Wall clock time and date at job start Tue Mar 31 2020 06:51:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42894 * 113.99994 * 2 1 4 4 C 1.53001 * 109.47178 * 180.02562 * 3 2 1 5 5 C 1.52997 * 109.47499 * 59.99673 * 3 2 1 6 6 N 1.46503 * 109.47127 * 65.00086 * 5 3 2 7 7 C 1.34774 * 120.00595 * 179.97438 * 6 5 3 8 8 O 1.21282 * 119.99562 * 359.97438 * 7 6 5 9 9 C 1.50698 * 120.00244 * 180.02562 * 7 6 5 10 10 C 1.53000 * 109.47130 * 180.02562 * 9 7 6 11 11 C 1.50698 * 109.47333 * 179.97438 * 10 9 7 12 12 H 1.08002 * 119.99744 * 0.02562 * 11 10 9 13 13 C 1.37870 * 120.00081 * 179.97438 * 11 10 9 14 14 N 1.31517 * 119.99915 * 180.02562 * 13 11 10 15 15 Si 1.86800 * 120.00270 * 0.02562 * 13 11 10 16 16 H 1.48497 * 109.47220 * 89.99917 * 15 13 11 17 17 H 1.48497 * 109.47240 * 209.99799 * 15 13 11 18 18 H 1.48499 * 109.46833 * 329.99943 * 15 13 11 19 19 C 1.50706 * 109.47283 * 299.99700 * 3 2 1 20 20 C 1.38237 * 119.99744 * 330.00765 * 19 3 2 21 21 C 1.38235 * 119.99712 * 180.02562 * 20 19 3 22 22 C 1.38234 * 120.00220 * 359.94731 * 21 20 19 23 23 C 1.38233 * 120.00037 * 0.28719 * 22 21 20 24 24 C 1.38234 * 120.00223 * 150.01975 * 19 3 2 25 25 H 1.08999 * 109.46857 * 59.99738 * 1 2 3 26 26 H 1.08996 * 109.47108 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46757 * 300.00116 * 1 2 3 28 28 H 1.08993 * 109.47154 * 179.97438 * 4 3 2 29 29 H 1.09001 * 109.46664 * 299.99653 * 4 3 2 30 30 H 1.08998 * 109.47218 * 59.99158 * 4 3 2 31 31 H 1.09007 * 109.47277 * 184.99609 * 5 3 2 32 32 H 1.08997 * 109.47386 * 305.00452 * 5 3 2 33 33 H 0.97006 * 119.99700 * 0.02562 * 6 5 3 34 34 H 1.09007 * 109.46732 * 299.99767 * 9 7 6 35 35 H 1.09000 * 109.47465 * 59.99985 * 9 7 6 36 36 H 1.08998 * 109.46860 * 300.00317 * 10 9 7 37 37 H 1.09009 * 109.47098 * 59.99764 * 10 9 7 38 38 H 0.97007 * 119.99461 * 180.02562 * 14 13 11 39 39 H 1.08005 * 120.00088 * 359.97438 * 20 19 3 40 40 H 1.07999 * 119.99770 * 179.97438 * 21 20 19 41 41 H 1.08002 * 119.99744 * 180.02562 * 22 21 20 42 42 H 1.07998 * 120.00395 * 179.72811 * 23 22 21 43 43 H 1.07998 * 119.99975 * 0.02562 * 24 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 1.5588 2.0648 1.2491 6 7 2.0923 1.4030 2.4424 7 6 1.8227 1.8997 3.6659 8 8 1.1386 2.8948 3.7791 9 6 2.3720 1.2193 4.8932 10 6 1.9205 1.9785 6.1424 11 6 2.4692 1.2978 7.3698 12 1 3.0794 0.4124 7.2689 13 6 2.1932 1.8059 8.6214 14 7 2.6726 1.2120 9.6925 15 14 1.1384 3.3376 8.7959 16 1 -0.2889 2.9451 8.9132 17 1 1.5478 4.0846 10.0123 18 1 1.3179 4.2009 7.6010 19 6 1.5657 2.0533 -1.2305 20 6 1.2798 1.3627 -2.3934 21 6 0.8725 2.0487 -3.5223 22 6 0.7500 3.4252 -3.4880 23 6 1.0405 4.1162 -2.3265 24 6 1.4440 3.4298 -1.1965 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 3.9788 2.1803 -0.0011 29 1 3.8574 0.6436 0.8892 30 1 3.8568 0.6437 -0.8908 31 1 1.9293 3.0890 1.2055 32 1 0.4698 2.0739 1.2951 33 1 2.6404 0.6078 2.3517 34 1 2.0015 0.1950 4.9372 35 1 3.4610 1.2102 4.8469 36 1 2.2904 3.0029 6.0985 37 1 0.8314 1.9872 6.1885 38 1 2.4780 1.5693 10.5731 39 1 1.3754 0.2872 -2.4202 40 1 0.6495 1.5093 -4.4309 41 1 0.4314 3.9611 -4.3699 42 1 0.9491 5.1921 -2.3010 43 1 1.6679 3.9694 -0.2881 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000452749229.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:59 Heat of formation + Delta-G solvation = -85.248148 kcal Electronic energy + Delta-G solvation = -23100.678185 eV Core-core repulsion = 19723.825588 eV Total energy + Delta-G solvation = -3376.852598 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.58415 -40.39625 -38.73073 -35.91545 -35.50285 -33.74937 -33.18436 -31.83483 -30.59120 -28.96589 -27.40960 -26.92382 -24.25268 -23.53329 -22.80875 -21.33490 -20.91975 -19.25307 -18.50143 -17.86317 -17.20201 -17.01418 -16.64998 -16.31939 -16.20014 -15.91413 -15.54298 -15.31657 -14.83043 -14.79315 -14.53689 -14.43820 -14.20737 -13.59637 -13.44854 -13.40363 -13.34328 -12.97688 -12.89904 -12.74428 -12.34996 -12.10888 -11.97835 -11.96013 -11.76920 -11.61396 -11.40062 -10.90951 -10.78192 -10.64427 -10.11539 -9.84688 -9.71847 -8.31432 -6.34289 0.34374 0.45996 1.33095 1.34885 1.50078 1.66561 2.15004 2.34982 2.70144 2.83311 3.04180 3.50852 3.55157 3.86237 3.98531 4.06442 4.12738 4.26448 4.36986 4.40468 4.45313 4.48730 4.51820 4.57701 4.65260 4.68837 4.74090 4.80567 4.89714 4.99710 5.04022 5.12469 5.19977 5.31025 5.41938 5.44640 5.51273 5.57076 5.59984 5.61240 6.05893 6.12232 6.23673 6.54372 6.72108 7.27339 7.31049 8.84254 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.030355 B = 0.003030 C = 0.002898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.186469 B = 9237.303971 C = 9658.926843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.374 6.374 3 C 0.154 3.846 4 C -0.135 4.135 5 C 0.096 3.904 6 N -0.712 5.712 7 C 0.515 3.485 8 O -0.586 6.586 9 C -0.117 4.117 10 C 0.006 3.994 11 C -0.529 4.529 12 H 0.050 0.950 13 C 0.013 3.987 14 N -0.944 5.944 15 Si 0.939 3.061 16 H -0.269 1.269 17 H -0.278 1.278 18 H -0.261 1.261 19 C -0.119 4.119 20 C -0.106 4.106 21 C -0.125 4.125 22 C -0.121 4.121 23 C -0.127 4.127 24 C -0.127 4.127 25 H 0.053 0.947 26 H 0.103 0.897 27 H 0.032 0.968 28 H 0.079 0.921 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.059 0.941 33 H 0.415 0.585 34 H 0.101 0.899 35 H 0.104 0.896 36 H 0.011 0.989 37 H 0.008 0.992 38 H 0.267 0.733 39 H 0.132 0.868 40 H 0.144 0.856 41 H 0.144 0.856 42 H 0.137 0.863 43 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.358 0.502 -31.460 31.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.293 6.293 3 C 0.114 3.886 4 C -0.193 4.193 5 C -0.028 4.028 6 N -0.366 5.366 7 C 0.304 3.696 8 O -0.466 6.466 9 C -0.156 4.156 10 C -0.032 4.032 11 C -0.567 4.567 12 H 0.069 0.931 13 C -0.185 4.185 14 N -0.584 5.584 15 Si 0.763 3.237 16 H -0.194 1.194 17 H -0.203 1.203 18 H -0.186 1.186 19 C -0.120 4.120 20 C -0.124 4.124 21 C -0.142 4.142 22 C -0.139 4.139 23 C -0.145 4.145 24 C -0.145 4.145 25 H 0.071 0.929 26 H 0.121 0.879 27 H 0.051 0.949 28 H 0.098 0.902 29 H 0.093 0.907 30 H 0.096 0.904 31 H 0.094 0.906 32 H 0.077 0.923 33 H 0.253 0.747 34 H 0.119 0.881 35 H 0.122 0.878 36 H 0.029 0.971 37 H 0.026 0.974 38 H 0.076 0.924 39 H 0.150 0.850 40 H 0.162 0.838 41 H 0.162 0.838 42 H 0.155 0.845 43 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -2.720 1.035 -31.205 31.341 hybrid contribution -0.453 0.505 0.729 0.996 sum -3.173 1.541 -30.476 30.680 Atomic orbital electron populations 1.22946 0.80536 1.03788 1.00330 1.87965 1.20556 1.26098 1.94634 1.20464 0.95591 0.82805 0.89700 1.21805 0.89815 1.03667 1.03965 1.22007 0.99025 0.97255 0.84562 1.45854 1.54313 1.31959 1.04494 1.21204 0.79158 0.83742 0.85545 1.90635 1.40633 1.27900 1.87445 1.21495 1.02769 1.00738 0.90620 1.19217 0.95843 0.95622 0.92547 1.21430 1.31903 1.12466 0.90865 0.93144 1.25809 0.96929 1.00057 0.95678 1.70029 1.47286 1.42418 0.98682 0.85820 0.79499 0.80389 0.77951 1.19423 1.20320 1.18560 1.20196 1.01895 0.94224 0.95669 1.21108 0.98579 1.00659 0.92099 1.21462 0.99316 0.94750 0.98721 1.21527 0.99012 0.94721 0.98605 1.21419 0.99148 1.00972 0.92976 1.21291 1.00091 0.93832 0.99307 0.92889 0.87860 0.94924 0.90185 0.90748 0.90393 0.90629 0.92278 0.74688 0.88088 0.87792 0.97096 0.97404 0.92378 0.85026 0.83806 0.83848 0.84507 0.85978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.35 10.05 113.37 1.14 1.49 16 2 O -0.37 -7.26 9.48 -148.98 -1.41 -8.67 16 3 C 0.15 2.88 0.64 -11.54 -0.01 2.87 16 4 C -0.14 -2.15 8.60 71.98 0.62 -1.53 16 5 C 0.10 2.28 3.87 86.38 0.33 2.61 16 6 N -0.71 -18.71 5.19 -463.06 -2.40 -21.11 16 7 C 0.52 18.55 7.83 87.66 0.69 19.23 16 8 O -0.59 -26.07 15.98 -3.03 -0.05 -26.12 16 9 C -0.12 -4.46 5.64 29.85 0.17 -4.29 16 10 C 0.01 0.29 3.33 29.85 0.10 0.39 16 11 C -0.53 -30.76 9.66 25.60 0.25 -30.51 16 12 H 0.05 3.08 7.99 -2.91 -0.02 3.06 16 13 C 0.01 0.77 5.47 84.65 0.46 1.23 16 14 N -0.94 -59.45 13.96 21.45 0.30 -59.15 16 15 Si 0.94 47.14 27.47 68.60 1.88 49.02 16 16 H -0.27 -13.08 7.11 99.48 0.71 -12.37 16 17 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 18 H -0.26 -13.04 6.54 99.48 0.65 -12.39 16 19 C -0.12 -2.12 4.02 -19.86 -0.08 -2.20 16 20 C -0.11 -1.66 7.77 22.27 0.17 -1.48 16 21 C -0.12 -1.62 10.05 22.27 0.22 -1.39 16 22 C -0.12 -1.55 10.05 22.27 0.22 -1.33 16 23 C -0.13 -1.92 10.05 22.27 0.22 -1.70 16 24 C -0.13 -2.28 9.14 22.27 0.20 -2.08 16 25 H 0.05 0.87 6.04 -2.39 -0.01 0.86 16 26 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 27 H 0.03 0.68 6.31 -2.39 -0.02 0.66 16 28 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 29 H 0.07 1.13 6.58 -2.39 -0.02 1.11 16 30 H 0.08 1.11 8.14 -2.39 -0.02 1.10 16 31 H 0.08 1.86 6.21 -2.38 -0.01 1.84 16 32 H 0.06 1.58 6.29 -2.39 -0.02 1.57 16 33 H 0.41 8.82 6.99 -92.70 -0.65 8.18 16 34 H 0.10 3.55 8.14 -2.38 -0.02 3.53 16 35 H 0.10 3.60 8.14 -2.39 -0.02 3.58 16 36 H 0.01 0.56 7.16 -2.39 -0.02 0.55 16 37 H 0.01 0.40 7.53 -2.38 -0.02 0.38 16 38 H 0.27 15.73 8.31 -92.70 -0.77 14.96 16 39 H 0.13 1.90 7.40 -2.91 -0.02 1.88 16 40 H 0.14 1.18 8.06 -2.91 -0.02 1.16 16 41 H 0.14 1.14 8.06 -2.91 -0.02 1.12 16 42 H 0.14 1.59 8.06 -2.91 -0.02 1.57 16 43 H 0.12 2.24 6.05 -2.91 -0.02 2.22 16 Total: -1.00 -73.51 346.71 3.34 -70.17 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: 0.31 Total: 14.54 kcal Atomic # 6 Polarization: -23.39 SS G_CDS: 4.72 Total: -18.67 kcal Atomic # 7 Polarization: -78.16 SS G_CDS: -2.10 Total: -80.26 kcal Atomic # 8 Polarization: -33.33 SS G_CDS: -1.46 Total: -34.80 kcal Atomic # 14 Polarization: 47.14 SS G_CDS: 1.88 Total: 49.02 kcal Total: -73.51 3.34 -70.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452749229.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.079 kcal (2) G-P(sol) polarization free energy of solvation -73.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds