Wall clock time and date at job start Tue Mar 31 2020 06:51:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42898 * 114.00058 * 2 1 4 4 C 1.52998 * 109.47212 * 180.02562 * 3 2 1 5 5 C 1.53005 * 109.47168 * 300.00353 * 3 2 1 6 6 N 1.46496 * 109.46757 * 299.99789 * 5 3 2 7 7 C 1.34777 * 119.99773 * 180.02562 * 6 5 3 8 8 O 1.21280 * 120.00218 * 359.97438 * 7 6 5 9 9 C 1.50706 * 120.00072 * 179.97438 * 7 6 5 10 10 C 1.52997 * 109.47168 * 179.97438 * 9 7 6 11 11 C 1.50696 * 109.47162 * 180.02562 * 10 9 7 12 12 H 1.08005 * 119.99726 * 0.02562 * 11 10 9 13 13 C 1.37879 * 120.00084 * 180.02562 * 11 10 9 14 14 N 1.31513 * 120.00066 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99769 * 180.02562 * 13 11 10 16 16 H 1.48496 * 109.47474 * 359.97438 * 15 13 11 17 17 H 1.48504 * 109.47117 * 120.00374 * 15 13 11 18 18 H 1.48499 * 109.47026 * 239.99807 * 15 13 11 19 19 C 1.50706 * 109.47264 * 59.99985 * 3 2 1 20 20 C 1.38233 * 120.00109 * 209.72467 * 19 3 2 21 21 C 1.38238 * 119.99749 * 179.78525 * 20 19 3 22 22 C 1.38234 * 120.00078 * 0.44989 * 21 20 19 23 23 C 1.38238 * 120.00032 * 359.80374 * 22 21 20 24 24 C 1.38235 * 120.00123 * 359.97438 * 23 22 21 25 25 H 1.09002 * 109.47135 * 300.00289 * 1 2 3 26 26 H 1.08999 * 109.47235 * 59.99421 * 1 2 3 27 27 H 1.08997 * 109.47285 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.46785 * 299.99904 * 4 3 2 29 29 H 1.09002 * 109.47171 * 59.99883 * 4 3 2 30 30 H 1.09004 * 109.47223 * 180.02562 * 4 3 2 31 31 H 1.09001 * 109.47197 * 59.99961 * 5 3 2 32 32 H 1.09001 * 109.47101 * 180.02562 * 5 3 2 33 33 H 0.96997 * 120.00357 * 359.97438 * 6 5 3 34 34 H 1.09001 * 109.47294 * 300.00373 * 9 7 6 35 35 H 1.09001 * 109.46745 * 59.99961 * 9 7 6 36 36 H 1.09001 * 109.47306 * 300.00341 * 10 9 7 37 37 H 1.09001 * 109.46880 * 60.00581 * 10 9 7 38 38 H 0.96998 * 120.00025 * 179.97438 * 14 13 11 39 39 H 1.08004 * 119.99934 * 0.02562 * 20 19 3 40 40 H 1.07999 * 119.99925 * 180.27297 * 21 20 19 41 41 H 1.08002 * 120.00276 * 179.83134 * 22 21 20 42 42 H 1.08000 * 120.00524 * 180.02562 * 23 22 21 43 43 H 1.07999 * 120.00181 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 6 1.5587 2.0648 -1.2492 6 7 1.9910 1.3378 -2.4454 7 6 1.7032 1.8228 -3.6694 8 8 1.0859 2.8608 -3.7807 9 6 2.1483 1.0753 -4.9000 10 6 1.6967 1.8345 -6.1492 11 6 2.1413 1.0867 -7.3796 12 1 2.6907 0.1620 -7.2805 13 6 1.8468 1.5828 -8.6319 14 7 1.1783 2.7089 -8.7526 15 14 2.3973 0.6554 -10.1571 16 1 3.1273 -0.5730 -9.7530 17 1 1.2088 0.2822 -10.9655 18 1 3.2940 1.5201 -10.9655 19 6 1.5656 2.0534 1.2305 20 6 1.4490 3.4304 1.1979 21 6 1.0368 4.1159 2.3254 22 6 0.7502 3.4253 3.4880 23 6 0.8719 2.0488 3.5221 24 6 1.2796 1.3627 2.3934 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 3.8574 0.6436 0.8891 29 1 3.8567 0.6439 -0.8909 30 1 3.9788 2.1804 -0.0002 31 1 0.4721 2.1509 -1.2492 32 1 2.0024 3.0604 -1.2495 33 1 2.4850 0.5078 -2.3564 34 1 3.2349 0.9892 -4.8996 35 1 1.7050 0.0795 -4.9003 36 1 0.6101 1.9201 -6.1493 37 1 2.1398 2.8304 -6.1490 38 1 0.9714 3.0581 -9.6335 39 1 1.6762 3.9702 0.2905 40 1 0.9415 5.1914 2.2986 41 1 0.4309 3.9612 4.3697 42 1 0.6476 1.5091 4.4303 43 1 1.3750 0.2873 2.4201 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000452749228.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:57 Heat of formation + Delta-G solvation = -67.198466 kcal Electronic energy + Delta-G solvation = -23039.382542 eV Core-core repulsion = 19663.312637 eV Total energy + Delta-G solvation = -3376.069905 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.66995 -38.98031 -37.87164 -34.62884 -33.42175 -32.70447 -31.18558 -30.92785 -29.81527 -27.38551 -26.36340 -25.28903 -23.41493 -22.68885 -21.44791 -20.21521 -19.62818 -17.68914 -17.04479 -16.46627 -15.92809 -15.84964 -15.43767 -15.15456 -14.74481 -14.61973 -14.57139 -14.37144 -13.78151 -13.65257 -13.15624 -12.90658 -12.73475 -12.67217 -12.29612 -12.14450 -12.08345 -11.80685 -11.60336 -11.24739 -11.12765 -10.92865 -10.84403 -10.56608 -9.93489 -9.88359 -9.64286 -9.19129 -9.15015 -9.05191 -8.96010 -8.75387 -8.30467 -5.94514 -3.98619 1.02151 1.12795 3.27140 3.33670 3.34155 3.40946 3.44393 3.46874 3.71358 4.34094 4.42957 4.49548 4.71283 4.73940 4.78193 4.87711 5.18214 5.24130 5.27489 5.28889 5.40511 5.41194 5.45210 5.51298 5.59176 5.65226 5.72729 5.76669 5.85671 5.95168 6.17770 6.23402 6.24470 6.26488 6.28679 6.69743 6.71994 6.92607 6.96052 7.76821 7.88720 7.93029 8.09273 8.41013 8.81193 9.10357 9.64851 11.16521 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.034893 B = 0.002808 C = 0.002717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.255023 B = 9969.148142 C =10303.576048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.368 6.368 3 C 0.147 3.853 4 C -0.134 4.134 5 C 0.097 3.903 6 N -0.737 5.737 7 C 0.509 3.491 8 O -0.537 6.537 9 C -0.129 4.129 10 C 0.037 3.963 11 C -0.525 4.525 12 H 0.056 0.944 13 C 0.057 3.943 14 N -0.890 5.890 15 Si 0.892 3.108 16 H -0.273 1.273 17 H -0.284 1.284 18 H -0.284 1.284 19 C -0.109 4.109 20 C -0.110 4.110 21 C -0.119 4.119 22 C -0.119 4.119 23 C -0.124 4.124 24 C -0.100 4.100 25 H 0.046 0.954 26 H 0.049 0.951 27 H 0.087 0.913 28 H 0.067 0.933 29 H 0.071 0.929 30 H 0.075 0.925 31 H 0.069 0.931 32 H 0.075 0.925 33 H 0.400 0.600 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.023 0.977 37 H 0.023 0.977 38 H 0.260 0.740 39 H 0.128 0.872 40 H 0.124 0.876 41 H 0.121 0.879 42 H 0.122 0.878 43 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.345 -3.061 26.614 26.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.287 6.287 3 C 0.107 3.893 4 C -0.191 4.191 5 C -0.027 4.027 6 N -0.392 5.392 7 C 0.298 3.702 8 O -0.412 6.412 9 C -0.169 4.169 10 C -0.001 4.001 11 C -0.564 4.564 12 H 0.075 0.925 13 C -0.145 4.145 14 N -0.529 5.529 15 Si 0.720 3.280 16 H -0.197 1.197 17 H -0.210 1.210 18 H -0.210 1.210 19 C -0.110 4.110 20 C -0.128 4.128 21 C -0.137 4.137 22 C -0.137 4.137 23 C -0.142 4.142 24 C -0.118 4.118 25 H 0.065 0.935 26 H 0.067 0.933 27 H 0.105 0.895 28 H 0.086 0.914 29 H 0.090 0.910 30 H 0.094 0.906 31 H 0.087 0.913 32 H 0.093 0.907 33 H 0.236 0.764 34 H 0.098 0.902 35 H 0.098 0.902 36 H 0.041 0.959 37 H 0.042 0.958 38 H 0.070 0.930 39 H 0.146 0.854 40 H 0.142 0.858 41 H 0.139 0.861 42 H 0.140 0.860 43 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 0.925 -2.344 26.382 26.502 hybrid contribution 0.183 -0.550 -0.732 0.934 sum 1.109 -2.894 25.649 25.836 Atomic orbital electron populations 1.22881 0.80926 1.02855 1.00876 1.87955 1.20098 1.25953 1.94683 1.20549 0.94889 0.83179 0.90728 1.21765 0.90820 1.03167 1.03371 1.21850 1.00486 0.96050 0.84346 1.46111 1.60216 1.27758 1.05108 1.21584 0.78395 0.85699 0.84537 1.90664 1.39767 1.24045 1.86774 1.21856 1.01673 1.00178 0.93204 1.18899 0.97408 0.95282 0.88482 1.21269 1.35946 1.08147 0.91003 0.92543 1.25032 0.95244 0.95035 0.99149 1.70010 1.39653 1.19897 1.23330 0.86537 0.78373 0.79866 0.83193 1.19741 1.21034 1.21035 1.20250 1.00928 0.94178 0.95606 1.21212 0.99030 0.93633 0.98934 1.21174 0.99403 1.00101 0.93022 1.21202 0.99900 0.94500 0.98104 1.21152 1.00277 0.94471 0.98264 1.20998 0.98457 1.00360 0.92018 0.93536 0.93282 0.89455 0.91383 0.90970 0.90624 0.91295 0.90659 0.76441 0.90236 0.90248 0.95874 0.95839 0.93034 0.85400 0.85835 0.86123 0.86030 0.85457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 10.04 101.05 1.01 1.22 16 2 O -0.37 -4.00 9.28 -35.23 -0.33 -4.33 16 3 C 0.15 1.53 0.62 -91.77 -0.06 1.47 16 4 C -0.13 -1.23 8.65 37.16 0.32 -0.91 16 5 C 0.10 1.26 3.53 -4.04 -0.01 1.24 16 6 N -0.74 -10.68 5.15 -60.29 -0.31 -10.99 16 7 C 0.51 9.94 7.83 -10.98 -0.09 9.85 16 8 O -0.54 -12.78 15.98 5.56 0.09 -12.69 16 9 C -0.13 -2.66 5.64 -27.88 -0.16 -2.82 16 10 C 0.04 1.00 4.26 -27.89 -0.12 0.88 16 11 C -0.53 -15.04 9.11 -34.44 -0.31 -15.36 16 12 H 0.06 1.53 7.74 -52.48 -0.41 1.12 16 13 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 14 N -0.89 -27.66 13.29 55.43 0.74 -26.92 16 15 Si 0.89 21.83 29.54 -169.99 -5.02 16.81 16 16 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 17 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 18 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 19 C -0.11 -1.08 4.02 -104.62 -0.42 -1.50 16 20 C -0.11 -1.08 9.14 -39.58 -0.36 -1.45 16 21 C -0.12 -1.04 10.05 -39.58 -0.40 -1.43 16 22 C -0.12 -0.95 10.05 -39.58 -0.40 -1.34 16 23 C -0.12 -0.99 10.05 -39.58 -0.40 -1.39 16 24 C -0.10 -0.91 7.77 -39.58 -0.31 -1.22 16 25 H 0.05 0.44 6.04 -51.93 -0.31 0.12 16 26 H 0.05 0.56 6.42 -51.93 -0.33 0.23 16 27 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 28 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.07 0.65 6.86 -51.93 -0.36 0.30 16 30 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.07 0.98 6.54 -51.93 -0.34 0.64 16 32 H 0.08 0.99 6.51 -51.93 -0.34 0.66 16 33 H 0.40 4.92 7.19 -40.82 -0.29 4.62 16 34 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 35 H 0.08 1.51 8.14 -51.93 -0.42 1.08 16 36 H 0.02 0.69 8.10 -51.93 -0.42 0.26 16 37 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 38 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 39 H 0.13 1.24 6.17 -52.48 -0.32 0.92 16 40 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 41 H 0.12 0.70 8.06 -52.49 -0.42 0.28 16 42 H 0.12 0.73 8.06 -52.49 -0.42 0.30 16 43 H 0.13 1.09 7.39 -52.49 -0.39 0.70 16 LS Contribution 351.03 15.07 5.29 5.29 Total: -1.00 -34.30 351.03 -7.79 -42.09 By element: Atomic # 1 Polarization: 8.37 SS G_CDS: -6.45 Total: 1.92 kcal Atomic # 6 Polarization: -9.38 SS G_CDS: -1.79 Total: -11.17 kcal Atomic # 7 Polarization: -38.34 SS G_CDS: 0.43 Total: -37.91 kcal Atomic # 8 Polarization: -16.78 SS G_CDS: -0.24 Total: -17.02 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -34.30 -7.79 -42.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452749228.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.109 kcal (2) G-P(sol) polarization free energy of solvation -34.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds