Wall clock time and date at job start Tue Mar 31 2020 06:47:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53002 * 109.47478 * 2 1 4 4 N 1.46501 * 109.47318 * 180.02562 * 3 2 1 5 5 C 1.37103 * 119.99670 * 269.99755 * 4 3 2 6 6 H 1.07996 * 119.99512 * 138.63057 * 5 4 3 7 7 C 1.38947 * 119.99694 * 318.63437 * 5 4 3 8 8 N 1.31403 * 120.00459 * 352.30631 * 7 5 4 9 9 Si 1.86801 * 119.99636 * 172.30978 * 7 5 4 10 10 H 1.48502 * 109.47230 * 60.00085 * 9 7 5 11 11 H 1.48499 * 109.47042 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47446 * 299.99764 * 9 7 5 13 13 C 1.34775 * 120.00078 * 89.99471 * 4 3 2 14 14 O 1.21285 * 120.00094 * 355.64232 * 13 4 3 15 15 C 1.50701 * 119.99748 * 175.90855 * 13 4 3 16 16 O 1.42901 * 109.47253 * 184.81692 * 15 13 4 17 17 C 1.35901 * 116.99845 * 184.07590 * 16 15 13 18 18 C 1.38750 * 120.05640 * 4.71195 * 17 16 15 19 19 C 1.38131 * 119.93748 * 179.70228 * 18 17 16 20 20 C 1.38281 * 120.05625 * 0.59842 * 19 18 17 21 21 C 1.38242 * 120.11381 * 359.67790 * 20 19 18 22 22 C 1.50700 * 119.97210 * 180.02562 * 21 20 19 23 23 C 1.52999 * 109.46984 * 270.02002 * 22 21 20 24 24 C 1.38168 * 120.05462 * 0.02562 * 21 20 19 25 25 H 1.08998 * 109.47599 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.46936 * 300.00184 * 1 2 3 27 27 H 1.09000 * 109.47464 * 60.00232 * 1 2 3 28 28 H 1.09000 * 109.47300 * 239.99585 * 2 1 3 29 29 H 1.09004 * 109.47521 * 120.00258 * 2 1 3 30 30 H 1.08993 * 109.46851 * 59.99766 * 3 2 1 31 31 H 1.09002 * 109.46846 * 299.99838 * 3 2 1 32 32 H 0.97008 * 120.00384 * 185.00886 * 8 7 5 33 33 H 1.08998 * 109.47214 * 304.82127 * 15 13 4 34 34 H 1.09002 * 109.46932 * 64.81911 * 15 13 4 35 35 H 1.07992 * 120.02860 * 359.97418 * 18 17 16 36 36 H 1.08001 * 119.96375 * 180.29698 * 19 18 17 37 37 H 1.08001 * 119.94288 * 179.70170 * 20 19 18 38 38 H 1.09004 * 109.47413 * 30.01834 * 22 21 20 39 39 H 1.08996 * 109.47304 * 150.02360 * 22 21 20 40 40 H 1.09000 * 109.47686 * 180.02562 * 23 22 21 41 41 H 1.09004 * 109.46908 * 300.00141 * 23 22 21 42 42 H 1.08999 * 109.47259 * 59.99800 * 23 22 21 43 43 H 1.08005 * 120.02732 * 180.02562 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.1910 1.4423 1.1865 6 1 5.0688 0.8241 1.3027 7 6 3.7566 2.2375 2.2399 8 7 2.7833 3.1005 2.0538 9 14 4.5563 2.0796 3.9207 10 1 6.0045 2.3892 3.8109 11 1 3.9172 3.0316 4.8643 12 1 4.3833 0.6929 4.4229 13 6 4.1784 1.4425 -1.1681 14 8 3.5742 1.3628 -2.2167 15 6 5.6826 1.5356 -1.1703 16 8 6.1520 1.6300 -2.5167 17 6 7.4984 1.6359 -2.7016 18 6 8.3491 1.4544 -1.6207 19 6 9.7170 1.4546 -1.8124 20 6 10.2389 1.6479 -3.0783 21 6 9.3935 1.8348 -4.1559 22 6 9.9657 2.0446 -5.5342 23 6 10.1849 3.5398 -5.7732 24 6 8.0243 1.8292 -3.9705 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 1.6767 1.9563 0.8899 31 1 1.6767 1.9563 -0.8900 32 1 2.5289 3.7061 2.7677 33 1 5.9927 2.4204 -0.6144 34 1 6.1023 0.6459 -0.7007 35 1 7.9420 1.3086 -0.6311 36 1 10.3795 1.3086 -0.9720 37 1 11.3089 1.6526 -3.2253 38 1 10.9178 1.5202 -5.6161 39 1 9.2714 1.6556 -6.2790 40 1 10.5983 3.6917 -6.7702 41 1 9.2327 4.0642 -5.6913 42 1 10.8791 3.9289 -5.0284 43 1 7.3642 1.9748 -4.8128 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000516228510.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:06 Heat of formation + Delta-G solvation = -63.524614 kcal Electronic energy + Delta-G solvation = -22987.666763 eV Core-core repulsion = 19611.756168 eV Total energy + Delta-G solvation = -3375.910595 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.97105 -38.63270 -37.24356 -35.07234 -33.75588 -32.85241 -31.40247 -30.41495 -29.01682 -27.78997 -25.69019 -24.40210 -23.71357 -22.29631 -21.07407 -20.36145 -19.23491 -17.61137 -17.18512 -15.95041 -15.77739 -15.54566 -15.45827 -14.74029 -14.44400 -14.32790 -13.92365 -13.73760 -13.56897 -13.40786 -13.00823 -12.94295 -12.45436 -12.32165 -11.82884 -11.78016 -11.51772 -11.41324 -11.30711 -11.28855 -11.04839 -10.97837 -10.74633 -10.61199 -10.51495 -10.37636 -10.25004 -9.75569 -9.18497 -8.67298 -8.50836 -7.91839 -7.54699 -6.42016 -4.28168 1.46317 1.64447 3.04485 3.12966 3.13597 3.40097 3.78634 3.91421 4.02560 4.71665 4.83707 4.87648 4.99361 5.06831 5.27672 5.28674 5.39500 5.48132 5.61177 5.66913 5.78103 5.78924 5.82278 5.82797 5.92851 5.98096 6.02620 6.10845 6.20395 6.21347 6.51632 6.53638 6.56367 6.61424 6.70688 6.71202 6.84844 6.96364 7.12348 7.23226 7.53792 7.78741 7.89301 8.28856 8.95734 9.38028 9.81625 10.55466 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.017353 B = 0.003886 C = 0.003351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1613.194939 B = 7203.377834 C = 8354.246139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.133 4.133 3 C 0.109 3.891 4 N -0.435 5.435 5 C -0.346 4.346 6 H 0.086 0.914 7 C 0.048 3.952 8 N -0.864 5.864 9 Si 0.920 3.080 10 H -0.271 1.271 11 H -0.282 1.282 12 H -0.271 1.271 13 C 0.475 3.525 14 O -0.585 6.585 15 C 0.061 3.939 16 O -0.293 6.293 17 C 0.145 3.855 18 C -0.216 4.216 19 C -0.077 4.077 20 C -0.167 4.167 21 C -0.048 4.048 22 C -0.083 4.083 23 C -0.147 4.147 24 C -0.155 4.155 25 H 0.044 0.956 26 H 0.052 0.948 27 H 0.049 0.951 28 H 0.049 0.951 29 H 0.058 0.942 30 H 0.120 0.880 31 H 0.051 0.949 32 H 0.273 0.727 33 H 0.089 0.911 34 H 0.078 0.922 35 H 0.131 0.869 36 H 0.121 0.879 37 H 0.117 0.883 38 H 0.071 0.929 39 H 0.072 0.928 40 H 0.056 0.944 41 H 0.058 0.942 42 H 0.055 0.945 43 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.838 -1.726 -5.396 12.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.172 4.172 3 C -0.013 4.013 4 N -0.154 5.154 5 C -0.474 4.474 6 H 0.104 0.896 7 C -0.158 4.158 8 N -0.501 5.501 9 Si 0.746 3.254 10 H -0.196 1.196 11 H -0.207 1.207 12 H -0.196 1.196 13 C 0.262 3.738 14 O -0.469 6.469 15 C -0.017 4.017 16 O -0.205 6.205 17 C 0.098 3.902 18 C -0.235 4.235 19 C -0.095 4.095 20 C -0.186 4.186 21 C -0.048 4.048 22 C -0.120 4.120 23 C -0.204 4.204 24 C -0.174 4.174 25 H 0.063 0.937 26 H 0.071 0.929 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.076 0.924 30 H 0.137 0.863 31 H 0.069 0.931 32 H 0.084 0.916 33 H 0.107 0.893 34 H 0.095 0.905 35 H 0.149 0.851 36 H 0.139 0.861 37 H 0.136 0.864 38 H 0.089 0.911 39 H 0.091 0.909 40 H 0.075 0.925 41 H 0.077 0.923 42 H 0.074 0.926 43 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 10.185 -1.636 -5.900 11.884 hybrid contribution 0.495 -0.075 1.370 1.459 sum 10.680 -1.711 -4.530 11.726 Atomic orbital electron populations 1.21647 0.96586 1.00382 1.01404 1.21824 0.94712 0.99537 1.01145 1.21683 0.80720 0.94736 1.04200 1.43310 1.04973 1.63408 1.03747 1.19427 1.12462 1.25938 0.89569 0.89605 1.25492 0.95917 0.94238 1.00150 1.69637 1.27293 1.18857 1.34289 0.86110 0.79399 0.78488 0.81403 1.19623 1.20666 1.19634 1.19882 0.87779 0.81494 0.84647 1.90567 1.69797 1.54827 1.31712 1.22439 0.95443 1.02936 0.80892 1.86151 1.17792 1.87171 1.29404 1.19151 0.83078 0.93959 0.94034 1.21388 0.94339 1.08763 0.99024 1.20887 0.94366 0.97313 0.96970 1.20816 0.99155 1.06074 0.92514 1.19609 0.92334 0.97415 0.95479 1.20530 1.00935 0.97344 0.93239 1.21748 1.02192 0.95257 1.01218 1.20275 0.94503 1.07181 0.95414 0.93702 0.92923 0.93174 0.93171 0.92352 0.86261 0.93051 0.91604 0.89267 0.90459 0.85093 0.86062 0.86450 0.91052 0.90927 0.92530 0.92316 0.92562 0.85394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.45 9.91 37.15 0.37 -2.08 16 2 C -0.13 -2.78 6.26 -26.73 -0.17 -2.95 16 3 C 0.11 2.63 4.96 -4.04 -0.02 2.61 16 4 N -0.43 -10.90 2.52 -114.81 -0.29 -11.19 16 5 C -0.35 -8.44 8.49 -14.93 -0.13 -8.57 16 6 H 0.09 1.96 7.31 -52.49 -0.38 1.58 16 7 C 0.05 1.16 5.24 -17.47 -0.09 1.07 16 8 N -0.86 -21.98 10.93 55.50 0.61 -21.37 16 9 Si 0.92 18.59 29.56 -169.99 -5.03 13.57 16 10 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 11 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 12 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 13 C 0.47 11.92 7.70 -10.99 -0.08 11.83 16 14 O -0.58 -16.26 16.13 -14.30 -0.23 -16.49 16 15 C 0.06 1.28 4.01 36.01 0.14 1.42 16 16 O -0.29 -6.19 9.67 -39.28 -0.38 -6.57 16 17 C 0.14 2.55 6.68 -39.22 -0.26 2.29 16 18 C -0.22 -3.37 9.07 -39.43 -0.36 -3.73 16 19 C -0.08 -1.01 10.04 -39.60 -0.40 -1.41 16 20 C -0.17 -2.06 9.70 -39.56 -0.38 -2.44 16 21 C -0.05 -0.62 5.13 -104.65 -0.54 -1.16 16 22 C -0.08 -0.82 6.06 -27.88 -0.17 -0.99 16 23 C -0.15 -1.33 9.89 37.16 0.37 -0.96 16 24 C -0.16 -2.41 9.64 -39.43 -0.38 -2.79 16 25 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 28 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 29 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 30 H 0.12 3.01 5.26 -51.93 -0.27 2.74 16 31 H 0.05 1.29 7.48 -51.93 -0.39 0.90 16 32 H 0.27 6.57 8.32 -40.82 -0.34 6.23 16 33 H 0.09 1.82 7.95 -51.93 -0.41 1.41 16 34 H 0.08 1.47 6.90 -51.93 -0.36 1.11 16 35 H 0.13 1.97 6.28 -52.49 -0.33 1.64 16 36 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 37 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 38 H 0.07 0.60 8.09 -51.93 -0.42 0.18 16 39 H 0.07 0.68 8.08 -51.93 -0.42 0.26 16 40 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.13 1.92 8.06 -52.48 -0.42 1.49 16 LS Contribution 357.89 15.07 5.39 5.39 Total: -1.00 -29.09 357.89 -8.79 -37.89 By element: Atomic # 1 Polarization: 13.39 SS G_CDS: -6.77 Total: 6.62 kcal Atomic # 6 Polarization: -5.76 SS G_CDS: -2.10 Total: -7.86 kcal Atomic # 7 Polarization: -32.88 SS G_CDS: 0.32 Total: -32.56 kcal Atomic # 8 Polarization: -22.44 SS G_CDS: -0.61 Total: -23.06 kcal Atomic # 14 Polarization: 18.59 SS G_CDS: -5.03 Total: 13.57 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -29.09 -8.79 -37.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000516228510.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.638 kcal (2) G-P(sol) polarization free energy of solvation -29.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds