Wall clock time and date at job start Tue Mar 31 2020 06:37:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47215 * 2 1 4 4 N 1.46501 * 109.47157 * 120.00673 * 2 1 3 5 5 C 1.46506 * 119.99843 * 299.99513 * 4 2 1 6 6 C 1.50704 * 109.47117 * 270.00636 * 5 4 2 7 7 H 1.07998 * 119.99746 * 359.97438 * 6 5 4 8 8 C 1.37869 * 120.00085 * 179.97438 * 6 5 4 9 9 N 1.31518 * 120.00187 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 120.00363 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.46906 * 0.02562 * 10 8 6 12 12 H 1.48504 * 109.46871 * 119.99899 * 10 8 6 13 13 H 1.48494 * 109.47357 * 240.00379 * 10 8 6 14 14 C 1.34768 * 120.00379 * 119.99948 * 4 2 1 15 15 O 1.21285 * 120.00294 * 179.97438 * 14 4 2 16 16 C 1.50705 * 119.99883 * 359.97438 * 14 4 2 17 17 O 1.42903 * 109.47122 * 180.02562 * 16 14 4 18 18 C 1.42893 * 113.99793 * 180.02562 * 17 16 14 19 19 C 1.50707 * 109.47070 * 179.97438 * 18 17 16 20 20 C 1.38238 * 119.99792 * 89.99993 * 19 18 17 21 21 C 1.38235 * 119.99712 * 179.97438 * 20 19 18 22 22 C 1.38234 * 120.00220 * 359.97124 * 21 20 19 23 23 C 1.38233 * 120.00037 * 0.28719 * 22 21 20 24 24 C 1.38234 * 120.00179 * 269.97930 * 19 18 17 25 25 H 1.09001 * 109.47029 * 299.99699 * 1 2 3 26 26 H 1.08996 * 109.47030 * 59.99769 * 1 2 3 27 27 H 1.08998 * 109.47248 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47029 * 240.00301 * 2 1 3 29 29 H 1.09002 * 109.46833 * 179.97438 * 3 2 1 30 30 H 1.08996 * 109.47310 * 300.00059 * 3 2 1 31 31 H 1.09001 * 109.46876 * 60.00208 * 3 2 1 32 32 H 1.08997 * 109.46902 * 29.99926 * 5 4 2 33 33 H 1.08990 * 109.47369 * 150.00151 * 5 4 2 34 34 H 0.96997 * 120.00729 * 179.97438 * 9 8 6 35 35 H 1.09005 * 109.47119 * 60.00082 * 16 14 4 36 36 H 1.08993 * 109.47044 * 300.00277 * 16 14 4 37 37 H 1.09005 * 109.47744 * 60.00256 * 18 17 16 38 38 H 1.09000 * 109.47353 * 299.99456 * 18 17 16 39 39 H 1.08005 * 120.00068 * 359.97438 * 20 19 18 40 40 H 1.07999 * 119.99770 * 179.97438 * 21 20 19 41 41 H 1.08002 * 119.99744 * 180.02562 * 22 21 20 42 42 H 1.07998 * 120.00395 * 179.72811 * 23 22 21 43 43 H 1.07999 * 119.99968 * 359.97438 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0184 -0.6908 1.1961 5 6 1.6645 -0.1903 2.5268 6 6 2.7033 0.8017 2.9830 7 1 3.5432 1.0356 2.3457 8 6 2.5813 1.4106 4.2139 9 7 1.5582 1.1262 4.9898 10 14 3.8692 2.6396 4.7798 11 1 4.9106 2.7836 3.7309 12 1 3.2251 3.9558 5.0212 13 1 4.4955 2.1570 6.0367 14 6 2.7932 -1.7865 1.0724 15 8 3.1979 -2.3581 2.0626 16 6 3.1568 -2.3016 -0.2964 17 8 3.9780 -3.4638 -0.1654 18 6 4.3813 -4.0340 -1.4120 19 6 5.2388 -5.2465 -1.1558 20 6 4.6546 -6.4939 -1.0383 21 6 5.4412 -7.6061 -0.8038 22 6 6.8120 -7.4712 -0.6874 23 6 7.3956 -6.2232 -0.7995 24 6 6.6095 -5.1115 -1.0387 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 3.1301 1.4424 0.0005 30 1 1.6768 1.9563 -0.8899 31 1 1.6767 1.9563 0.8900 32 1 0.6906 0.2972 2.4844 33 1 1.6239 -1.0227 3.2291 34 1 1.4725 1.5542 5.8560 35 1 3.7016 -1.5309 -0.8418 36 1 2.2483 -2.5586 -0.8410 37 1 4.9521 -3.2993 -1.9800 38 1 3.4984 -4.3265 -1.9803 39 1 3.5836 -6.5994 -1.1297 40 1 4.9847 -8.5806 -0.7116 41 1 7.4265 -8.3403 -0.5046 42 1 8.4662 -6.1171 -0.7042 43 1 7.0660 -4.1371 -1.1312 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000404071229.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:49 Heat of formation + Delta-G solvation = -56.486421 kcal Electronic energy + Delta-G solvation = -22952.229786 eV Core-core repulsion = 19576.624391 eV Total energy + Delta-G solvation = -3375.605396 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.57554 -39.12128 -37.25417 -35.80850 -32.83729 -32.08839 -31.00132 -30.83769 -28.86291 -26.84382 -26.58394 -25.42990 -22.68650 -22.65972 -21.46422 -21.25169 -18.25249 -17.29339 -16.64613 -16.50020 -16.20999 -16.09742 -15.30739 -14.98314 -14.89547 -14.30574 -13.88251 -13.66392 -13.49647 -13.45117 -12.95020 -12.79975 -12.67214 -12.33279 -12.03659 -11.80423 -11.63927 -11.54084 -11.20893 -11.13421 -11.02361 -10.91917 -10.83269 -10.57109 -10.37869 -9.99977 -9.63618 -9.50441 -9.01024 -8.99475 -8.75418 -8.39758 -7.64136 -6.00926 -4.04073 1.15937 1.31199 3.28483 3.31537 3.39330 3.41602 3.45664 3.79737 4.31520 4.48318 4.70018 4.76385 4.89870 4.98890 5.11852 5.13452 5.16741 5.26034 5.31503 5.34115 5.41648 5.44122 5.53837 5.57767 5.63446 5.85644 5.93516 5.98554 6.12983 6.23541 6.33278 6.35513 6.38938 6.50176 6.58217 6.87548 6.94230 7.01933 7.23679 7.49717 7.59751 7.96311 8.27913 8.43851 8.94899 9.13108 9.60030 11.07319 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.017781 B = 0.003506 C = 0.003177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1574.370384 B = 7983.608425 C = 8810.998489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.132 3.868 3 C -0.158 4.158 4 N -0.593 5.593 5 C 0.247 3.753 6 C -0.519 4.519 7 H 0.059 0.941 8 C 0.060 3.940 9 N -0.895 5.895 10 Si 0.895 3.105 11 H -0.274 1.274 12 H -0.284 1.284 13 H -0.283 1.283 14 C 0.506 3.494 15 O -0.519 6.519 16 C 0.044 3.956 17 O -0.354 6.354 18 C 0.099 3.901 19 C -0.086 4.086 20 C -0.097 4.097 21 C -0.125 4.125 22 C -0.117 4.117 23 C -0.125 4.125 24 C -0.097 4.097 25 H 0.069 0.931 26 H 0.059 0.941 27 H 0.052 0.948 28 H 0.071 0.929 29 H 0.054 0.946 30 H 0.049 0.951 31 H 0.082 0.918 32 H 0.036 0.964 33 H 0.042 0.958 34 H 0.262 0.738 35 H 0.073 0.927 36 H 0.071 0.929 37 H 0.058 0.942 38 H 0.057 0.943 39 H 0.123 0.877 40 H 0.122 0.878 41 H 0.121 0.879 42 H 0.123 0.877 43 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.906 -10.302 -17.731 20.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.028 3.972 3 C -0.215 4.215 4 N -0.327 5.327 5 C 0.129 3.871 6 C -0.557 4.557 7 H 0.077 0.923 8 C -0.142 4.142 9 N -0.535 5.535 10 Si 0.723 3.277 11 H -0.198 1.198 12 H -0.211 1.211 13 H -0.209 1.209 14 C 0.290 3.710 15 O -0.395 6.395 16 C -0.036 4.036 17 O -0.272 6.272 18 C 0.022 3.978 19 C -0.086 4.086 20 C -0.115 4.115 21 C -0.143 4.143 22 C -0.135 4.135 23 C -0.143 4.143 24 C -0.115 4.115 25 H 0.088 0.912 26 H 0.078 0.922 27 H 0.071 0.929 28 H 0.089 0.911 29 H 0.073 0.927 30 H 0.068 0.932 31 H 0.101 0.899 32 H 0.054 0.946 33 H 0.060 0.940 34 H 0.071 0.929 35 H 0.091 0.909 36 H 0.089 0.911 37 H 0.076 0.924 38 H 0.076 0.924 39 H 0.141 0.859 40 H 0.140 0.860 41 H 0.139 0.861 42 H 0.141 0.859 43 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 4.089 -10.637 -16.825 20.321 hybrid contribution 0.592 0.909 0.133 1.093 sum 4.682 -9.728 -16.692 19.879 Atomic orbital electron populations 1.22164 0.95456 1.01848 1.02561 1.21009 0.94270 0.94266 0.87669 1.22148 1.01393 0.95600 1.02407 1.48298 1.49364 1.26225 1.08815 1.19254 0.95915 0.94987 0.76992 1.21483 1.08873 1.23250 1.02142 0.92296 1.24928 0.95759 0.97177 0.96339 1.69939 1.29508 1.43366 1.10668 0.86486 0.81653 0.80736 0.78812 1.19832 1.21062 1.20942 1.19891 0.79907 0.81384 0.89772 1.90706 1.52072 1.57499 1.39175 1.22391 0.95081 0.88749 0.97429 1.88135 1.69000 1.42524 1.27549 1.21351 0.96780 0.92782 0.86848 1.19596 0.93792 0.93930 1.01297 1.21083 0.99915 0.92101 0.98425 1.21135 0.93971 0.98629 1.00586 1.21182 0.95087 0.97483 0.99755 1.21144 0.99924 0.92713 1.00484 1.21100 0.93192 0.98905 0.98267 0.91154 0.92231 0.92889 0.91117 0.92718 0.93216 0.89919 0.94611 0.94028 0.92856 0.90926 0.91092 0.92413 0.92447 0.85894 0.85966 0.86120 0.85944 0.85848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.31 9.17 37.16 0.34 -1.97 16 2 C 0.13 2.11 3.17 -67.93 -0.22 1.90 16 3 C -0.16 -2.54 8.47 37.16 0.31 -2.22 16 4 N -0.59 -12.55 2.39 -167.46 -0.40 -12.95 16 5 C 0.25 6.42 4.60 -5.19 -0.02 6.39 16 6 C -0.52 -14.52 7.83 -34.44 -0.27 -14.78 16 7 H 0.06 1.65 7.63 -52.49 -0.40 1.25 16 8 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 9 N -0.90 -26.62 13.29 55.43 0.74 -25.88 16 10 Si 0.90 21.97 29.54 -169.99 -5.02 16.95 16 11 H -0.27 -6.63 7.11 56.52 0.40 -6.22 16 12 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 13 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 14 C 0.51 11.04 7.75 -10.99 -0.09 10.96 16 15 O -0.52 -14.12 16.08 -14.36 -0.23 -14.35 16 16 C 0.04 0.69 4.73 36.01 0.17 0.86 16 17 O -0.35 -6.10 9.86 -55.14 -0.54 -6.64 16 18 C 0.10 1.22 6.06 36.01 0.22 1.44 16 19 C -0.09 -1.09 5.51 -104.62 -0.58 -1.66 16 20 C -0.10 -1.13 9.70 -39.58 -0.38 -1.52 16 21 C -0.13 -1.30 10.05 -39.58 -0.40 -1.70 16 22 C -0.12 -1.17 10.05 -39.58 -0.40 -1.57 16 23 C -0.12 -1.32 10.05 -39.58 -0.40 -1.72 16 24 C -0.10 -1.15 9.70 -39.58 -0.38 -1.53 16 25 H 0.07 1.15 6.66 -51.93 -0.35 0.81 16 26 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 28 H 0.07 0.91 5.77 -51.93 -0.30 0.61 16 29 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.08 1.58 6.92 -51.93 -0.36 1.22 16 32 H 0.04 0.93 6.43 -51.93 -0.33 0.59 16 33 H 0.04 1.24 7.42 -51.93 -0.39 0.86 16 34 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 35 H 0.07 0.98 7.79 -51.93 -0.40 0.58 16 36 H 0.07 0.91 7.79 -51.93 -0.40 0.50 16 37 H 0.06 0.60 8.08 -51.93 -0.42 0.18 16 38 H 0.06 0.58 8.09 -51.93 -0.42 0.16 16 39 H 0.12 1.26 8.06 -52.48 -0.42 0.83 16 40 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 41 H 0.12 0.91 8.06 -52.49 -0.42 0.48 16 42 H 0.12 1.02 8.06 -52.49 -0.42 0.59 16 43 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 LS Contribution 358.50 15.07 5.40 5.40 Total: -1.00 -34.86 358.50 -8.95 -43.82 By element: Atomic # 1 Polarization: 5.89 SS G_CDS: -6.71 Total: -0.82 kcal Atomic # 6 Polarization: -3.34 SS G_CDS: -2.18 Total: -5.53 kcal Atomic # 7 Polarization: -39.17 SS G_CDS: 0.34 Total: -38.83 kcal Atomic # 8 Polarization: -20.22 SS G_CDS: -0.77 Total: -20.99 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -34.86 -8.95 -43.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404071229.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.670 kcal (2) G-P(sol) polarization free energy of solvation -34.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds