Wall clock time and date at job start Tue Mar 31 2020 06:51:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42898 * 114.00058 * 2 1 4 4 C 1.52998 * 109.47212 * 180.02562 * 3 2 1 5 5 C 1.53005 * 109.47168 * 300.00353 * 3 2 1 6 6 N 1.46496 * 109.46757 * 299.99789 * 5 3 2 7 7 C 1.34777 * 119.99773 * 180.02562 * 6 5 3 8 8 O 1.21280 * 120.00218 * 359.97438 * 7 6 5 9 9 C 1.50706 * 120.00072 * 179.97438 * 7 6 5 10 10 C 1.52997 * 109.47168 * 179.97438 * 9 7 6 11 11 C 1.50696 * 109.47162 * 180.02562 * 10 9 7 12 12 H 1.08005 * 119.99726 * 0.02562 * 11 10 9 13 13 C 1.37879 * 120.00084 * 180.02562 * 11 10 9 14 14 N 1.31513 * 120.00066 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99769 * 180.02562 * 13 11 10 16 16 H 1.48496 * 109.47474 * 359.97438 * 15 13 11 17 17 H 1.48504 * 109.47117 * 120.00374 * 15 13 11 18 18 H 1.48499 * 109.47026 * 239.99807 * 15 13 11 19 19 C 1.50706 * 109.47264 * 59.99985 * 3 2 1 20 20 C 1.38233 * 120.00109 * 209.72467 * 19 3 2 21 21 C 1.38238 * 119.99749 * 179.78525 * 20 19 3 22 22 C 1.38234 * 120.00078 * 0.44989 * 21 20 19 23 23 C 1.38238 * 120.00032 * 359.80374 * 22 21 20 24 24 C 1.38235 * 120.00123 * 359.97438 * 23 22 21 25 25 H 1.09002 * 109.47135 * 300.00289 * 1 2 3 26 26 H 1.08999 * 109.47235 * 59.99421 * 1 2 3 27 27 H 1.08997 * 109.47285 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.46785 * 299.99904 * 4 3 2 29 29 H 1.09002 * 109.47171 * 59.99883 * 4 3 2 30 30 H 1.09004 * 109.47223 * 180.02562 * 4 3 2 31 31 H 1.09001 * 109.47197 * 59.99961 * 5 3 2 32 32 H 1.09001 * 109.47101 * 180.02562 * 5 3 2 33 33 H 0.96997 * 120.00357 * 359.97438 * 6 5 3 34 34 H 1.09001 * 109.47294 * 300.00373 * 9 7 6 35 35 H 1.09001 * 109.46745 * 59.99961 * 9 7 6 36 36 H 1.09001 * 109.47306 * 300.00341 * 10 9 7 37 37 H 1.09001 * 109.46880 * 60.00581 * 10 9 7 38 38 H 0.96998 * 120.00025 * 179.97438 * 14 13 11 39 39 H 1.08004 * 119.99934 * 0.02562 * 20 19 3 40 40 H 1.07999 * 119.99925 * 180.27297 * 21 20 19 41 41 H 1.08002 * 120.00276 * 179.83134 * 22 21 20 42 42 H 1.08000 * 120.00524 * 180.02562 * 23 22 21 43 43 H 1.07999 * 120.00181 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 6 1.5587 2.0648 -1.2492 6 7 1.9910 1.3378 -2.4454 7 6 1.7032 1.8228 -3.6694 8 8 1.0859 2.8608 -3.7807 9 6 2.1483 1.0753 -4.9000 10 6 1.6967 1.8345 -6.1492 11 6 2.1413 1.0867 -7.3796 12 1 2.6907 0.1620 -7.2805 13 6 1.8468 1.5828 -8.6319 14 7 1.1783 2.7089 -8.7526 15 14 2.3973 0.6554 -10.1571 16 1 3.1273 -0.5730 -9.7530 17 1 1.2088 0.2822 -10.9655 18 1 3.2940 1.5201 -10.9655 19 6 1.5656 2.0534 1.2305 20 6 1.4490 3.4304 1.1979 21 6 1.0368 4.1159 2.3254 22 6 0.7502 3.4253 3.4880 23 6 0.8719 2.0488 3.5221 24 6 1.2796 1.3627 2.3934 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 3.8574 0.6436 0.8891 29 1 3.8567 0.6439 -0.8909 30 1 3.9788 2.1804 -0.0002 31 1 0.4721 2.1509 -1.2492 32 1 2.0024 3.0604 -1.2495 33 1 2.4850 0.5078 -2.3564 34 1 3.2349 0.9892 -4.8996 35 1 1.7050 0.0795 -4.9003 36 1 0.6101 1.9201 -6.1493 37 1 2.1398 2.8304 -6.1490 38 1 0.9714 3.0581 -9.6335 39 1 1.6762 3.9702 0.2905 40 1 0.9415 5.1914 2.2986 41 1 0.4309 3.9612 4.3697 42 1 0.6476 1.5091 4.4303 43 1 1.3750 0.2873 2.4201 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000452749228.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:56 Heat of formation + Delta-G solvation = -89.684550 kcal Electronic energy + Delta-G solvation = -23040.357612 eV Core-core repulsion = 19663.312637 eV Total energy + Delta-G solvation = -3377.044975 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.57127 -40.37180 -38.72630 -35.86990 -35.51357 -33.75251 -32.89393 -31.82725 -30.58120 -28.73579 -27.34399 -26.87959 -24.33822 -23.66463 -22.98426 -21.35421 -20.91186 -18.89271 -18.44729 -17.77476 -17.14597 -16.98965 -16.65398 -16.37083 -16.27876 -15.91529 -15.53279 -15.31328 -14.77489 -14.68192 -14.43220 -14.19235 -14.13008 -13.60944 -13.43131 -13.32624 -13.22584 -12.98505 -12.84415 -12.73306 -12.44868 -12.33025 -11.96898 -11.92642 -11.64468 -11.61674 -11.28374 -10.88760 -10.63265 -10.57887 -10.11096 -9.84488 -9.71579 -8.17994 -6.31846 0.34563 0.46152 1.42389 1.43784 1.57219 1.69695 2.14887 2.43917 2.71322 2.83908 3.15081 3.51522 3.55168 3.86669 4.03238 4.07970 4.13528 4.27256 4.40056 4.44637 4.48802 4.53601 4.56453 4.58321 4.64929 4.69228 4.74069 4.81737 4.89614 5.03414 5.08087 5.12585 5.20529 5.38483 5.50792 5.51585 5.57409 5.60109 5.63443 5.85719 6.06098 6.11689 6.18057 6.57637 6.86764 7.31849 7.38459 8.94963 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.034893 B = 0.002808 C = 0.002717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.255023 B = 9969.148142 C =10303.576048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.372 6.372 3 C 0.156 3.844 4 C -0.134 4.134 5 C 0.098 3.902 6 N -0.711 5.711 7 C 0.512 3.488 8 O -0.589 6.589 9 C -0.119 4.119 10 C 0.042 3.958 11 C -0.541 4.541 12 H 0.076 0.924 13 C -0.008 4.008 14 N -0.938 5.938 15 Si 0.974 3.026 16 H -0.253 1.253 17 H -0.281 1.281 18 H -0.280 1.280 19 C -0.119 4.119 20 C -0.128 4.128 21 C -0.128 4.128 22 C -0.120 4.120 23 C -0.124 4.124 24 C -0.106 4.106 25 H 0.052 0.948 26 H 0.029 0.971 27 H 0.105 0.895 28 H 0.078 0.922 29 H 0.074 0.926 30 H 0.078 0.922 31 H 0.055 0.945 32 H 0.072 0.928 33 H 0.416 0.584 34 H 0.106 0.894 35 H 0.103 0.897 36 H -0.019 1.019 37 H -0.017 1.017 38 H 0.263 0.737 39 H 0.120 0.880 40 H 0.136 0.864 41 H 0.144 0.856 42 H 0.145 0.855 43 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.484 -5.194 28.085 28.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.290 6.290 3 C 0.116 3.884 4 C -0.191 4.191 5 C -0.027 4.027 6 N -0.365 5.365 7 C 0.300 3.700 8 O -0.469 6.469 9 C -0.158 4.158 10 C 0.005 3.995 11 C -0.579 4.579 12 H 0.094 0.906 13 C -0.205 4.205 14 N -0.578 5.578 15 Si 0.798 3.202 16 H -0.176 1.176 17 H -0.206 1.206 18 H -0.206 1.206 19 C -0.120 4.120 20 C -0.146 4.146 21 C -0.146 4.146 22 C -0.138 4.138 23 C -0.142 4.142 24 C -0.124 4.124 25 H 0.071 0.929 26 H 0.048 0.952 27 H 0.123 0.877 28 H 0.097 0.903 29 H 0.093 0.907 30 H 0.097 0.903 31 H 0.073 0.927 32 H 0.090 0.910 33 H 0.254 0.746 34 H 0.124 0.876 35 H 0.121 0.879 36 H 0.000 1.000 37 H 0.001 0.999 38 H 0.071 0.929 39 H 0.138 0.862 40 H 0.154 0.846 41 H 0.162 0.838 42 H 0.163 0.837 43 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 2.096 -4.528 27.906 28.348 hybrid contribution -0.213 0.154 -1.084 1.115 sum 1.882 -4.375 26.822 27.241 Atomic orbital electron populations 1.22931 0.80553 1.03806 1.00227 1.87950 1.20501 1.25981 1.94608 1.20464 0.95639 0.82800 0.89539 1.21801 0.89690 1.03623 1.04036 1.21958 0.99681 0.96336 0.84694 1.45796 1.58705 1.27843 1.04145 1.21352 0.77957 0.84906 0.85749 1.90652 1.42376 1.26308 1.87570 1.21632 1.03276 1.00102 0.90812 1.18688 0.94511 0.94323 0.92008 1.21744 1.35817 1.08764 0.91576 0.90596 1.26148 0.95120 0.95928 1.03348 1.70185 1.41190 1.22042 1.24411 0.85265 0.78003 0.78846 0.78078 1.17597 1.20639 1.20599 1.20203 1.01930 0.94171 0.95708 1.21272 1.00121 0.93907 0.99293 1.21413 0.99154 1.00968 0.93019 1.21527 0.99017 0.94755 0.98523 1.21469 0.99271 0.94707 0.98748 1.21113 0.98550 1.00696 0.92022 0.92926 0.95212 0.87706 0.90266 0.90722 0.90326 0.92709 0.91012 0.74648 0.87623 0.87920 1.00024 0.99857 0.92867 0.86242 0.84577 0.83792 0.83691 0.84893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.39 10.04 113.37 1.14 1.53 16 2 O -0.37 -7.50 9.28 -148.98 -1.38 -8.89 16 3 C 0.16 3.10 0.62 -11.54 -0.01 3.09 16 4 C -0.13 -2.25 8.65 71.98 0.62 -1.63 16 5 C 0.10 2.54 3.53 86.38 0.30 2.85 16 6 N -0.71 -20.25 5.15 -463.05 -2.38 -22.63 16 7 C 0.51 20.28 7.83 87.66 0.69 20.97 16 8 O -0.59 -29.45 15.98 -3.03 -0.05 -29.49 16 9 C -0.12 -4.85 5.64 29.85 0.17 -4.68 16 10 C 0.04 2.39 4.26 29.85 0.13 2.52 16 11 C -0.54 -31.11 9.11 25.60 0.23 -30.88 16 12 H 0.08 3.98 7.74 -2.91 -0.02 3.96 16 13 C -0.01 -0.48 5.46 84.66 0.46 -0.02 16 14 N -0.94 -60.06 13.29 21.45 0.28 -59.78 16 15 Si 0.97 44.67 29.54 68.60 2.03 46.69 16 16 H -0.25 -10.67 7.11 99.48 0.71 -9.96 16 17 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 18 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 19 C -0.12 -2.27 4.02 -19.86 -0.08 -2.35 16 20 C -0.13 -2.49 9.14 22.27 0.20 -2.29 16 21 C -0.13 -2.09 10.05 22.27 0.22 -1.87 16 22 C -0.12 -1.65 10.05 22.27 0.22 -1.43 16 23 C -0.12 -1.70 10.05 22.27 0.22 -1.47 16 24 C -0.11 -1.73 7.77 22.27 0.17 -1.56 16 25 H 0.05 0.93 6.04 -2.39 -0.01 0.91 16 26 H 0.03 0.67 6.42 -2.39 -0.02 0.66 16 27 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 28 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 29 H 0.07 1.19 6.86 -2.39 -0.02 1.18 16 30 H 0.08 1.27 8.14 -2.38 -0.02 1.25 16 31 H 0.05 1.62 6.54 -2.39 -0.02 1.60 16 32 H 0.07 1.96 6.51 -2.39 -0.02 1.94 16 33 H 0.42 9.45 7.19 -92.71 -0.67 8.78 16 34 H 0.11 3.77 8.14 -2.39 -0.02 3.75 16 35 H 0.10 3.73 8.14 -2.39 -0.02 3.71 16 36 H -0.02 -1.19 8.10 -2.39 -0.02 -1.21 16 37 H -0.02 -1.08 8.10 -2.39 -0.02 -1.10 16 38 H 0.26 15.68 8.31 -92.71 -0.77 14.91 16 39 H 0.12 2.43 6.17 -2.91 -0.02 2.42 16 40 H 0.14 1.77 8.06 -2.91 -0.02 1.75 16 41 H 0.14 1.26 8.06 -2.91 -0.02 1.24 16 42 H 0.15 1.26 8.06 -2.91 -0.02 1.24 16 43 H 0.13 1.98 7.39 -2.91 -0.02 1.96 16 Total: -1.00 -76.94 351.03 3.54 -73.40 By element: Atomic # 1 Polarization: 17.57 SS G_CDS: 0.34 Total: 17.91 kcal Atomic # 6 Polarization: -21.92 SS G_CDS: 4.70 Total: -17.21 kcal Atomic # 7 Polarization: -80.31 SS G_CDS: -2.10 Total: -82.41 kcal Atomic # 8 Polarization: -36.95 SS G_CDS: -1.43 Total: -38.38 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.69 kcal Total: -76.94 3.54 -73.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452749228.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.286 kcal (2) G-P(sol) polarization free energy of solvation -76.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds