Wall clock time and date at job start Tue Mar 31 2020 06:47:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53002 * 109.47478 * 2 1 4 4 N 1.46501 * 109.47318 * 180.02562 * 3 2 1 5 5 C 1.37103 * 119.99670 * 269.99755 * 4 3 2 6 6 H 1.07996 * 119.99512 * 138.63057 * 5 4 3 7 7 C 1.38947 * 119.99694 * 318.63437 * 5 4 3 8 8 N 1.31403 * 120.00459 * 352.30631 * 7 5 4 9 9 Si 1.86801 * 119.99636 * 172.30978 * 7 5 4 10 10 H 1.48502 * 109.47230 * 60.00085 * 9 7 5 11 11 H 1.48499 * 109.47042 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47446 * 299.99764 * 9 7 5 13 13 C 1.34775 * 120.00078 * 89.99471 * 4 3 2 14 14 O 1.21285 * 120.00094 * 355.64232 * 13 4 3 15 15 C 1.50701 * 119.99748 * 175.90855 * 13 4 3 16 16 O 1.42901 * 109.47253 * 184.81692 * 15 13 4 17 17 C 1.35901 * 116.99845 * 184.07590 * 16 15 13 18 18 C 1.38750 * 120.05640 * 4.71195 * 17 16 15 19 19 C 1.38131 * 119.93748 * 179.70228 * 18 17 16 20 20 C 1.38281 * 120.05625 * 0.59842 * 19 18 17 21 21 C 1.38242 * 120.11381 * 359.67790 * 20 19 18 22 22 C 1.50700 * 119.97210 * 180.02562 * 21 20 19 23 23 C 1.52999 * 109.46984 * 270.02002 * 22 21 20 24 24 C 1.38168 * 120.05462 * 0.02562 * 21 20 19 25 25 H 1.08998 * 109.47599 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.46936 * 300.00184 * 1 2 3 27 27 H 1.09000 * 109.47464 * 60.00232 * 1 2 3 28 28 H 1.09000 * 109.47300 * 239.99585 * 2 1 3 29 29 H 1.09004 * 109.47521 * 120.00258 * 2 1 3 30 30 H 1.08993 * 109.46851 * 59.99766 * 3 2 1 31 31 H 1.09002 * 109.46846 * 299.99838 * 3 2 1 32 32 H 0.97008 * 120.00384 * 185.00886 * 8 7 5 33 33 H 1.08998 * 109.47214 * 304.82127 * 15 13 4 34 34 H 1.09002 * 109.46932 * 64.81911 * 15 13 4 35 35 H 1.07992 * 120.02860 * 359.97418 * 18 17 16 36 36 H 1.08001 * 119.96375 * 180.29698 * 19 18 17 37 37 H 1.08001 * 119.94288 * 179.70170 * 20 19 18 38 38 H 1.09004 * 109.47413 * 30.01834 * 22 21 20 39 39 H 1.08996 * 109.47304 * 150.02360 * 22 21 20 40 40 H 1.09000 * 109.47686 * 180.02562 * 23 22 21 41 41 H 1.09004 * 109.46908 * 300.00141 * 23 22 21 42 42 H 1.08999 * 109.47259 * 59.99800 * 23 22 21 43 43 H 1.08005 * 120.02732 * 180.02562 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.1910 1.4423 1.1865 6 1 5.0688 0.8241 1.3027 7 6 3.7566 2.2375 2.2399 8 7 2.7833 3.1005 2.0538 9 14 4.5563 2.0796 3.9207 10 1 6.0045 2.3892 3.8109 11 1 3.9172 3.0316 4.8643 12 1 4.3833 0.6929 4.4229 13 6 4.1784 1.4425 -1.1681 14 8 3.5742 1.3628 -2.2167 15 6 5.6826 1.5356 -1.1703 16 8 6.1520 1.6300 -2.5167 17 6 7.4984 1.6359 -2.7016 18 6 8.3491 1.4544 -1.6207 19 6 9.7170 1.4546 -1.8124 20 6 10.2389 1.6479 -3.0783 21 6 9.3935 1.8348 -4.1559 22 6 9.9657 2.0446 -5.5342 23 6 10.1849 3.5398 -5.7732 24 6 8.0243 1.8292 -3.9705 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 1.6767 1.9563 0.8899 31 1 1.6767 1.9563 -0.8900 32 1 2.5289 3.7061 2.7677 33 1 5.9927 2.4204 -0.6144 34 1 6.1023 0.6459 -0.7007 35 1 7.9420 1.3086 -0.6311 36 1 10.3795 1.3086 -0.9720 37 1 11.3089 1.6526 -3.2253 38 1 10.9178 1.5202 -5.6161 39 1 9.2714 1.6556 -6.2790 40 1 10.5983 3.6917 -6.7702 41 1 9.2327 4.0642 -5.6913 42 1 10.8791 3.9289 -5.0284 43 1 7.3642 1.9748 -4.8128 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000516228510.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:05 Heat of formation + Delta-G solvation = -77.005932 kcal Electronic energy + Delta-G solvation = -22988.251357 eV Core-core repulsion = 19611.756168 eV Total energy + Delta-G solvation = -3376.495188 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.34983 -40.35682 -38.62018 -37.00250 -34.70137 -34.57283 -33.29768 -31.63757 -30.02898 -29.37096 -27.50391 -26.07955 -24.73209 -23.42069 -22.60762 -21.70884 -21.08223 -19.09715 -18.83188 -17.60588 -17.31866 -16.95946 -16.80404 -16.41617 -16.00593 -15.52012 -15.43237 -15.35732 -14.89389 -14.47687 -14.30644 -14.20095 -13.90888 -13.73946 -13.30782 -13.20524 -12.99396 -12.88579 -12.73320 -12.60183 -12.45188 -12.32892 -12.09919 -12.02220 -11.87451 -11.81747 -11.58047 -11.53733 -11.05678 -10.47125 -9.75804 -9.50611 -9.14353 -8.29061 -6.22580 0.36977 0.50016 1.42825 1.49089 1.58093 1.80083 1.96689 2.32846 2.80506 3.01665 3.14038 3.83834 3.85603 4.03775 4.08652 4.19068 4.20009 4.28243 4.33802 4.34704 4.41128 4.52230 4.54393 4.56373 4.66495 4.77322 4.80172 4.97121 5.08030 5.10292 5.10612 5.16168 5.20362 5.34859 5.37214 5.39533 5.41997 5.51551 5.61132 5.67378 5.89105 5.97683 6.35100 6.46829 7.04501 7.43950 7.88815 8.69682 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.017353 B = 0.003886 C = 0.003351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1613.194939 B = 7203.377834 C = 8354.246139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.124 4.124 3 C 0.107 3.893 4 N -0.441 5.441 5 C -0.364 4.364 6 H 0.101 0.899 7 C 0.008 3.992 8 N -0.895 5.895 9 Si 0.991 3.009 10 H -0.260 1.260 11 H -0.283 1.283 12 H -0.264 1.264 13 C 0.455 3.545 14 O -0.625 6.625 15 C 0.078 3.922 16 O -0.325 6.325 17 C 0.106 3.894 18 C -0.228 4.228 19 C -0.075 4.075 20 C -0.158 4.158 21 C -0.046 4.046 22 C -0.082 4.082 23 C -0.145 4.145 24 C -0.172 4.172 25 H 0.072 0.928 26 H 0.058 0.942 27 H 0.050 0.950 28 H 0.035 0.965 29 H 0.057 0.943 30 H 0.110 0.890 31 H 0.028 0.972 32 H 0.276 0.724 33 H 0.091 0.909 34 H 0.095 0.905 35 H 0.131 0.869 36 H 0.153 0.847 37 H 0.154 0.846 38 H 0.095 0.905 39 H 0.073 0.927 40 H 0.075 0.925 41 H 0.041 0.959 42 H 0.059 0.941 43 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.611 -2.373 -4.442 14.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.162 4.162 3 C -0.015 4.015 4 N -0.159 5.159 5 C -0.491 4.491 6 H 0.118 0.882 7 C -0.195 4.195 8 N -0.532 5.532 9 Si 0.813 3.187 10 H -0.184 1.184 11 H -0.208 1.208 12 H -0.189 1.189 13 C 0.244 3.756 14 O -0.512 6.512 15 C 0.001 3.999 16 O -0.238 6.238 17 C 0.061 3.939 18 C -0.246 4.246 19 C -0.093 4.093 20 C -0.176 4.176 21 C -0.046 4.046 22 C -0.119 4.119 23 C -0.203 4.203 24 C -0.191 4.191 25 H 0.091 0.909 26 H 0.077 0.923 27 H 0.069 0.931 28 H 0.054 0.946 29 H 0.076 0.924 30 H 0.128 0.872 31 H 0.047 0.953 32 H 0.086 0.914 33 H 0.109 0.891 34 H 0.113 0.887 35 H 0.149 0.851 36 H 0.171 0.829 37 H 0.171 0.829 38 H 0.114 0.886 39 H 0.092 0.908 40 H 0.094 0.906 41 H 0.060 0.940 42 H 0.078 0.922 43 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 12.973 -2.289 -4.944 14.071 hybrid contribution -0.296 0.165 1.002 1.058 sum 12.677 -2.125 -3.942 13.445 Atomic orbital electron populations 1.21602 0.93547 1.02348 1.01776 1.21713 0.97356 0.96910 1.00255 1.21688 0.80845 0.96585 1.02428 1.43594 1.05452 1.62632 1.04272 1.19848 1.13095 1.26721 0.89409 0.88165 1.26366 0.96136 0.93407 1.03566 1.69764 1.28446 1.19530 1.35508 0.85028 0.78800 0.78507 0.76344 1.18428 1.20815 1.18913 1.20614 0.89693 0.81172 0.84123 1.90516 1.71033 1.56747 1.32918 1.22144 0.92514 1.03671 0.81609 1.86085 1.20319 1.88403 1.29013 1.19508 0.81852 0.96844 0.95698 1.21514 0.95459 1.09276 0.98375 1.21283 0.93515 0.95960 0.98556 1.21284 1.00877 1.03691 0.91723 1.20004 0.91159 0.95897 0.97528 1.20620 1.01893 0.98166 0.91257 1.21740 1.01543 0.94401 1.02571 1.20466 0.95956 1.08072 0.94589 0.90907 0.92318 0.93059 0.94640 0.92436 0.87230 0.95329 0.91413 0.89141 0.88675 0.85085 0.82940 0.82856 0.88607 0.90846 0.90563 0.93978 0.92161 0.86163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.56 9.91 71.98 0.71 -3.84 16 2 C -0.12 -5.26 6.26 30.59 0.19 -5.07 16 3 C 0.11 5.38 4.96 86.38 0.43 5.81 16 4 N -0.44 -22.85 2.52 -635.55 -1.60 -24.45 16 5 C -0.36 -17.85 8.49 84.04 0.71 -17.13 16 6 H 0.10 4.53 7.31 -2.91 -0.02 4.50 16 7 C 0.01 0.41 5.24 84.93 0.45 0.85 16 8 N -0.90 -46.09 10.93 21.66 0.24 -45.85 16 9 Si 0.99 37.25 29.56 68.60 2.03 39.28 16 10 H -0.26 -9.27 7.11 99.48 0.71 -8.57 16 11 H -0.28 -10.64 7.11 99.48 0.71 -9.93 16 12 H -0.26 -9.63 7.11 99.48 0.71 -8.92 16 13 C 0.46 23.93 7.70 87.66 0.67 24.61 16 14 O -0.62 -36.76 16.13 15.94 0.26 -36.50 16 15 C 0.08 3.42 4.01 71.24 0.29 3.70 16 16 O -0.32 -14.43 9.67 -73.44 -0.71 -15.14 16 17 C 0.11 3.85 6.68 22.50 0.15 4.00 16 18 C -0.23 -6.96 9.07 22.37 0.20 -6.75 16 19 C -0.08 -1.77 10.04 22.25 0.22 -1.55 16 20 C -0.16 -3.36 9.70 22.28 0.22 -3.14 16 21 C -0.05 -1.10 5.13 -19.88 -0.10 -1.20 16 22 C -0.08 -1.42 6.06 29.85 0.18 -1.23 16 23 C -0.15 -2.31 9.89 71.98 0.71 -1.60 16 24 C -0.17 -5.44 9.64 22.37 0.22 -5.23 16 25 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 26 H 0.06 1.90 8.14 -2.38 -0.02 1.88 16 27 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 28 H 0.03 1.58 8.14 -2.39 -0.02 1.56 16 29 H 0.06 2.42 8.14 -2.38 -0.02 2.40 16 30 H 0.11 5.72 5.26 -2.39 -0.01 5.71 16 31 H 0.03 1.51 7.48 -2.39 -0.02 1.49 16 32 H 0.28 13.35 8.32 -92.70 -0.77 12.58 16 33 H 0.09 3.83 7.95 -2.39 -0.02 3.81 16 34 H 0.10 3.70 6.90 -2.39 -0.02 3.68 16 35 H 0.13 3.88 6.28 -2.91 -0.02 3.86 16 36 H 0.15 2.61 8.06 -2.91 -0.02 2.58 16 37 H 0.15 2.20 8.06 -2.91 -0.02 2.17 16 38 H 0.10 1.22 8.09 -2.38 -0.02 1.20 16 39 H 0.07 1.26 8.08 -2.39 -0.02 1.24 16 40 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 41 H 0.04 0.80 8.14 -2.38 -0.02 0.78 16 42 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 43 H 0.12 3.83 8.06 -2.91 -0.02 3.80 16 Total: -1.00 -65.55 357.89 6.44 -59.10 By element: Atomic # 1 Polarization: 30.37 SS G_CDS: 0.98 Total: 31.35 kcal Atomic # 6 Polarization: -13.04 SS G_CDS: 5.25 Total: -7.79 kcal Atomic # 7 Polarization: -68.95 SS G_CDS: -1.36 Total: -70.31 kcal Atomic # 8 Polarization: -51.19 SS G_CDS: -0.45 Total: -51.64 kcal Atomic # 14 Polarization: 37.25 SS G_CDS: 2.03 Total: 39.28 kcal Total: -65.55 6.44 -59.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000516228510.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.902 kcal (2) G-P(sol) polarization free energy of solvation -65.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds