Wall clock time and date at job start Tue Mar 31 2020 06:36:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47480 * 2 1 4 4 N 1.46898 * 109.46850 * 120.00111 * 2 1 3 5 5 C 1.46896 * 111.00186 * 270.58088 * 4 2 1 6 6 C 1.53001 * 109.46910 * 75.83418 * 5 4 2 7 7 C 1.50697 * 109.47258 * 174.00136 * 6 5 4 8 8 O 1.20829 * 120.00253 * 0.02562 * 7 6 5 9 9 O 1.34227 * 120.00280 * 180.02562 * 7 6 5 10 10 C 1.46908 * 111.00010 * 146.62993 * 4 2 1 11 11 C 1.50701 * 109.47182 * 293.95528 * 10 4 2 12 12 C 1.38631 * 119.74797 * 269.72983 * 11 10 4 13 13 C 1.37623 * 120.24729 * 179.71951 * 12 11 10 14 14 C 1.40713 * 119.74342 * 0.56630 * 13 12 11 15 15 C 1.41396 * 120.24418 * 179.67803 * 14 13 12 16 16 H 1.07996 * 119.99891 * 164.21441 * 15 14 13 17 17 C 1.39943 * 120.00060 * 344.22421 * 15 14 13 18 18 N 1.30828 * 120.00228 * 330.15893 * 17 15 14 19 19 Si 1.86807 * 120.00356 * 150.16074 * 17 15 14 20 20 H 1.48503 * 109.46882 * 94.99467 * 19 17 15 21 21 H 1.48499 * 109.47398 * 214.99682 * 19 17 15 22 22 H 1.48507 * 109.46659 * 334.99793 * 19 17 15 23 23 C 1.40710 * 119.51393 * 359.70553 * 14 13 12 24 24 C 1.37621 * 119.74512 * 0.02562 * 23 14 13 25 25 H 1.09001 * 109.46502 * 308.45360 * 1 2 3 26 26 H 1.08999 * 109.46688 * 68.44783 * 1 2 3 27 27 H 1.08991 * 109.47122 * 188.44765 * 1 2 3 28 28 H 1.09005 * 109.46860 * 239.99649 * 2 1 3 29 29 H 1.09000 * 109.47321 * 179.97438 * 3 2 1 30 30 H 1.08999 * 109.47289 * 300.00041 * 3 2 1 31 31 H 1.08999 * 109.46969 * 59.99790 * 3 2 1 32 32 H 1.08999 * 109.47388 * 195.83173 * 5 4 2 33 33 H 1.08999 * 109.47420 * 315.83537 * 5 4 2 34 34 H 1.08998 * 109.47269 * 294.00283 * 6 5 4 35 35 H 1.09003 * 109.47332 * 54.00066 * 6 5 4 36 36 H 0.96702 * 117.00252 * 180.02562 * 9 7 6 37 37 H 1.09003 * 109.46953 * 53.95233 * 10 4 2 38 38 H 1.08993 * 109.47448 * 173.95462 * 10 4 2 39 39 H 1.08000 * 119.87897 * 359.97438 * 12 11 10 40 40 H 1.07998 * 120.12731 * 180.27246 * 13 12 11 41 41 H 0.96995 * 120.00211 * 180.02562 * 18 17 15 42 42 H 1.07997 * 120.13137 * 179.97438 * 23 14 13 43 43 H 1.07994 * 119.87962 * 180.02562 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0196 -0.6925 1.1994 5 6 2.1820 0.2445 2.3190 6 6 0.8087 0.5892 2.8987 7 6 0.9828 1.4315 4.1361 8 8 2.0916 1.7264 4.5152 9 8 -0.0938 1.8543 4.8173 10 6 3.2750 -1.4031 0.9215 11 6 3.0142 -2.5201 -0.0561 12 6 2.6791 -3.7807 0.4133 13 6 2.4331 -4.8067 -0.4704 14 6 2.5346 -4.5752 -1.8546 15 6 2.2909 -5.6234 -2.7718 16 1 2.1172 -5.3995 -3.8139 17 6 2.2745 -6.9508 -2.3290 18 7 3.0090 -7.3088 -1.3073 19 14 1.2039 -8.2119 -3.1969 20 1 2.0126 -8.9328 -4.2126 21 1 0.6776 -9.1821 -2.2035 22 1 0.0703 -7.5230 -3.8647 23 6 2.8810 -3.2930 -2.3194 24 6 3.1171 -2.2806 -1.4177 25 1 -0.3632 0.6391 0.8048 26 1 -0.3633 0.3775 -0.9558 27 1 -0.3633 -1.0164 0.1510 28 1 1.8934 -0.5139 -0.8900 29 1 3.1301 1.4424 0.0005 30 1 1.6768 1.9563 -0.8900 31 1 1.6768 1.9563 0.8900 32 1 2.7975 -0.2158 3.0918 33 1 2.6653 1.1547 1.9639 34 1 0.2312 1.1444 2.1596 35 1 0.2818 -0.3297 3.1560 36 1 0.0681 2.3923 5.6043 37 1 3.9989 -0.7087 0.4950 38 1 3.6713 -1.8170 1.8487 39 1 2.6067 -3.9574 1.4763 40 1 2.1679 -5.7869 -0.1027 41 1 2.9980 -8.2289 -1.0007 42 1 2.9621 -3.1044 -3.3797 43 1 3.3827 -1.2956 -1.7721 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399126089.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:12 Heat of formation + Delta-G solvation = -69.912003 kcal Electronic energy + Delta-G solvation = -23247.828372 eV Core-core repulsion = 19871.640799 eV Total energy + Delta-G solvation = -3376.187573 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.46248 -38.86828 -37.15530 -36.26215 -33.93240 -32.06761 -31.81351 -29.52737 -29.20040 -27.22217 -26.33979 -24.16900 -23.15475 -21.22267 -20.91113 -19.95445 -19.19084 -18.11672 -17.31955 -16.81942 -16.55988 -15.51565 -15.32730 -14.89302 -14.54535 -13.97415 -13.82281 -13.48862 -13.21903 -13.17843 -12.72771 -12.53021 -12.29417 -12.26940 -11.93019 -11.87090 -11.68243 -11.52516 -11.14775 -11.12787 -10.95681 -10.92192 -10.73901 -10.66260 -10.48609 -10.38342 -10.16894 -9.55394 -9.40266 -8.96400 -7.92647 -7.43442 -7.35494 -6.88859 -4.30638 2.07393 2.70627 2.88837 3.05134 3.08632 3.10662 3.23360 3.89536 4.28002 4.62353 4.78281 4.93693 5.14543 5.27724 5.28286 5.45315 5.56804 5.69089 5.75726 5.81463 5.82262 5.86222 5.95594 6.02541 6.12112 6.14472 6.26377 6.33826 6.40028 6.46530 6.50615 6.60608 6.98028 7.03238 7.31446 7.36685 7.46878 7.49695 7.61998 7.74325 7.92521 8.06025 8.19232 8.29817 8.64178 8.88919 9.00499 10.05402 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.025884 B = 0.003272 C = 0.003184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.475610 B = 8554.710797 C = 8793.122567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.063 3.937 3 C -0.181 4.181 4 N -0.525 5.525 5 C 0.053 3.947 6 C -0.116 4.116 7 C 0.479 3.521 8 O -0.520 6.520 9 O -0.520 6.520 10 C 0.122 3.878 11 C -0.216 4.216 12 C -0.072 4.072 13 C -0.184 4.184 14 C 0.114 3.886 15 C -0.464 4.464 16 H 0.078 0.922 17 C 0.085 3.915 18 N -0.772 5.772 19 Si 0.898 3.102 20 H -0.270 1.270 21 H -0.274 1.274 22 H -0.258 1.258 23 C -0.235 4.235 24 C -0.079 4.079 25 H 0.049 0.951 26 H 0.051 0.949 27 H 0.067 0.933 28 H 0.098 0.902 29 H 0.052 0.948 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.076 0.924 33 H 0.054 0.946 34 H 0.111 0.889 35 H 0.115 0.885 36 H 0.407 0.593 37 H 0.024 0.976 38 H 0.065 0.935 39 H 0.085 0.915 40 H 0.113 0.887 41 H 0.282 0.718 42 H 0.088 0.912 43 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.108 12.679 6.799 15.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.045 4.045 3 C -0.240 4.240 4 N -0.249 5.249 5 C -0.075 4.075 6 C -0.153 4.153 7 C 0.322 3.678 8 O -0.408 6.408 9 O -0.331 6.331 10 C -0.003 4.003 11 C -0.218 4.218 12 C -0.091 4.091 13 C -0.203 4.203 14 C 0.111 3.889 15 C -0.492 4.492 16 H 0.097 0.903 17 C -0.136 4.136 18 N -0.395 5.395 19 Si 0.722 3.278 20 H -0.195 1.195 21 H -0.199 1.199 22 H -0.182 1.182 23 C -0.255 4.255 24 C -0.097 4.097 25 H 0.068 0.932 26 H 0.070 0.930 27 H 0.086 0.914 28 H 0.116 0.884 29 H 0.071 0.929 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.095 0.905 33 H 0.072 0.928 34 H 0.129 0.871 35 H 0.133 0.867 36 H 0.265 0.735 37 H 0.042 0.958 38 H 0.083 0.917 39 H 0.103 0.897 40 H 0.131 0.869 41 H 0.093 0.907 42 H 0.106 0.894 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -5.118 11.958 6.837 14.695 hybrid contribution 0.286 0.310 0.000 0.422 sum -4.831 12.268 6.837 14.852 Atomic orbital electron populations 1.21972 0.94942 1.02567 1.00426 1.21882 0.95759 0.91916 0.94963 1.22480 1.01160 0.98617 1.01709 1.62256 1.31042 1.26660 1.04933 1.22039 0.94067 0.96817 0.94620 1.21663 1.01694 1.00153 0.91828 1.23772 0.81707 0.77577 0.84778 1.90718 1.26787 1.55087 1.68234 1.84565 1.39337 1.66523 1.42707 1.20732 0.88146 0.93538 0.97930 1.18754 1.16622 0.93997 0.92429 1.20435 0.98787 0.92748 0.97132 1.21237 1.07516 0.98438 0.93115 1.17560 0.87272 0.91589 0.92487 1.19584 1.42945 0.90281 0.96392 0.90342 1.25954 0.93377 0.99874 0.94429 1.69913 1.27856 1.19497 1.22256 0.86469 0.81453 0.79828 0.80055 1.19535 1.19893 1.18181 1.20808 1.12882 0.94835 0.96968 1.20304 1.00134 0.96374 0.92912 0.93189 0.93017 0.91406 0.88393 0.92872 0.92360 0.92398 0.90514 0.92766 0.87118 0.86673 0.73481 0.95824 0.91680 0.89655 0.86881 0.90687 0.89360 0.89977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.82 9.03 37.16 0.34 -1.48 16 2 C 0.06 0.90 2.65 -67.71 -0.18 0.72 16 3 C -0.18 -2.18 7.85 37.16 0.29 -1.89 16 4 N -0.53 -7.96 4.32 -228.08 -0.99 -8.95 16 5 C 0.05 0.69 3.85 -3.83 -0.01 0.67 16 6 C -0.12 -1.26 5.01 -27.88 -0.14 -1.40 16 7 C 0.48 5.32 8.33 36.00 0.30 5.62 16 8 O -0.52 -7.33 16.66 -18.75 -0.31 -7.64 16 9 O -0.52 -4.43 13.42 -39.25 -0.53 -4.96 16 10 C 0.12 2.12 5.08 -4.97 -0.03 2.10 16 11 C -0.22 -4.56 5.04 -104.33 -0.53 -5.08 16 12 C -0.07 -1.66 9.67 -39.66 -0.38 -2.04 16 13 C -0.18 -4.72 8.81 -38.87 -0.34 -5.06 16 14 C 0.11 2.99 5.64 -106.83 -0.60 2.39 16 15 C -0.46 -12.18 9.00 -37.74 -0.34 -12.52 16 16 H 0.08 1.99 8.00 -52.49 -0.42 1.57 16 17 C 0.08 2.09 4.94 -17.34 -0.09 2.00 16 18 N -0.77 -19.57 11.18 55.55 0.62 -18.95 16 19 Si 0.90 18.22 29.65 -169.99 -5.04 13.18 16 20 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 21 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 22 H -0.26 -5.24 7.11 56.52 0.40 -4.84 16 23 C -0.24 -5.69 9.80 -38.87 -0.38 -6.07 16 24 C -0.08 -1.70 7.96 -39.66 -0.32 -2.01 16 25 H 0.05 0.54 5.09 -51.93 -0.26 0.28 16 26 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.10 1.64 4.56 -51.93 -0.24 1.40 16 29 H 0.05 0.66 7.83 -51.93 -0.41 0.26 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.06 0.64 5.33 -51.93 -0.28 0.36 16 32 H 0.08 1.07 7.51 -51.93 -0.39 0.68 16 33 H 0.05 0.71 5.21 -51.93 -0.27 0.44 16 34 H 0.11 1.09 4.52 -51.93 -0.23 0.86 16 35 H 0.12 1.24 8.14 -51.93 -0.42 0.82 16 36 H 0.41 1.74 9.10 45.56 0.41 2.16 16 37 H 0.02 0.40 7.96 -51.93 -0.41 -0.02 16 38 H 0.06 1.10 7.76 -51.93 -0.40 0.70 16 39 H 0.09 1.82 8.06 -52.49 -0.42 1.40 16 40 H 0.11 3.01 6.01 -52.49 -0.32 2.69 16 41 H 0.28 6.45 8.30 -40.82 -0.34 6.11 16 42 H 0.09 2.03 8.06 -52.49 -0.42 1.61 16 43 H 0.08 1.58 7.27 -52.49 -0.38 1.20 16 LS Contribution 342.32 15.07 5.16 5.16 Total: -1.00 -28.81 342.32 -8.76 -37.57 By element: Atomic # 1 Polarization: 13.91 SS G_CDS: -5.27 Total: 8.64 kcal Atomic # 6 Polarization: -21.65 SS G_CDS: -2.41 Total: -24.06 kcal Atomic # 7 Polarization: -27.53 SS G_CDS: -0.36 Total: -27.89 kcal Atomic # 8 Polarization: -11.76 SS G_CDS: -0.84 Total: -12.60 kcal Atomic # 14 Polarization: 18.22 SS G_CDS: -5.04 Total: 13.18 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -28.81 -8.76 -37.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399126089.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.339 kcal (2) G-P(sol) polarization free energy of solvation -28.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds