Wall clock time and date at job start Tue Mar 31 2020 07:46:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 109.47213 * 2 1 4 4 O 1.42899 * 109.47433 * 179.97438 * 3 2 1 5 5 C 1.35893 * 117.00392 * 179.97438 * 4 3 2 6 6 C 1.38736 * 120.05957 * 180.02562 * 5 4 3 7 7 C 1.38138 * 119.94337 * 180.30421 * 6 5 4 8 8 C 1.38270 * 120.05794 * 359.46080 * 7 6 5 9 9 C 1.50697 * 119.94421 * 180.26220 * 8 7 6 10 10 C 1.53002 * 109.46967 * 270.25509 * 9 8 7 11 11 C 1.50702 * 109.46969 * 180.02562 * 10 9 8 12 12 O 1.21278 * 120.00124 * 359.97438 * 11 10 9 13 13 N 1.34781 * 119.99741 * 180.02562 * 11 10 9 14 14 C 1.46507 * 119.99943 * 179.97438 * 13 11 10 15 15 C 1.50689 * 109.46886 * 179.97438 * 14 13 11 16 16 H 1.08003 * 120.00785 * 359.97438 * 15 14 13 17 17 C 1.37883 * 119.99750 * 180.02562 * 15 14 13 18 18 N 1.31513 * 120.00317 * 359.97438 * 17 15 14 19 19 Si 1.86806 * 119.99936 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47128 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.46888 * 120.00120 * 19 17 15 22 22 H 1.48500 * 109.46961 * 239.99948 * 19 17 15 23 23 C 1.38259 * 120.10998 * 0.51383 * 8 7 6 24 24 C 1.38146 * 120.05869 * 359.76954 * 23 8 7 25 25 H 1.08998 * 109.47451 * 59.99451 * 1 2 3 26 26 H 1.09000 * 109.47552 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.47061 * 300.00369 * 1 2 3 28 28 H 1.08994 * 109.47469 * 240.00013 * 2 1 3 29 29 H 1.09001 * 109.47551 * 119.99600 * 2 1 3 30 30 H 1.09002 * 109.47184 * 60.00229 * 3 2 1 31 31 H 1.09001 * 109.46987 * 299.99936 * 3 2 1 32 32 H 1.08002 * 120.02291 * 0.02562 * 6 5 4 33 33 H 1.08004 * 119.96766 * 179.69880 * 7 6 5 34 34 H 1.08999 * 109.47575 * 30.25213 * 9 8 7 35 35 H 1.09002 * 109.47295 * 150.25537 * 9 8 7 36 36 H 1.08997 * 109.47017 * 299.99496 * 10 9 8 37 37 H 1.09003 * 109.47237 * 60.00435 * 10 9 8 38 38 H 0.96995 * 119.99831 * 359.97438 * 13 11 10 39 39 H 1.09002 * 109.46650 * 300.00149 * 14 13 11 40 40 H 1.08994 * 109.46582 * 59.99850 * 14 13 11 41 41 H 0.96994 * 120.00737 * 179.97438 * 18 17 15 42 42 H 1.08006 * 119.97187 * 179.74376 * 23 8 7 43 43 H 1.07993 * 120.03340 * 179.97438 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4690 1.4426 0.0006 5 6 4.0859 2.6534 0.0001 6 6 5.4713 2.7274 0.0001 7 6 6.0960 3.9594 0.0060 8 6 5.3418 5.1183 0.0007 9 6 6.0260 6.4610 0.0011 10 6 6.2571 6.9152 1.4438 11 6 6.9407 8.2582 1.4443 12 8 7.2164 8.7987 0.3942 13 7 7.2466 8.8582 2.6117 14 6 7.9117 10.1636 2.6122 15 6 8.1391 10.6109 4.0332 16 1 7.8198 9.9856 4.8539 17 6 8.7539 11.8189 4.2856 18 7 9.1423 12.5806 3.2863 19 14 9.0352 12.3738 6.0470 20 1 8.5101 11.3447 6.9800 21 1 10.4899 12.5589 6.2813 22 1 8.3288 13.6590 6.2799 23 6 3.9611 5.0473 0.0001 24 6 3.3314 3.8177 0.0001 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8933 -0.5138 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 1.6767 1.9564 0.8900 31 1 1.6766 1.9563 -0.8900 32 1 6.0608 1.8224 0.0001 33 1 7.1745 4.0175 0.0110 34 1 6.9841 6.3809 -0.5123 35 1 5.3982 7.1890 -0.5128 36 1 5.2990 6.9955 1.9573 37 1 6.8850 6.1873 1.9577 38 1 7.0264 8.4257 3.4516 39 1 8.8696 10.0834 2.0984 40 1 7.2836 10.8914 2.0987 41 1 9.5745 13.4306 3.4638 42 1 3.3741 5.9540 0.0001 43 1 2.2529 3.7627 0.0001 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000427652477.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:46:34 Heat of formation + Delta-G solvation = -102.544246 kcal Electronic energy + Delta-G solvation = -21506.119028 eV Core-core repulsion = 18128.516415 eV Total energy + Delta-G solvation = -3377.602613 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.17957 -40.49576 -38.81329 -36.17169 -35.10867 -34.36449 -34.06512 -31.95693 -30.49692 -29.00800 -27.49269 -25.62233 -24.08835 -23.93106 -22.26695 -21.77639 -21.17264 -19.13079 -18.92388 -17.57327 -17.21936 -17.16928 -17.03505 -16.44983 -16.12191 -15.97109 -15.30024 -15.06999 -14.96327 -14.59181 -14.50482 -14.22203 -14.03404 -13.68312 -13.57923 -13.34289 -13.03761 -12.95960 -12.81067 -12.75016 -12.27447 -12.22000 -12.17175 -12.07107 -11.94114 -11.56909 -11.47435 -11.45309 -10.81643 -10.73890 -9.93249 -9.80603 -9.02061 -8.29392 -6.45996 0.41184 0.44773 1.43201 1.44266 1.57854 1.80940 2.23971 2.33106 2.60590 2.84655 3.05448 3.80544 3.83045 3.95425 3.96405 4.01173 4.11190 4.22375 4.29719 4.38588 4.40867 4.49314 4.55444 4.58679 4.71828 4.77510 4.83867 4.95847 5.12182 5.13472 5.15502 5.18260 5.23299 5.24945 5.32552 5.37897 5.42365 5.50410 5.71112 5.75033 5.85316 5.85914 6.48252 6.65826 6.93633 7.23669 7.52725 8.83012 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.032249 B = 0.002068 C = 0.002008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.031340 B =13537.125142 C =13938.682755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.121 4.121 3 C 0.051 3.949 4 O -0.332 6.332 5 C 0.112 3.888 6 C -0.160 4.160 7 C -0.079 4.079 8 C -0.121 4.121 9 C -0.054 4.054 10 C -0.118 4.118 11 C 0.493 3.507 12 O -0.605 6.605 13 N -0.710 5.710 14 C 0.264 3.736 15 C -0.556 4.556 16 H 0.084 0.916 17 C 0.003 3.997 18 N -0.931 5.931 19 Si 0.986 3.014 20 H -0.253 1.253 21 H -0.279 1.279 22 H -0.279 1.279 23 C -0.081 4.081 24 C -0.208 4.208 25 H 0.061 0.939 26 H 0.071 0.929 27 H 0.061 0.939 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.138 0.862 33 H 0.141 0.859 34 H 0.067 0.933 35 H 0.066 0.934 36 H 0.113 0.887 37 H 0.114 0.886 38 H 0.409 0.591 39 H -0.013 1.013 40 H -0.013 1.013 41 H 0.269 0.731 42 H 0.137 0.863 43 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.508 -25.909 -3.862 30.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.159 4.159 3 C -0.023 4.023 4 O -0.247 6.247 5 C 0.067 3.933 6 C -0.178 4.178 7 C -0.097 4.097 8 C -0.121 4.121 9 C -0.092 4.092 10 C -0.157 4.157 11 C 0.281 3.719 12 O -0.488 6.488 13 N -0.360 5.360 14 C 0.141 3.859 15 C -0.594 4.594 16 H 0.102 0.898 17 C -0.197 4.197 18 N -0.570 5.570 19 Si 0.809 3.191 20 H -0.176 1.176 21 H -0.204 1.204 22 H -0.205 1.205 23 C -0.099 4.099 24 C -0.227 4.227 25 H 0.081 0.919 26 H 0.090 0.910 27 H 0.080 0.920 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.156 0.844 33 H 0.159 0.841 34 H 0.086 0.914 35 H 0.085 0.915 36 H 0.132 0.868 37 H 0.132 0.868 38 H 0.244 0.756 39 H 0.005 0.995 40 H 0.005 0.995 41 H 0.077 0.923 42 H 0.155 0.845 43 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -16.161 -25.558 -4.625 30.590 hybrid contribution 0.257 0.846 0.735 1.150 sum -15.903 -24.712 -3.890 29.643 Atomic orbital electron populations 1.21688 0.92959 1.03185 1.02659 1.21494 0.97051 0.93916 1.03432 1.23100 0.77183 0.99889 1.02145 1.86021 1.22813 1.27107 1.88741 1.19187 0.92650 0.84480 0.96995 1.20603 0.91631 0.99007 1.06603 1.21071 1.00690 0.90742 0.97190 1.19780 0.93931 0.94603 1.03827 1.20143 1.00744 0.93097 0.95201 1.21646 1.02626 0.91847 0.99623 1.21627 0.78683 0.88495 0.83124 1.90632 1.56793 1.68209 1.33133 1.46257 1.59497 1.21490 1.08726 1.18547 0.90436 0.80143 0.96818 1.21671 1.40437 1.05301 0.91983 0.89799 1.26083 0.94486 0.96259 1.02866 1.70141 1.40372 1.12642 1.33828 0.85099 0.77865 0.78387 0.77781 1.17642 1.20449 1.20451 1.21073 0.93929 0.97831 0.97028 1.21409 1.00880 0.91858 1.08511 0.91946 0.90989 0.91950 0.91134 0.91123 0.91294 0.91341 0.84365 0.84111 0.91433 0.91482 0.86845 0.86789 0.75576 0.99517 0.99519 0.92260 0.84540 0.83811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 9.91 71.98 0.71 -0.25 16 2 C -0.12 -1.20 6.30 30.59 0.19 -1.01 16 3 C 0.05 0.65 4.74 71.98 0.34 1.00 16 4 O -0.33 -6.38 10.14 -92.34 -0.94 -7.32 16 5 C 0.11 2.27 6.69 22.51 0.15 2.42 16 6 C -0.16 -3.20 9.99 22.37 0.22 -2.98 16 7 C -0.08 -1.60 9.69 22.25 0.22 -1.38 16 8 C -0.12 -2.63 5.13 -19.85 -0.10 -2.73 16 9 C -0.05 -1.38 4.63 29.85 0.14 -1.24 16 10 C -0.12 -3.05 5.68 29.85 0.17 -2.88 16 11 C 0.49 19.50 7.83 87.66 0.69 20.19 16 12 O -0.61 -29.94 15.98 -3.02 -0.05 -29.99 16 13 N -0.71 -30.08 5.55 -466.79 -2.59 -32.67 16 14 C 0.26 14.63 5.43 85.63 0.46 15.09 16 15 C -0.56 -30.47 9.28 25.60 0.24 -30.23 16 16 H 0.08 4.15 7.60 -2.91 -0.02 4.13 16 17 C 0.00 0.14 5.46 84.66 0.46 0.60 16 18 N -0.93 -56.52 13.29 21.45 0.28 -56.23 16 19 Si 0.99 42.46 29.54 68.60 2.03 44.49 16 20 H -0.25 -10.05 7.11 99.48 0.71 -9.35 16 21 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 22 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 23 C -0.08 -1.59 9.69 22.25 0.22 -1.37 16 24 C -0.21 -3.82 9.04 22.37 0.20 -3.62 16 25 H 0.06 0.36 8.14 -2.39 -0.02 0.35 16 26 H 0.07 0.38 8.14 -2.39 -0.02 0.36 16 27 H 0.06 0.37 8.14 -2.38 -0.02 0.35 16 28 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.07 0.77 7.66 -2.39 -0.02 0.75 16 31 H 0.07 0.76 7.66 -2.39 -0.02 0.74 16 32 H 0.14 2.38 8.06 -2.91 -0.02 2.36 16 33 H 0.14 2.45 8.06 -2.91 -0.02 2.42 16 34 H 0.07 1.87 8.04 -2.39 -0.02 1.85 16 35 H 0.07 1.86 8.04 -2.39 -0.02 1.84 16 36 H 0.11 2.42 8.14 -2.39 -0.02 2.40 16 37 H 0.11 2.44 8.14 -2.39 -0.02 2.42 16 38 H 0.41 14.20 8.32 -92.71 -0.77 13.43 16 39 H -0.01 -0.82 8.14 -2.39 -0.02 -0.84 16 40 H -0.01 -0.82 8.14 -2.39 -0.02 -0.84 16 41 H 0.27 15.16 8.31 -92.71 -0.77 14.38 16 42 H 0.14 2.32 8.06 -2.91 -0.02 2.30 16 43 H 0.14 1.98 6.30 -2.91 -0.02 1.96 16 Total: -1.00 -73.11 364.70 3.27 -69.84 By element: Atomic # 1 Polarization: 20.05 SS G_CDS: 0.22 Total: 20.27 kcal Atomic # 6 Polarization: -12.70 SS G_CDS: 4.31 Total: -8.39 kcal Atomic # 7 Polarization: -86.60 SS G_CDS: -2.31 Total: -88.90 kcal Atomic # 8 Polarization: -36.32 SS G_CDS: -0.98 Total: -37.31 kcal Atomic # 14 Polarization: 42.46 SS G_CDS: 2.03 Total: 44.49 kcal Total: -73.11 3.27 -69.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427652477.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.701 kcal (2) G-P(sol) polarization free energy of solvation -73.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds