.4948 -2.0651 39 1 8.4564 -0.8089 -4.0894 40 1 9.2521 -0.8334 -6.4196 41 1 9.4707 1.2777 -7.6681 42 1 8.8845 3.4123 -6.5896 43 1 8.0797 3.4358 -4.2627 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000362582997.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:41 Heat of formation + Delta-G solvation = -93.393996 kcal Electronic energy + Delta-G solvation = -23235.823326 eV Core-core repulsion = 19858.617497 eV Total energy + Delta-G solvation = -3377.205828 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.75453 -40.06200 -38.17406 -36.76645 -34.56436 -33.79886 -33.19103 -31.71820 -31.51506 -28.32851 -27.33885 -26.03121 -23.50307 -23.33770 -22.26916 -21.83518 -20.91175 -18.86494 -17.82610 -17.49062 -17.12551 -16.88193 -16.47603 -15.99064 -15.85729 -15.80900 -15.47071 -15.16645 -14.82877 -14.39283 -14.21163 -14.06801 -13.71538 -13.40085 -13.31764 -13.16925 -12.97463 -12.72734 -12.58843 -12.48733 -12.37362 -12.12371 -11.99366 -11.95406 -11.77317 -11.68642 -11.51904 -11.05173 -10.86760 -10.24351 -9.74706 -9.48512 -9.44795 -8.27563 -6.00240 0.51512 0.57510 1.44870 1.51309 1.59085 2.11318 2.34564 2.86920 3.03393 3.13943 3.61704 3.84160 4.01707 4.10430 4.17473 4.21770 4.25204 4.29159 4.33074 4.36730 4.52032 4.55863 4.67483 4.71413 4.81928 4.87129 4.90856 4.96779 4.99281 5.08219 5.17373 5.20438 5.24981 5.29195 5.36817 5.47917 5.58207 5.63400 5.67407 5.80124 6.05484 6.20239 6.46536 6.99768 7.17088 7.67174 8.11989 8.74942 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.019489 B = 0.003758 C = 0.003382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1436.338411 B = 7449.869938 C = 8276.304938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.123 4.123 3 C 0.116 3.884 4 N -0.456 5.456 5 C -0.355 4.355 6 H 0.103 0.897 7 C 0.002 3.998 8 N -0.894 5.894 9 Si 0.981 3.019 10 H -0.260 1.260 11 H -0.287 1.287 12 H -0.269 1.269 13 C 0.453 3.547 14 O -0.627 6.627 15 C -0.141 4.141 16 C 0.144 3.856 17 H 0.065 0.935 18 O -0.562 6.562 19 C -0.104 4.104 20 C -0.086 4.086 21 C -0.118 4.118 22 C -0.130 4.130 23 C -0.136 4.136 24 C -0.131 4.131 25 C -0.140 4.140 26 H 0.072 0.928 27 H 0.056 0.944 28 H 0.049 0.951 29 H 0.037 0.963 30 H 0.055 0.945 31 H 0.092 0.908 32 H 0.023 0.977 33 H 0.271 0.729 34 H 0.095 0.905 35 H 0.101 0.899 36 H 0.377 0.623 37 H 0.090 0.910 38 H 0.096 0.904 39 H 0.131 0.869 40 H 0.140 0.860 41 H 0.141 0.859 42 H 0.137 0.863 43 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.330 -4.939 -6.245 13.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.162 4.162 3 C -0.008 4.008 4 N -0.174 5.174 5 C -0.482 4.482 6 H 0.120 0.880 7 C -0.201 4.201 8 N -0.531 5.531 9 Si 0.805 3.195 10 H -0.184 1.184 11 H -0.213 1.213 12 H -0.194 1.194 13 C 0.243 3.757 14 O -0.515 6.515 15 C -0.181 4.181 16 C 0.084 3.916 17 H 0.083 0.917 18 O -0.367 6.367 19 C -0.141 4.141 20 C -0.086 4.086 21 C -0.136 4.136 22 C -0.148 4.148 23 C -0.154 4.154 24 C -0.149 4.149 25 C -0.158 4.158 26 H 0.091 0.909 27 H 0.075 0.925 28 H 0.068 0.932 29 H 0.056 0.944 30 H 0.074 0.926 31 H 0.110 0.890 32 H 0.041 0.959 33 H 0.081 0.919 34 H 0.114 0.886 35 H 0.119 0.881 36 H 0.224 0.776 37 H 0.109 0.891 38 H 0.115 0.885 39 H 0.149 0.851 40 H 0.158 0.842 41 H 0.159 0.841 42 H 0.155 0.845 43 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 10.601 -4.459 -7.068 13.499 hybrid contribution 0.046 0.069 1.265 1.268 sum 10.647 -4.390 -5.804 12.896 Atomic orbital electron populations 1.21614 0.93795 1.02323 1.01633 1.21705 0.97162 0.97003 1.00287 1.21359 0.82061 0.96077 1.01277 1.43801 1.04999 1.62919 1.05704 1.19768 1.08018 1.29540 0.90910 0.87954 1.26174 0.96999 0.92889 1.04064 1.70055 1.31432 1.17146 1.34469 0.85173 0.79061 0.78124 0.77150 1.18393 1.21253 1.19406 1.21152 0.91359 0.80203 0.82939 1.90532 1.71487 1.56715 1.32738 1.22115 0.92023 1.05001 0.98936 1.21402 0.92391 0.85970 0.91799 0.91686 1.86676 1.77645 1.15256 1.57139 1.21308 0.94316 1.05002 0.93516 1.19916 0.98468 0.93825 0.96345 1.21259 0.98852 0.97681 0.95845 1.21459 0.99617 0.99145 0.94589 1.21451 1.00555 0.92516 1.00838 1.21408 0.99359 0.99197 0.94940 1.21322 1.00624 0.98147 0.95661 0.90865 0.92472 0.93186 0.94369 0.92575 0.88975 0.95887 0.91930 0.88641 0.88087 0.77584 0.89119 0.88522 0.85090 0.84217 0.84090 0.84502 0.85866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.64 9.91 71.98 0.71 -3.93 16 2 C -0.12 -5.24 6.22 30.59 0.19 -5.05 16 3 C 0.12 5.84 4.89 86.38 0.42 6.26 16 4 N -0.46 -23.29 2.56 -635.53 -1.63 -24.91 16 5 C -0.36 -17.47 8.70 84.04 0.73 -16.74 16 6 H 0.10 4.61 6.98 -2.91 -0.02 4.59 16 7 C 0.00 0.07 4.92 84.93 0.42 0.49 16 8 N -0.89 -47.16 11.34 21.66 0.25 -46.92 16 9 Si 0.98 38.11 29.61 68.60 2.03 40.14 16 10 H -0.26 -9.50 7.11 99.48 0.71 -8.79 16 11 H -0.29 -11.21 7.11 99.48 0.71 -10.50 16 12 H -0.27 -10.22 7.11 99.48 0.71 -9.51 16 13 C 0.45 22.39 7.48 87.66 0.66 23.05 16 14 O -0.63 -34.95 15.09 10.70 0.16 -34.79 16 15 C -0.14 -5.26 4.04 29.85 0.12 -5.14 16 16 C 0.14 4.85 2.50 30.60 0.08 4.92 16 17 H 0.07 2.62 7.95 -2.39 -0.02 2.60 16 18 O -0.56 -19.67 12.08 -135.21 -1.63 -21.30 16 19 C -0.10 -2.58 5.03 29.85 0.15 -2.43 16 20 C -0.09 -2.21 4.96 -19.87 -0.10 -2.31 16 21 C -0.12 -2.80 9.41 22.27 0.21 -2.59 16 22 C -0.13 -2.77 10.05 22.27 0.22 -2.54 16 23 C -0.14 -2.79 10.05 22.27 0.22 -2.57 16 24 C -0.13 -2.92 10.05 22.27 0.22 -2.69 16 25 C -0.14 -3.54 9.70 22.27 0.22 -3.32 16 26 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 27 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 28 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 29 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 30 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 31 H 0.09 4.86 5.35 -2.39 -0.01 4.85 16 32 H 0.02 1.23 7.60 -2.39 -0.02 1.21 16 33 H 0.27 13.51 8.31 -92.71 -0.77 12.74 16 34 H 0.10 3.51 8.10 -2.39 -0.02 3.49 16 35 H 0.10 3.30 7.64 -2.39 -0.02 3.29 16 36 H 0.38 9.82 9.05 -74.05 -0.67 9.15 16 37 H 0.09 2.08 8.09 -2.39 -0.02 2.06 16 38 H 0.10 1.96 8.08 -2.39 -0.02 1.94 16 39 H 0.13 2.65 8.06 -2.91 -0.02 2.63 16 40 H 0.14 2.24 8.06 -2.91 -0.02 2.22 16 41 H 0.14 2.11 8.06 -2.91 -0.02 2.08 16 42 H 0.14 2.39 8.06 -2.91 -0.02 2.37 16 43 H 0.12 2.90 8.06 -2.91 -0.02 2.88 16 Total: -1.00 -67.41 358.05 3.97 -63.43 By element: Atomic # 1 Polarization: 38.62 SS G_CDS: 0.32 Total: 38.94 kcal Atomic # 6 Polarization: -19.07 SS G_CDS: 4.48 Total: -14.59 kcal Atomic # 7 Polarization: -70.45 SS G_CDS: -1.38 Total: -71.83 kcal Atomic # 8 Polarization: -54.62 SS G_CDS: -1.47 Total: -56.09 kcal Atomic # 14 Polarization: 38.11 SS G_CDS: 2.03 Total: 40.14 kcal Total: -67.41 3.97 -63.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362582997.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.961 kcal (2) G-P(sol) polarization free energy of solvation -67.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds