Wall clock time and date at job start Tue Mar 31 2020 06:52:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42894 * 113.99994 * 2 1 4 4 C 1.53001 * 109.47178 * 180.02562 * 3 2 1 5 5 C 1.52997 * 109.47499 * 59.99673 * 3 2 1 6 6 N 1.46503 * 109.47127 * 65.00086 * 5 3 2 7 7 C 1.34774 * 120.00595 * 179.97438 * 6 5 3 8 8 O 1.21282 * 119.99562 * 359.97438 * 7 6 5 9 9 C 1.50698 * 120.00244 * 180.02562 * 7 6 5 10 10 C 1.53000 * 109.47130 * 180.02562 * 9 7 6 11 11 C 1.50698 * 109.47333 * 179.97438 * 10 9 7 12 12 H 1.08002 * 119.99744 * 0.02562 * 11 10 9 13 13 C 1.37870 * 120.00081 * 179.97438 * 11 10 9 14 14 N 1.31517 * 119.99915 * 180.02562 * 13 11 10 15 15 Si 1.86800 * 120.00270 * 0.02562 * 13 11 10 16 16 H 1.48497 * 109.47220 * 89.99917 * 15 13 11 17 17 H 1.48497 * 109.47240 * 209.99799 * 15 13 11 18 18 H 1.48499 * 109.46833 * 329.99943 * 15 13 11 19 19 C 1.50706 * 109.47283 * 299.99700 * 3 2 1 20 20 C 1.38237 * 119.99744 * 330.00765 * 19 3 2 21 21 C 1.38235 * 119.99712 * 180.02562 * 20 19 3 22 22 C 1.38234 * 120.00220 * 359.94731 * 21 20 19 23 23 C 1.38233 * 120.00037 * 0.28719 * 22 21 20 24 24 C 1.38234 * 120.00223 * 150.01975 * 19 3 2 25 25 H 1.08999 * 109.46857 * 59.99738 * 1 2 3 26 26 H 1.08996 * 109.47108 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46757 * 300.00116 * 1 2 3 28 28 H 1.08993 * 109.47154 * 179.97438 * 4 3 2 29 29 H 1.09001 * 109.46664 * 299.99653 * 4 3 2 30 30 H 1.08998 * 109.47218 * 59.99158 * 4 3 2 31 31 H 1.09007 * 109.47277 * 184.99609 * 5 3 2 32 32 H 1.08997 * 109.47386 * 305.00452 * 5 3 2 33 33 H 0.97006 * 119.99700 * 0.02562 * 6 5 3 34 34 H 1.09007 * 109.46732 * 299.99767 * 9 7 6 35 35 H 1.09000 * 109.47465 * 59.99985 * 9 7 6 36 36 H 1.08998 * 109.46860 * 300.00317 * 10 9 7 37 37 H 1.09009 * 109.47098 * 59.99764 * 10 9 7 38 38 H 0.97007 * 119.99461 * 180.02562 * 14 13 11 39 39 H 1.08005 * 120.00088 * 359.97438 * 20 19 3 40 40 H 1.07999 * 119.99770 * 179.97438 * 21 20 19 41 41 H 1.08002 * 119.99744 * 180.02562 * 22 21 20 42 42 H 1.07998 * 120.00395 * 179.72811 * 23 22 21 43 43 H 1.07998 * 119.99975 * 0.02562 * 24 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 1.5588 2.0648 1.2491 6 7 2.0923 1.4030 2.4424 7 6 1.8227 1.8997 3.6659 8 8 1.1386 2.8948 3.7791 9 6 2.3720 1.2193 4.8932 10 6 1.9205 1.9785 6.1424 11 6 2.4692 1.2978 7.3698 12 1 3.0794 0.4124 7.2689 13 6 2.1932 1.8059 8.6214 14 7 2.6726 1.2120 9.6925 15 14 1.1384 3.3376 8.7959 16 1 -0.2889 2.9451 8.9132 17 1 1.5478 4.0846 10.0123 18 1 1.3179 4.2009 7.6010 19 6 1.5657 2.0533 -1.2305 20 6 1.2798 1.3627 -2.3934 21 6 0.8725 2.0487 -3.5223 22 6 0.7500 3.4252 -3.4880 23 6 1.0405 4.1162 -2.3265 24 6 1.4440 3.4298 -1.1965 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 3.9788 2.1803 -0.0011 29 1 3.8574 0.6436 0.8892 30 1 3.8568 0.6437 -0.8908 31 1 1.9293 3.0890 1.2055 32 1 0.4698 2.0739 1.2951 33 1 2.6404 0.6078 2.3517 34 1 2.0015 0.1950 4.9372 35 1 3.4610 1.2102 4.8469 36 1 2.2904 3.0029 6.0985 37 1 0.8314 1.9872 6.1885 38 1 2.4780 1.5693 10.5731 39 1 1.3754 0.2872 -2.4202 40 1 0.6495 1.5093 -4.4309 41 1 0.4314 3.9611 -4.3699 42 1 0.9491 5.1921 -2.3010 43 1 1.6679 3.9694 -0.2881 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000452749229.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:00 Heat of formation + Delta-G solvation = -62.746389 kcal Electronic energy + Delta-G solvation = -23099.702436 eV Core-core repulsion = 19723.825588 eV Total energy + Delta-G solvation = -3375.876848 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.73575 -39.10481 -37.94046 -34.76185 -33.45548 -32.74473 -31.29048 -31.17259 -29.87115 -27.62752 -26.44676 -25.54256 -23.44531 -22.70024 -21.19571 -20.24963 -19.68276 -17.77857 -17.32148 -16.59002 -16.04403 -16.00736 -15.60150 -15.23591 -14.85155 -14.67548 -14.63070 -14.09048 -13.80718 -13.72082 -13.24008 -13.03435 -12.80268 -12.72669 -12.54440 -12.30326 -12.20898 -11.93000 -11.66286 -11.39629 -11.30126 -10.94248 -10.88830 -10.15546 -10.02894 -9.92673 -9.76981 -9.26096 -9.20806 -9.15396 -9.06424 -8.85988 -8.49147 -6.01493 -4.00044 0.97704 1.08432 3.13381 3.27798 3.38884 3.41927 3.45348 3.56400 3.61867 4.28508 4.36822 4.52254 4.65661 4.69462 4.73308 4.82804 5.12637 5.17097 5.21996 5.23773 5.33944 5.34026 5.39228 5.45409 5.52672 5.56195 5.68123 5.71781 5.77590 5.90441 6.11000 6.12729 6.13417 6.18903 6.20316 6.59979 6.66135 6.72302 6.90508 7.38334 7.45537 7.77761 7.82389 8.51927 8.67260 9.01865 9.61651 11.11358 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.030355 B = 0.003030 C = 0.002898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.186469 B = 9237.303971 C = 9658.926843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.368 6.368 3 C 0.146 3.854 4 C -0.135 4.135 5 C 0.095 3.905 6 N -0.735 5.735 7 C 0.510 3.490 8 O -0.543 6.543 9 C -0.122 4.122 10 C 0.002 3.998 11 C -0.524 4.524 12 H 0.073 0.927 13 C 0.068 3.932 14 N -0.904 5.904 15 Si 0.878 3.122 16 H -0.277 1.277 17 H -0.289 1.289 18 H -0.261 1.261 19 C -0.109 4.109 20 C -0.100 4.100 21 C -0.123 4.123 22 C -0.119 4.119 23 C -0.119 4.119 24 C -0.111 4.111 25 H 0.047 0.953 26 H 0.088 0.912 27 H 0.048 0.952 28 H 0.075 0.925 29 H 0.072 0.928 30 H 0.068 0.932 31 H 0.077 0.923 32 H 0.070 0.930 33 H 0.402 0.598 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.023 0.977 37 H 0.018 0.982 38 H 0.263 0.737 39 H 0.128 0.872 40 H 0.122 0.878 41 H 0.121 0.879 42 H 0.124 0.876 43 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.028 0.313 -29.133 29.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.286 6.286 3 C 0.106 3.894 4 C -0.192 4.192 5 C -0.029 4.029 6 N -0.390 5.390 7 C 0.298 3.702 8 O -0.419 6.419 9 C -0.162 4.162 10 C -0.036 4.036 11 C -0.562 4.562 12 H 0.091 0.909 13 C -0.133 4.133 14 N -0.543 5.543 15 Si 0.705 3.295 16 H -0.203 1.203 17 H -0.215 1.215 18 H -0.185 1.185 19 C -0.110 4.110 20 C -0.118 4.118 21 C -0.141 4.141 22 C -0.137 4.137 23 C -0.137 4.137 24 C -0.129 4.129 25 H 0.065 0.935 26 H 0.106 0.894 27 H 0.067 0.933 28 H 0.094 0.906 29 H 0.090 0.910 30 H 0.087 0.913 31 H 0.095 0.905 32 H 0.089 0.911 33 H 0.237 0.763 34 H 0.104 0.896 35 H 0.104 0.896 36 H 0.042 0.958 37 H 0.037 0.963 38 H 0.073 0.927 39 H 0.146 0.854 40 H 0.140 0.860 41 H 0.139 0.861 42 H 0.142 0.858 43 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -2.411 0.883 -28.838 28.952 hybrid contribution -0.581 0.626 0.088 0.859 sum -2.993 1.509 -28.750 28.945 Atomic orbital electron populations 1.22893 0.80966 1.02913 1.00823 1.87971 1.20066 1.25920 1.94682 1.20536 0.94953 0.83189 0.90675 1.21767 0.90769 1.03214 1.03423 1.21896 0.99717 0.96905 0.84385 1.46113 1.55449 1.32114 1.05312 1.21559 0.79589 0.84380 0.84636 1.90647 1.38496 1.26008 1.86774 1.21662 1.01600 1.00750 0.92147 1.19365 0.96816 0.95985 0.91440 1.21120 1.32633 1.13128 0.89320 0.90917 1.24975 0.95527 0.96977 0.95808 1.69919 1.45691 1.40640 0.98033 0.86791 0.80929 0.83998 0.77803 1.20271 1.21467 1.18546 1.20240 1.00963 0.94177 0.95618 1.21002 0.98395 1.00383 0.92014 1.21158 1.00218 0.94474 0.98268 1.21208 0.99829 0.94507 0.98132 1.21174 0.99442 1.00081 0.93011 1.21220 0.99139 0.93640 0.98898 0.93492 0.89389 0.93346 0.90569 0.90957 0.91275 0.90538 0.91136 0.76259 0.89603 0.89567 0.95848 0.96332 0.92744 0.85419 0.85988 0.86097 0.85843 0.85408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 10.05 101.05 1.02 1.21 16 2 O -0.37 -3.86 9.48 -35.23 -0.33 -4.19 16 3 C 0.15 1.46 0.64 -91.77 -0.06 1.40 16 4 C -0.13 -1.18 8.60 37.16 0.32 -0.86 16 5 C 0.10 1.17 3.87 -4.04 -0.02 1.15 16 6 N -0.73 -10.09 5.19 -60.29 -0.31 -10.40 16 7 C 0.51 9.37 7.83 -10.99 -0.09 9.29 16 8 O -0.54 -12.10 15.98 5.56 0.09 -12.01 16 9 C -0.12 -2.39 5.64 -27.88 -0.16 -2.54 16 10 C 0.00 0.05 3.33 -27.88 -0.09 -0.05 16 11 C -0.52 -15.12 9.66 -34.44 -0.33 -15.45 16 12 H 0.07 2.19 7.99 -52.49 -0.42 1.77 16 13 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 14 N -0.90 -28.20 13.96 55.43 0.77 -27.42 16 15 Si 0.88 22.77 27.47 -169.99 -4.67 18.10 16 16 H -0.28 -7.08 7.11 56.52 0.40 -6.67 16 17 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 18 H -0.26 -6.74 6.54 56.52 0.37 -6.37 16 19 C -0.11 -1.04 4.02 -104.62 -0.42 -1.46 16 20 C -0.10 -0.87 7.77 -39.58 -0.31 -1.18 16 21 C -0.12 -0.95 10.05 -39.58 -0.40 -1.35 16 22 C -0.12 -0.90 10.05 -39.58 -0.40 -1.30 16 23 C -0.12 -0.99 10.05 -39.58 -0.40 -1.39 16 24 C -0.11 -1.04 9.14 -39.58 -0.36 -1.40 16 25 H 0.05 0.42 6.04 -51.93 -0.31 0.10 16 26 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.05 0.52 6.31 -51.93 -0.33 0.19 16 28 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.07 0.62 6.58 -51.93 -0.34 0.28 16 30 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.08 0.95 6.21 -51.93 -0.32 0.63 16 32 H 0.07 0.95 6.29 -51.93 -0.33 0.62 16 33 H 0.40 4.65 6.99 -40.82 -0.29 4.36 16 34 H 0.09 1.57 8.14 -51.93 -0.42 1.14 16 35 H 0.09 1.55 8.14 -51.93 -0.42 1.13 16 36 H 0.02 0.61 7.16 -51.93 -0.37 0.24 16 37 H 0.02 0.48 7.53 -51.92 -0.39 0.09 16 38 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 39 H 0.13 1.05 7.40 -52.48 -0.39 0.66 16 40 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16 41 H 0.12 0.67 8.06 -52.49 -0.42 0.24 16 42 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 43 H 0.13 1.18 6.05 -52.49 -0.32 0.86 16 LS Contribution 346.71 15.07 5.22 5.22 Total: -1.00 -34.33 346.71 -7.37 -41.70 By element: Atomic # 1 Polarization: 7.34 SS G_CDS: -6.35 Total: 0.98 kcal Atomic # 6 Polarization: -10.20 SS G_CDS: -1.79 Total: -11.99 kcal Atomic # 7 Polarization: -38.28 SS G_CDS: 0.46 Total: -37.82 kcal Atomic # 8 Polarization: -15.96 SS G_CDS: -0.25 Total: -16.20 kcal Atomic # 14 Polarization: 22.77 SS G_CDS: -4.67 Total: 18.10 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -34.33 -7.37 -41.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452749229.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.044 kcal (2) G-P(sol) polarization free energy of solvation -34.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds