Wall clock time and date at job start Tue Mar 31 2020 06:36:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47480 * 2 1 4 4 N 1.46898 * 109.46850 * 120.00111 * 2 1 3 5 5 C 1.46896 * 111.00186 * 270.58088 * 4 2 1 6 6 C 1.53001 * 109.46910 * 75.83418 * 5 4 2 7 7 C 1.50697 * 109.47258 * 174.00136 * 6 5 4 8 8 O 1.20829 * 120.00253 * 0.02562 * 7 6 5 9 9 O 1.34227 * 120.00280 * 180.02562 * 7 6 5 10 10 C 1.46908 * 111.00010 * 146.62993 * 4 2 1 11 11 C 1.50701 * 109.47182 * 293.95528 * 10 4 2 12 12 C 1.38631 * 119.74797 * 269.72983 * 11 10 4 13 13 C 1.37623 * 120.24729 * 179.71951 * 12 11 10 14 14 C 1.40713 * 119.74342 * 0.56630 * 13 12 11 15 15 C 1.41396 * 120.24418 * 179.67803 * 14 13 12 16 16 H 1.07996 * 119.99891 * 164.21441 * 15 14 13 17 17 C 1.39943 * 120.00060 * 344.22421 * 15 14 13 18 18 N 1.30828 * 120.00228 * 330.15893 * 17 15 14 19 19 Si 1.86807 * 120.00356 * 150.16074 * 17 15 14 20 20 H 1.48503 * 109.46882 * 94.99467 * 19 17 15 21 21 H 1.48499 * 109.47398 * 214.99682 * 19 17 15 22 22 H 1.48507 * 109.46659 * 334.99793 * 19 17 15 23 23 C 1.40710 * 119.51393 * 359.70553 * 14 13 12 24 24 C 1.37621 * 119.74512 * 0.02562 * 23 14 13 25 25 H 1.09001 * 109.46502 * 308.45360 * 1 2 3 26 26 H 1.08999 * 109.46688 * 68.44783 * 1 2 3 27 27 H 1.08991 * 109.47122 * 188.44765 * 1 2 3 28 28 H 1.09005 * 109.46860 * 239.99649 * 2 1 3 29 29 H 1.09000 * 109.47321 * 179.97438 * 3 2 1 30 30 H 1.08999 * 109.47289 * 300.00041 * 3 2 1 31 31 H 1.08999 * 109.46969 * 59.99790 * 3 2 1 32 32 H 1.08999 * 109.47388 * 195.83173 * 5 4 2 33 33 H 1.08999 * 109.47420 * 315.83537 * 5 4 2 34 34 H 1.08998 * 109.47269 * 294.00283 * 6 5 4 35 35 H 1.09003 * 109.47332 * 54.00066 * 6 5 4 36 36 H 0.96702 * 117.00252 * 180.02562 * 9 7 6 37 37 H 1.09003 * 109.46953 * 53.95233 * 10 4 2 38 38 H 1.08993 * 109.47448 * 173.95462 * 10 4 2 39 39 H 1.08000 * 119.87897 * 359.97438 * 12 11 10 40 40 H 1.07998 * 120.12731 * 180.27246 * 13 12 11 41 41 H 0.96995 * 120.00211 * 180.02562 * 18 17 15 42 42 H 1.07997 * 120.13137 * 179.97438 * 23 14 13 43 43 H 1.07994 * 119.87962 * 180.02562 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0196 -0.6925 1.1994 5 6 2.1820 0.2445 2.3190 6 6 0.8087 0.5892 2.8987 7 6 0.9828 1.4315 4.1361 8 8 2.0916 1.7264 4.5152 9 8 -0.0938 1.8543 4.8173 10 6 3.2750 -1.4031 0.9215 11 6 3.0142 -2.5201 -0.0561 12 6 2.6791 -3.7807 0.4133 13 6 2.4331 -4.8067 -0.4704 14 6 2.5346 -4.5752 -1.8546 15 6 2.2909 -5.6234 -2.7718 16 1 2.1172 -5.3995 -3.8139 17 6 2.2745 -6.9508 -2.3290 18 7 3.0090 -7.3088 -1.3073 19 14 1.2039 -8.2119 -3.1969 20 1 2.0126 -8.9328 -4.2126 21 1 0.6776 -9.1821 -2.2035 22 1 0.0703 -7.5230 -3.8647 23 6 2.8810 -3.2930 -2.3194 24 6 3.1171 -2.2806 -1.4177 25 1 -0.3632 0.6391 0.8048 26 1 -0.3633 0.3775 -0.9558 27 1 -0.3633 -1.0164 0.1510 28 1 1.8934 -0.5139 -0.8900 29 1 3.1301 1.4424 0.0005 30 1 1.6768 1.9563 -0.8900 31 1 1.6768 1.9563 0.8900 32 1 2.7975 -0.2158 3.0918 33 1 2.6653 1.1547 1.9639 34 1 0.2312 1.1444 2.1596 35 1 0.2818 -0.3297 3.1560 36 1 0.0681 2.3923 5.6043 37 1 3.9989 -0.7087 0.4950 38 1 3.6713 -1.8170 1.8487 39 1 2.6067 -3.9574 1.4763 40 1 2.1679 -5.7869 -0.1027 41 1 2.9980 -8.2289 -1.0007 42 1 2.9621 -3.1044 -3.3797 43 1 3.3827 -1.2956 -1.7721 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399126089.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:12 Heat of formation + Delta-G solvation = -86.850534 kcal Electronic energy + Delta-G solvation = -23248.562881 eV Core-core repulsion = 19871.640799 eV Total energy + Delta-G solvation = -3376.922082 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.35264 -40.17655 -38.77506 -37.08600 -35.72293 -33.30837 -33.04876 -31.19044 -30.92854 -28.29969 -27.85077 -25.42712 -24.56407 -22.85321 -22.17550 -21.48666 -20.35093 -19.21199 -18.95679 -17.81873 -17.47635 -17.13023 -16.51712 -16.18298 -15.96258 -15.65504 -15.28947 -14.80795 -14.55507 -14.26542 -14.03988 -13.80066 -13.67492 -13.49881 -13.28458 -13.16842 -13.07965 -12.72695 -12.69363 -12.51854 -12.40214 -12.15310 -12.09265 -11.88590 -11.73904 -11.67108 -11.44993 -11.22685 -11.09980 -10.82517 -9.33723 -9.24448 -9.06198 -8.72739 -6.25097 0.99003 1.20784 1.22718 1.37847 1.48004 1.57476 2.10394 2.19998 2.65502 3.25139 3.81649 3.85182 4.01535 4.08786 4.26649 4.34611 4.36600 4.49023 4.50905 4.60796 4.63084 4.67197 4.79550 4.85117 4.87863 4.94918 5.01428 5.04465 5.10969 5.16979 5.18990 5.39542 5.45673 5.52469 5.56006 5.64673 5.73614 6.01251 6.13430 6.22115 6.33327 6.40341 6.41998 6.74274 6.96834 7.02557 7.10159 8.24662 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.025884 B = 0.003272 C = 0.003184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.475610 B = 8554.710797 C = 8793.122567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.059 3.941 3 C -0.174 4.174 4 N -0.532 5.532 5 C 0.056 3.944 6 C -0.111 4.111 7 C 0.489 3.511 8 O -0.554 6.554 9 O -0.513 6.513 10 C 0.128 3.872 11 C -0.201 4.201 12 C -0.078 4.078 13 C -0.209 4.209 14 C 0.083 3.917 15 C -0.505 4.505 16 H 0.074 0.926 17 C 0.045 3.955 18 N -0.805 5.805 19 Si 0.973 3.027 20 H -0.260 1.260 21 H -0.264 1.264 22 H -0.259 1.259 23 C -0.253 4.253 24 C -0.074 4.074 25 H 0.073 0.927 26 H 0.061 0.939 27 H 0.044 0.956 28 H 0.072 0.928 29 H 0.047 0.953 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.067 0.933 33 H 0.059 0.941 34 H 0.126 0.874 35 H 0.118 0.882 36 H 0.427 0.573 37 H 0.033 0.967 38 H 0.069 0.931 39 H 0.099 0.901 40 H 0.095 0.905 41 H 0.291 0.709 42 H 0.091 0.909 43 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.148 14.350 7.467 17.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.049 4.049 3 C -0.233 4.233 4 N -0.256 5.256 5 C -0.071 4.071 6 C -0.148 4.148 7 C 0.333 3.667 8 O -0.445 6.445 9 O -0.326 6.326 10 C 0.001 3.999 11 C -0.203 4.203 12 C -0.097 4.097 13 C -0.228 4.228 14 C 0.080 3.920 15 C -0.533 4.533 16 H 0.092 0.908 17 C -0.173 4.173 18 N -0.429 5.429 19 Si 0.793 3.207 20 H -0.185 1.185 21 H -0.188 1.188 22 H -0.183 1.183 23 C -0.272 4.272 24 C -0.092 4.092 25 H 0.092 0.908 26 H 0.080 0.920 27 H 0.063 0.937 28 H 0.090 0.910 29 H 0.066 0.934 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.085 0.915 33 H 0.077 0.923 34 H 0.143 0.857 35 H 0.136 0.864 36 H 0.289 0.711 37 H 0.051 0.949 38 H 0.088 0.912 39 H 0.117 0.883 40 H 0.113 0.887 41 H 0.102 0.898 42 H 0.109 0.891 43 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -6.171 13.654 7.524 16.767 hybrid contribution 0.621 -0.039 -0.102 0.630 sum -5.550 13.615 7.423 16.470 Atomic orbital electron populations 1.21935 0.93860 1.01754 1.01975 1.21901 0.96630 0.92969 0.93359 1.22401 1.00770 0.97052 1.03029 1.62159 1.29604 1.27828 1.06008 1.22000 0.95431 0.96237 0.93469 1.21560 1.00404 1.00601 0.92262 1.23640 0.81488 0.76963 0.84622 1.90719 1.28098 1.56502 1.69171 1.84511 1.38053 1.66523 1.43524 1.20614 0.89494 0.92757 0.97047 1.19146 1.13612 0.94395 0.93148 1.20659 0.98445 0.93051 0.97559 1.21198 1.09509 0.98548 0.93539 1.17889 0.88332 0.92735 0.93008 1.19804 1.45459 0.91634 0.96415 0.90818 1.26772 0.93946 1.01359 0.95185 1.69936 1.28855 1.20494 1.23641 0.85345 0.79257 0.77043 0.79019 1.18478 1.18842 1.18318 1.21008 1.13511 0.94971 0.97745 1.20571 0.98864 0.96902 0.92869 0.90847 0.92008 0.93700 0.90989 0.93416 0.91033 0.91094 0.91472 0.92327 0.85656 0.86355 0.71143 0.94885 0.91242 0.88260 0.88655 0.89836 0.89067 0.87254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.23 9.03 71.98 0.65 -2.58 16 2 C 0.06 1.57 2.65 44.92 0.12 1.69 16 3 C -0.17 -3.66 7.85 71.98 0.57 -3.09 16 4 N -0.53 -15.12 4.32 -875.51 -3.78 -18.90 16 5 C 0.06 1.34 3.85 86.30 0.33 1.68 16 6 C -0.11 -2.10 5.01 29.85 0.15 -1.96 16 7 C 0.49 9.58 8.33 71.23 0.59 10.17 16 8 O -0.55 -14.52 16.66 21.96 0.37 -14.15 16 9 O -0.51 -7.14 13.42 -51.38 -0.69 -7.83 16 10 C 0.13 4.22 5.08 85.56 0.43 4.65 16 11 C -0.20 -8.37 5.04 -19.67 -0.10 -8.47 16 12 C -0.08 -3.65 9.67 22.22 0.21 -3.44 16 13 C -0.21 -11.12 8.81 22.73 0.20 -10.92 16 14 C 0.08 4.53 5.64 -21.29 -0.12 4.41 16 15 C -0.51 -27.64 9.00 23.46 0.21 -27.43 16 16 H 0.07 3.92 8.00 -2.91 -0.02 3.90 16 17 C 0.05 2.30 4.94 85.26 0.42 2.73 16 18 N -0.81 -42.13 11.18 21.83 0.24 -41.89 16 19 Si 0.97 38.04 29.65 68.60 2.03 40.07 16 20 H -0.26 -9.68 7.11 99.48 0.71 -8.97 16 21 H -0.26 -9.79 7.11 99.48 0.71 -9.08 16 22 H -0.26 -10.08 7.11 99.48 0.71 -9.37 16 23 C -0.25 -12.50 9.80 22.73 0.22 -12.28 16 24 C -0.07 -3.16 7.96 22.22 0.18 -2.98 16 25 H 0.07 1.35 5.09 -2.39 -0.01 1.33 16 26 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 27 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 28 H 0.07 2.29 4.56 -2.38 -0.01 2.28 16 29 H 0.05 1.06 7.83 -2.39 -0.02 1.04 16 30 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.07 1.31 5.33 -2.39 -0.01 1.30 16 32 H 0.07 1.75 7.51 -2.39 -0.02 1.73 16 33 H 0.06 1.37 5.21 -2.39 -0.01 1.35 16 34 H 0.13 2.00 4.52 -2.39 -0.01 1.99 16 35 H 0.12 2.24 8.14 -2.39 -0.02 2.22 16 36 H 0.43 2.35 9.10 -74.06 -0.67 1.67 16 37 H 0.03 1.04 7.96 -2.39 -0.02 1.02 16 38 H 0.07 2.24 7.76 -2.39 -0.02 2.22 16 39 H 0.10 4.25 8.06 -2.91 -0.02 4.22 16 40 H 0.10 5.33 6.01 -2.91 -0.02 5.31 16 41 H 0.29 13.61 8.30 -92.71 -0.77 12.84 16 42 H 0.09 4.32 8.06 -2.91 -0.02 4.29 16 43 H 0.11 4.05 7.27 -2.91 -0.02 4.03 16 Total: -1.00 -63.95 342.32 2.60 -61.35 By element: Atomic # 1 Polarization: 28.81 SS G_CDS: 0.36 Total: 29.17 kcal Atomic # 6 Polarization: -51.89 SS G_CDS: 4.07 Total: -47.82 kcal Atomic # 7 Polarization: -57.25 SS G_CDS: -3.54 Total: -60.79 kcal Atomic # 8 Polarization: -21.66 SS G_CDS: -0.32 Total: -21.98 kcal Atomic # 14 Polarization: 38.04 SS G_CDS: 2.03 Total: 40.07 kcal Total: -63.95 2.60 -61.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399126089.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.500 kcal (2) G-P(sol) polarization free energy of solvation -63.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds