Wall clock time and date at job start Tue Mar 31 2020 06:37:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47215 * 2 1 4 4 N 1.46501 * 109.47157 * 120.00673 * 2 1 3 5 5 C 1.46506 * 119.99843 * 299.99513 * 4 2 1 6 6 C 1.50704 * 109.47117 * 270.00636 * 5 4 2 7 7 H 1.07998 * 119.99746 * 359.97438 * 6 5 4 8 8 C 1.37869 * 120.00085 * 179.97438 * 6 5 4 9 9 N 1.31518 * 120.00187 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 120.00363 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.46906 * 0.02562 * 10 8 6 12 12 H 1.48504 * 109.46871 * 119.99899 * 10 8 6 13 13 H 1.48494 * 109.47357 * 240.00379 * 10 8 6 14 14 C 1.34768 * 120.00379 * 119.99948 * 4 2 1 15 15 O 1.21285 * 120.00294 * 179.97438 * 14 4 2 16 16 C 1.50705 * 119.99883 * 359.97438 * 14 4 2 17 17 O 1.42903 * 109.47122 * 180.02562 * 16 14 4 18 18 C 1.42893 * 113.99793 * 180.02562 * 17 16 14 19 19 C 1.50707 * 109.47070 * 179.97438 * 18 17 16 20 20 C 1.38238 * 119.99792 * 89.99993 * 19 18 17 21 21 C 1.38235 * 119.99712 * 179.97438 * 20 19 18 22 22 C 1.38234 * 120.00220 * 359.97124 * 21 20 19 23 23 C 1.38233 * 120.00037 * 0.28719 * 22 21 20 24 24 C 1.38234 * 120.00179 * 269.97930 * 19 18 17 25 25 H 1.09001 * 109.47029 * 299.99699 * 1 2 3 26 26 H 1.08996 * 109.47030 * 59.99769 * 1 2 3 27 27 H 1.08998 * 109.47248 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47029 * 240.00301 * 2 1 3 29 29 H 1.09002 * 109.46833 * 179.97438 * 3 2 1 30 30 H 1.08996 * 109.47310 * 300.00059 * 3 2 1 31 31 H 1.09001 * 109.46876 * 60.00208 * 3 2 1 32 32 H 1.08997 * 109.46902 * 29.99926 * 5 4 2 33 33 H 1.08990 * 109.47369 * 150.00151 * 5 4 2 34 34 H 0.96997 * 120.00729 * 179.97438 * 9 8 6 35 35 H 1.09005 * 109.47119 * 60.00082 * 16 14 4 36 36 H 1.08993 * 109.47044 * 300.00277 * 16 14 4 37 37 H 1.09005 * 109.47744 * 60.00256 * 18 17 16 38 38 H 1.09000 * 109.47353 * 299.99456 * 18 17 16 39 39 H 1.08005 * 120.00068 * 359.97438 * 20 19 18 40 40 H 1.07999 * 119.99770 * 179.97438 * 21 20 19 41 41 H 1.08002 * 119.99744 * 180.02562 * 22 21 20 42 42 H 1.07998 * 120.00395 * 179.72811 * 23 22 21 43 43 H 1.07999 * 119.99968 * 359.97438 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0184 -0.6908 1.1961 5 6 1.6645 -0.1903 2.5268 6 6 2.7033 0.8017 2.9830 7 1 3.5432 1.0356 2.3457 8 6 2.5813 1.4106 4.2139 9 7 1.5582 1.1262 4.9898 10 14 3.8692 2.6396 4.7798 11 1 4.9106 2.7836 3.7309 12 1 3.2251 3.9558 5.0212 13 1 4.4955 2.1570 6.0367 14 6 2.7932 -1.7865 1.0724 15 8 3.1979 -2.3581 2.0626 16 6 3.1568 -2.3016 -0.2964 17 8 3.9780 -3.4638 -0.1654 18 6 4.3813 -4.0340 -1.4120 19 6 5.2388 -5.2465 -1.1558 20 6 4.6546 -6.4939 -1.0383 21 6 5.4412 -7.6061 -0.8038 22 6 6.8120 -7.4712 -0.6874 23 6 7.3956 -6.2232 -0.7995 24 6 6.6095 -5.1115 -1.0387 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 3.1301 1.4424 0.0005 30 1 1.6768 1.9563 -0.8899 31 1 1.6767 1.9563 0.8900 32 1 0.6906 0.2972 2.4844 33 1 1.6239 -1.0227 3.2291 34 1 1.4725 1.5542 5.8560 35 1 3.7016 -1.5309 -0.8418 36 1 2.2483 -2.5586 -0.8410 37 1 4.9521 -3.2993 -1.9800 38 1 3.4984 -4.3265 -1.9803 39 1 3.5836 -6.5994 -1.1297 40 1 4.9847 -8.5806 -0.7116 41 1 7.4265 -8.3403 -0.5046 42 1 8.4662 -6.1171 -0.7042 43 1 7.0660 -4.1371 -1.1312 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000404071229.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:48 Heat of formation + Delta-G solvation = -77.489028 kcal Electronic energy + Delta-G solvation = -22953.140528 eV Core-core repulsion = 19576.624391 eV Total energy + Delta-G solvation = -3376.516137 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.96097 -40.18610 -38.44151 -37.44200 -34.94354 -32.99281 -32.43337 -31.79600 -30.51256 -28.31531 -27.89865 -26.58311 -24.62706 -23.48914 -22.75116 -22.24657 -19.80364 -18.62597 -18.53803 -17.63463 -17.50933 -17.27616 -16.74796 -16.28743 -16.09717 -15.86489 -15.23104 -14.97601 -14.85086 -14.33870 -14.24052 -14.14494 -13.90720 -13.66235 -13.34984 -13.26719 -13.04000 -12.94727 -12.79255 -12.73173 -12.50966 -12.22222 -12.09434 -11.92287 -11.87153 -11.65079 -11.51176 -10.70703 -10.61820 -10.54744 -9.82601 -9.76327 -9.44932 -8.19837 -6.31669 0.32016 0.49565 1.35009 1.38055 1.49022 1.77072 2.02067 2.39351 2.75408 3.09891 3.22713 3.63980 3.91722 3.95999 3.96772 4.14503 4.16752 4.23854 4.28442 4.31929 4.39107 4.42191 4.43088 4.64611 4.76640 4.83580 4.89070 5.00888 5.06642 5.07357 5.12771 5.14861 5.22780 5.44939 5.53701 5.59104 5.59616 5.64358 5.66417 5.85494 6.08178 6.10615 6.14490 6.74195 6.80816 7.30999 7.48562 8.87918 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.017781 B = 0.003506 C = 0.003177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1574.370384 B = 7983.608425 C = 8810.998489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.123 3.877 3 C -0.153 4.153 4 N -0.594 5.594 5 C 0.265 3.735 6 C -0.526 4.526 7 H 0.054 0.946 8 C 0.005 3.995 9 N -0.931 5.931 10 Si 0.963 3.037 11 H -0.267 1.267 12 H -0.269 1.269 13 H -0.285 1.285 14 C 0.491 3.509 15 O -0.590 6.590 16 C 0.057 3.943 17 O -0.394 6.394 18 C 0.096 3.904 19 C -0.111 4.111 20 C -0.114 4.114 21 C -0.133 4.133 22 C -0.121 4.121 23 C -0.134 4.134 24 C -0.116 4.116 25 H 0.037 0.963 26 H 0.100 0.900 27 H 0.057 0.943 28 H 0.118 0.882 29 H 0.043 0.957 30 H 0.093 0.907 31 H 0.043 0.957 32 H 0.030 0.970 33 H -0.012 1.012 34 H 0.265 0.735 35 H 0.105 0.895 36 H 0.112 0.888 37 H 0.077 0.923 38 H 0.082 0.918 39 H 0.132 0.868 40 H 0.144 0.856 41 H 0.146 0.854 42 H 0.142 0.858 43 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.573 -10.098 -20.661 23.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.021 3.979 3 C -0.211 4.211 4 N -0.327 5.327 5 C 0.143 3.857 6 C -0.565 4.565 7 H 0.073 0.927 8 C -0.194 4.194 9 N -0.571 5.571 10 Si 0.787 3.213 11 H -0.191 1.191 12 H -0.194 1.194 13 H -0.211 1.211 14 C 0.279 3.721 15 O -0.470 6.470 16 C -0.022 4.022 17 O -0.314 6.314 18 C 0.021 3.979 19 C -0.111 4.111 20 C -0.132 4.132 21 C -0.151 4.151 22 C -0.139 4.139 23 C -0.152 4.152 24 C -0.134 4.134 25 H 0.057 0.943 26 H 0.118 0.882 27 H 0.076 0.924 28 H 0.135 0.865 29 H 0.062 0.938 30 H 0.112 0.888 31 H 0.062 0.938 32 H 0.048 0.952 33 H 0.006 0.994 34 H 0.074 0.926 35 H 0.123 0.877 36 H 0.130 0.870 37 H 0.096 0.904 38 H 0.100 0.900 39 H 0.150 0.850 40 H 0.162 0.838 41 H 0.164 0.836 42 H 0.160 0.840 43 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 4.738 -10.410 -19.823 22.886 hybrid contribution 0.376 0.774 1.006 1.324 sum 5.114 -9.636 -18.817 21.750 Atomic orbital electron populations 1.22133 0.94060 1.02351 1.02963 1.21498 0.95467 0.94187 0.86795 1.22094 1.00666 0.95705 1.02624 1.48344 1.49134 1.26534 1.08700 1.18661 0.95435 0.92507 0.79048 1.21700 1.08958 1.23434 1.02397 0.92746 1.25820 0.97859 0.99183 0.96494 1.70060 1.31300 1.44619 1.11122 0.85439 0.79053 0.78722 0.78042 1.19096 1.19411 1.21144 1.21112 0.78582 0.80622 0.91794 1.90662 1.54696 1.59575 1.42110 1.22324 0.97261 0.89494 0.93107 1.88089 1.69514 1.43024 1.30760 1.21591 0.98013 0.92973 0.85317 1.19845 0.94309 0.94566 1.02403 1.21347 1.00685 0.92390 0.98773 1.21488 0.94342 0.99349 0.99904 1.21560 0.95376 0.98221 0.98768 1.21477 1.01023 0.92699 0.99987 1.21341 0.93447 0.99726 0.98905 0.94333 0.88157 0.92386 0.86462 0.93780 0.88842 0.93784 0.95182 0.99350 0.92607 0.87738 0.87010 0.90446 0.90019 0.85047 0.83804 0.83588 0.84002 0.85405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.13 9.17 71.98 0.66 -3.47 16 2 C 0.12 3.63 3.17 44.99 0.14 3.77 16 3 C -0.15 -4.63 8.47 71.98 0.61 -4.02 16 4 N -0.59 -25.40 2.39 -802.13 -1.91 -27.31 16 5 C 0.26 14.46 4.60 85.63 0.39 14.85 16 6 C -0.53 -30.50 7.83 25.60 0.20 -30.30 16 7 H 0.05 3.13 7.63 -2.91 -0.02 3.11 16 8 C 0.00 0.28 5.46 84.65 0.46 0.74 16 9 N -0.93 -57.27 13.29 21.44 0.28 -56.98 16 10 Si 0.96 45.84 29.54 68.60 2.03 47.86 16 11 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 12 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 13 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 14 C 0.49 21.63 7.75 87.66 0.68 22.31 16 15 O -0.59 -33.71 16.08 15.99 0.26 -33.46 16 16 C 0.06 1.68 4.73 71.24 0.34 2.01 16 17 O -0.39 -13.14 9.86 -129.94 -1.28 -14.42 16 18 C 0.10 2.17 6.06 71.24 0.43 2.60 16 19 C -0.11 -2.71 5.51 -19.86 -0.11 -2.82 16 20 C -0.11 -2.55 9.70 22.27 0.22 -2.33 16 21 C -0.13 -2.57 10.05 22.27 0.22 -2.35 16 22 C -0.12 -2.23 10.05 22.27 0.22 -2.00 16 23 C -0.13 -2.67 10.05 22.27 0.22 -2.45 16 24 C -0.12 -2.69 9.70 22.27 0.22 -2.47 16 25 H 0.04 1.25 6.66 -2.39 -0.02 1.24 16 26 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 27 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 28 H 0.12 2.43 5.77 -2.39 -0.01 2.41 16 29 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.09 1.99 8.14 -2.39 -0.02 1.98 16 31 H 0.04 1.67 6.92 -2.39 -0.02 1.65 16 32 H 0.03 1.66 6.43 -2.39 -0.02 1.64 16 33 H -0.01 -0.75 7.42 -2.39 -0.02 -0.77 16 34 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 35 H 0.10 2.40 7.79 -2.38 -0.02 2.38 16 36 H 0.11 2.36 7.79 -2.39 -0.02 2.34 16 37 H 0.08 1.39 8.08 -2.38 -0.02 1.37 16 38 H 0.08 1.39 8.09 -2.39 -0.02 1.37 16 39 H 0.13 2.55 8.06 -2.91 -0.02 2.53 16 40 H 0.14 2.03 8.06 -2.91 -0.02 2.00 16 41 H 0.15 1.83 8.06 -2.91 -0.02 1.81 16 42 H 0.14 2.13 8.06 -2.91 -0.02 2.11 16 43 H 0.13 2.67 8.06 -2.91 -0.02 2.65 16 Total: -1.00 -82.35 358.50 5.26 -77.09 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: 0.98 Total: 13.14 kcal Atomic # 6 Polarization: -10.83 SS G_CDS: 4.91 Total: -5.92 kcal Atomic # 7 Polarization: -82.66 SS G_CDS: -1.63 Total: -84.29 kcal Atomic # 8 Polarization: -46.85 SS G_CDS: -1.02 Total: -47.87 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 2.03 Total: 47.86 kcal Total: -82.35 5.26 -77.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404071229.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.400 kcal (2) G-P(sol) polarization free energy of solvation -82.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds