Wall clock time and date at job start Tue Mar 31 2020 07:46:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 109.47213 * 2 1 4 4 O 1.42899 * 109.47433 * 179.97438 * 3 2 1 5 5 C 1.35893 * 117.00392 * 179.97438 * 4 3 2 6 6 C 1.38736 * 120.05957 * 180.02562 * 5 4 3 7 7 C 1.38138 * 119.94337 * 180.30421 * 6 5 4 8 8 C 1.38270 * 120.05794 * 359.46080 * 7 6 5 9 9 C 1.50697 * 119.94421 * 180.26220 * 8 7 6 10 10 C 1.53002 * 109.46967 * 270.25509 * 9 8 7 11 11 C 1.50702 * 109.46969 * 180.02562 * 10 9 8 12 12 O 1.21278 * 120.00124 * 359.97438 * 11 10 9 13 13 N 1.34781 * 119.99741 * 180.02562 * 11 10 9 14 14 C 1.46507 * 119.99943 * 179.97438 * 13 11 10 15 15 C 1.50689 * 109.46886 * 179.97438 * 14 13 11 16 16 H 1.08003 * 120.00785 * 359.97438 * 15 14 13 17 17 C 1.37883 * 119.99750 * 180.02562 * 15 14 13 18 18 N 1.31513 * 120.00317 * 359.97438 * 17 15 14 19 19 Si 1.86806 * 119.99936 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47128 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.46888 * 120.00120 * 19 17 15 22 22 H 1.48500 * 109.46961 * 239.99948 * 19 17 15 23 23 C 1.38259 * 120.10998 * 0.51383 * 8 7 6 24 24 C 1.38146 * 120.05869 * 359.76954 * 23 8 7 25 25 H 1.08998 * 109.47451 * 59.99451 * 1 2 3 26 26 H 1.09000 * 109.47552 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.47061 * 300.00369 * 1 2 3 28 28 H 1.08994 * 109.47469 * 240.00013 * 2 1 3 29 29 H 1.09001 * 109.47551 * 119.99600 * 2 1 3 30 30 H 1.09002 * 109.47184 * 60.00229 * 3 2 1 31 31 H 1.09001 * 109.46987 * 299.99936 * 3 2 1 32 32 H 1.08002 * 120.02291 * 0.02562 * 6 5 4 33 33 H 1.08004 * 119.96766 * 179.69880 * 7 6 5 34 34 H 1.08999 * 109.47575 * 30.25213 * 9 8 7 35 35 H 1.09002 * 109.47295 * 150.25537 * 9 8 7 36 36 H 1.08997 * 109.47017 * 299.99496 * 10 9 8 37 37 H 1.09003 * 109.47237 * 60.00435 * 10 9 8 38 38 H 0.96995 * 119.99831 * 359.97438 * 13 11 10 39 39 H 1.09002 * 109.46650 * 300.00149 * 14 13 11 40 40 H 1.08994 * 109.46582 * 59.99850 * 14 13 11 41 41 H 0.96994 * 120.00737 * 179.97438 * 18 17 15 42 42 H 1.08006 * 119.97187 * 179.74376 * 23 8 7 43 43 H 1.07993 * 120.03340 * 179.97438 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4690 1.4426 0.0006 5 6 4.0859 2.6534 0.0001 6 6 5.4713 2.7274 0.0001 7 6 6.0960 3.9594 0.0060 8 6 5.3418 5.1183 0.0007 9 6 6.0260 6.4610 0.0011 10 6 6.2571 6.9152 1.4438 11 6 6.9407 8.2582 1.4443 12 8 7.2164 8.7987 0.3942 13 7 7.2466 8.8582 2.6117 14 6 7.9117 10.1636 2.6122 15 6 8.1391 10.6109 4.0332 16 1 7.8198 9.9856 4.8539 17 6 8.7539 11.8189 4.2856 18 7 9.1423 12.5806 3.2863 19 14 9.0352 12.3738 6.0470 20 1 8.5101 11.3447 6.9800 21 1 10.4899 12.5589 6.2813 22 1 8.3288 13.6590 6.2799 23 6 3.9611 5.0473 0.0001 24 6 3.3314 3.8177 0.0001 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8933 -0.5138 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 1.6767 1.9564 0.8900 31 1 1.6766 1.9563 -0.8900 32 1 6.0608 1.8224 0.0001 33 1 7.1745 4.0175 0.0110 34 1 6.9841 6.3809 -0.5123 35 1 5.3982 7.1890 -0.5128 36 1 5.2990 6.9955 1.9573 37 1 6.8850 6.1873 1.9577 38 1 7.0264 8.4257 3.4516 39 1 8.8696 10.0834 2.0984 40 1 7.2836 10.8914 2.0987 41 1 9.5745 13.4306 3.4638 42 1 3.3741 5.9540 0.0001 43 1 2.2529 3.7627 0.0001 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000427652477.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:46:35 Heat of formation + Delta-G solvation = -82.430958 kcal Electronic energy + Delta-G solvation = -21505.246850 eV Core-core repulsion = 18128.516415 eV Total energy + Delta-G solvation = -3376.730435 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.38597 -38.92813 -37.93927 -34.55876 -34.17604 -33.14179 -32.28740 -31.17124 -29.31186 -27.37171 -26.74456 -24.26623 -23.27366 -22.32391 -21.63460 -20.83661 -19.53571 -18.39935 -17.11604 -16.63453 -16.35832 -15.87984 -15.18022 -15.10780 -15.03310 -14.54314 -14.37836 -14.23215 -14.15317 -13.62544 -13.05166 -13.01531 -12.80976 -12.66050 -12.53020 -12.12551 -11.95417 -11.69278 -11.58487 -11.47517 -11.30707 -11.05773 -10.93953 -10.89807 -10.84826 -10.69224 -10.31070 -9.37146 -9.13678 -9.03650 -8.73222 -8.18080 -7.85708 -6.16268 -4.23042 1.20805 1.28769 2.89020 3.23603 3.30686 3.33864 3.42156 3.60197 4.14732 4.38426 4.40370 4.41346 4.67741 4.70993 4.74404 4.92209 4.95342 4.96079 5.13221 5.19773 5.22755 5.24936 5.29813 5.40732 5.47516 5.52187 5.58019 5.63535 5.73559 5.84520 5.90761 6.05760 6.15035 6.24031 6.31391 6.62245 6.65235 7.21682 7.32560 7.46825 7.53220 7.68103 7.98082 8.65678 8.79425 9.13661 9.43859 10.94001 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.032249 B = 0.002068 C = 0.002008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.031340 B =13537.125142 C =13938.682755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.124 4.124 3 C 0.059 3.941 4 O -0.319 6.319 5 C 0.120 3.880 6 C -0.150 4.150 7 C -0.077 4.077 8 C -0.112 4.112 9 C -0.061 4.061 10 C -0.135 4.135 11 C 0.496 3.504 12 O -0.559 6.559 13 N -0.714 5.714 14 C 0.248 3.752 15 C -0.543 4.543 16 H 0.063 0.937 17 C 0.063 3.937 18 N -0.886 5.886 19 Si 0.904 3.096 20 H -0.272 1.272 21 H -0.282 1.282 22 H -0.282 1.282 23 C -0.076 4.076 24 C -0.207 4.207 25 H 0.058 0.942 26 H 0.064 0.936 27 H 0.058 0.942 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.128 0.872 33 H 0.131 0.869 34 H 0.079 0.921 35 H 0.078 0.922 36 H 0.087 0.913 37 H 0.088 0.912 38 H 0.390 0.610 39 H 0.026 0.974 40 H 0.026 0.974 41 H 0.265 0.735 42 H 0.126 0.874 43 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.128 -24.197 -5.705 29.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.161 4.161 3 C -0.017 4.017 4 O -0.233 6.233 5 C 0.075 3.925 6 C -0.169 4.169 7 C -0.095 4.095 8 C -0.112 4.112 9 C -0.099 4.099 10 C -0.175 4.175 11 C 0.281 3.719 12 O -0.439 6.439 13 N -0.362 5.362 14 C 0.127 3.873 15 C -0.581 4.581 16 H 0.082 0.918 17 C -0.141 4.141 18 N -0.523 5.523 19 Si 0.731 3.269 20 H -0.196 1.196 21 H -0.208 1.208 22 H -0.208 1.208 23 C -0.095 4.095 24 C -0.226 4.226 25 H 0.077 0.923 26 H 0.083 0.917 27 H 0.077 0.923 28 H 0.091 0.909 29 H 0.092 0.908 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.146 0.854 33 H 0.148 0.852 34 H 0.098 0.902 35 H 0.097 0.903 36 H 0.105 0.895 37 H 0.106 0.894 38 H 0.223 0.777 39 H 0.044 0.956 40 H 0.044 0.956 41 H 0.075 0.925 42 H 0.144 0.856 43 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -14.749 -23.792 -6.484 28.734 hybrid contribution -0.128 0.382 1.404 1.460 sum -14.877 -23.411 -5.080 28.199 Atomic orbital electron populations 1.21695 0.94235 1.02552 1.02285 1.21483 0.96049 0.94891 1.03699 1.22858 0.78644 0.98725 1.01447 1.86028 1.21149 1.27250 1.88881 1.18978 0.92319 0.83950 0.97280 1.20412 0.91279 0.98631 1.06563 1.20935 1.00057 0.90912 0.97552 1.19939 0.93528 0.95512 1.02202 1.20272 1.01329 0.92273 0.95981 1.21665 1.01805 0.95667 0.98397 1.20539 0.79843 0.86965 0.84567 1.90652 1.55134 1.66567 1.31519 1.46491 1.59582 1.23124 1.07037 1.19102 0.92641 0.78198 0.97334 1.21281 1.40496 1.04733 0.91611 0.91848 1.24963 0.95111 0.96224 0.97775 1.69981 1.39447 1.12010 1.30866 0.86361 0.77985 0.78645 0.83917 1.19642 1.20790 1.20810 1.20900 0.94119 0.97042 0.97395 1.21206 0.99821 0.92399 1.09124 0.92338 0.91711 0.92310 0.90859 0.90823 0.92043 0.92086 0.85370 0.85160 0.90224 0.90310 0.89495 0.89402 0.77707 0.95565 0.95589 0.92513 0.85644 0.85744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.63 9.91 37.15 0.37 -0.26 16 2 C -0.12 -0.71 6.30 -26.73 -0.17 -0.87 16 3 C 0.06 0.42 4.74 37.16 0.18 0.60 16 4 O -0.32 -3.30 10.14 -19.40 -0.20 -3.50 16 5 C 0.12 1.31 6.69 -39.21 -0.26 1.05 16 6 C -0.15 -1.62 9.99 -39.43 -0.39 -2.01 16 7 C -0.08 -0.83 9.69 -39.61 -0.38 -1.22 16 8 C -0.11 -1.30 5.13 -104.60 -0.54 -1.83 16 9 C -0.06 -0.80 4.63 -27.88 -0.13 -0.93 16 10 C -0.14 -1.87 5.68 -27.88 -0.16 -2.03 16 11 C 0.50 9.80 7.83 -10.98 -0.09 9.71 16 12 O -0.56 -13.36 15.98 5.56 0.09 -13.27 16 13 N -0.71 -15.11 5.55 -61.47 -0.34 -15.45 16 14 C 0.25 6.64 5.43 -5.20 -0.03 6.61 16 15 C -0.54 -14.85 9.28 -34.44 -0.32 -15.16 16 16 H 0.06 1.62 7.60 -52.48 -0.40 1.23 16 17 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 18 N -0.89 -26.23 13.29 55.43 0.74 -25.50 16 19 Si 0.90 20.93 29.54 -169.99 -5.02 15.91 16 20 H -0.27 -6.10 7.11 56.52 0.40 -5.69 16 21 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 22 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 23 C -0.08 -0.83 9.69 -39.61 -0.38 -1.21 16 24 C -0.21 -2.11 9.04 -39.43 -0.36 -2.47 16 25 H 0.06 0.23 8.14 -51.93 -0.42 -0.20 16 26 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 27 H 0.06 0.23 8.14 -51.92 -0.42 -0.19 16 28 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.41 7.66 -51.93 -0.40 0.01 16 31 H 0.06 0.40 7.66 -51.93 -0.40 0.00 16 32 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 33 H 0.13 1.23 8.06 -52.48 -0.42 0.81 16 34 H 0.08 1.11 8.04 -51.93 -0.42 0.69 16 35 H 0.08 1.10 8.04 -51.93 -0.42 0.68 16 36 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.39 7.07 8.32 -40.82 -0.34 6.73 16 39 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 40 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 42 H 0.13 1.20 8.06 -52.48 -0.42 0.77 16 43 H 0.12 1.02 6.30 -52.49 -0.33 0.69 16 LS Contribution 364.70 15.07 5.50 5.50 Total: -1.00 -32.86 364.70 -8.91 -41.77 By element: Atomic # 1 Polarization: 9.83 SS G_CDS: -6.91 Total: 2.92 kcal Atomic # 6 Polarization: -5.62 SS G_CDS: -2.76 Total: -8.38 kcal Atomic # 7 Polarization: -41.34 SS G_CDS: 0.40 Total: -40.95 kcal Atomic # 8 Polarization: -16.66 SS G_CDS: -0.11 Total: -16.77 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -32.86 -8.91 -41.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427652477.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.666 kcal (2) G-P(sol) polarization free energy of solvation -32.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds