Wall clock time and date at job start Tue Mar 31 2020 06:37:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42902 * 114.00072 * 2 1 4 4 C 1.50692 * 109.47254 * 179.97438 * 3 2 1 5 5 C 1.38352 * 119.85583 * 269.72691 * 4 3 2 6 6 C 1.37966 * 120.14506 * 179.72216 * 5 4 3 7 7 C 1.39572 * 119.85128 * 0.55002 * 6 5 4 8 8 C 1.47846 * 120.14412 * 179.70539 * 7 6 5 9 9 O 1.21546 * 120.00388 * 137.51811 * 8 7 6 10 10 N 1.34774 * 119.99770 * 317.51017 * 8 7 6 11 11 C 1.46501 * 120.00418 * 212.31956 * 10 8 7 12 12 C 1.50705 * 109.47376 * 89.99920 * 11 10 8 13 13 H 1.07995 * 119.99602 * 0.02562 * 12 11 10 14 14 C 1.37869 * 120.00220 * 180.02562 * 12 11 10 15 15 N 1.31516 * 120.00238 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 120.00148 * 180.02562 * 14 12 11 17 17 H 1.48504 * 109.47091 * 89.99849 * 16 14 12 18 18 H 1.48494 * 109.47460 * 209.99740 * 16 14 12 19 19 H 1.48499 * 109.46942 * 329.99875 * 16 14 12 20 20 C 1.46507 * 120.00119 * 32.31936 * 10 8 7 21 21 C 1.52996 * 109.47233 * 301.60995 * 20 10 8 22 22 C 1.52998 * 109.46605 * 61.60860 * 20 10 8 23 23 C 1.39578 * 119.71443 * 359.72092 * 7 6 5 24 24 C 1.37957 * 119.84971 * 0.02562 * 23 7 6 25 25 H 1.08999 * 109.46889 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.46815 * 299.99952 * 1 2 3 27 27 H 1.08990 * 109.47368 * 60.00093 * 1 2 3 28 28 H 1.09003 * 109.46734 * 300.00346 * 3 2 1 29 29 H 1.09002 * 109.46964 * 59.99445 * 3 2 1 30 30 H 1.08003 * 119.93064 * 359.97438 * 5 4 3 31 31 H 1.08007 * 120.07068 * 180.24699 * 6 5 4 32 32 H 1.08996 * 109.47584 * 210.00435 * 11 10 8 33 33 H 1.09005 * 109.46709 * 330.00378 * 11 10 8 34 34 H 0.96999 * 120.00757 * 180.02562 * 15 14 12 35 35 H 1.08997 * 109.47074 * 181.60571 * 20 10 8 36 36 H 1.09008 * 109.46993 * 13.48125 * 21 20 10 37 37 H 1.09001 * 109.47267 * 133.47802 * 21 20 10 38 38 H 1.09004 * 109.47218 * 253.48406 * 21 20 10 39 39 H 1.09008 * 109.47134 * 103.65014 * 22 20 10 40 40 H 1.08997 * 109.47075 * 223.64191 * 22 20 10 41 41 H 1.08994 * 109.47383 * 343.64938 * 22 20 10 42 42 H 1.07996 * 120.07825 * 179.97438 * 23 7 6 43 43 H 1.08001 * 119.92989 * 179.97438 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5125 1.1865 0.0006 5 6 4.1991 1.1380 1.2008 6 6 5.5739 1.0234 1.2084 7 6 6.2731 0.9678 0.0017 8 6 7.7470 0.8515 0.0023 9 8 8.2972 0.0948 -0.7735 10 7 8.4804 1.5848 0.8630 11 6 9.8159 2.0477 0.4777 12 6 9.7081 3.3964 -0.1860 13 1 8.7415 3.8623 -0.3082 14 6 10.8433 4.0355 -0.6372 15 7 12.0205 3.4684 -0.4879 16 14 10.7097 5.7075 -1.4592 17 1 10.8181 6.7743 -0.4318 18 1 11.8054 5.8612 -2.4497 19 1 9.3995 5.8164 -2.1496 20 6 7.9422 1.9190 2.1840 21 6 6.6302 2.6888 2.0203 22 6 7.6837 0.6319 2.9698 23 6 5.5748 1.0229 -1.2056 24 6 4.1996 1.1323 -1.1991 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 1.6886 1.8464 -0.8900 29 1 1.6886 1.8464 0.8900 30 1 3.6573 1.1860 2.1339 31 1 6.1083 0.9817 2.1460 32 1 10.4426 2.1289 1.3658 33 1 10.2609 1.3354 -0.2171 34 1 12.8193 3.9181 -0.8050 35 1 8.6606 2.5360 2.7235 36 1 6.2835 2.6011 0.9905 37 1 5.8793 2.2742 2.6930 38 1 6.7929 3.7395 2.2606 39 1 8.4699 0.4956 3.7125 40 1 6.7183 0.7000 3.4711 41 1 7.6790 -0.2167 2.2858 42 1 6.1099 0.9808 -2.1428 43 1 3.6581 1.1754 -2.1326 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000522590028.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:13 Heat of formation + Delta-G solvation = 24.589618 kcal Electronic energy + Delta-G solvation = -23831.305183 eV Core-core repulsion = 20459.215508 eV Total energy + Delta-G solvation = -3372.089675 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.95092 -38.58862 -37.39175 -36.39004 -33.50231 -32.04655 -31.58310 -30.25035 -27.94453 -27.07470 -26.74414 -25.59138 -23.28080 -22.87144 -21.56389 -21.47461 -18.47477 -16.99541 -16.57246 -16.47884 -16.24679 -16.01384 -15.52040 -15.08989 -14.76166 -14.58882 -14.02672 -13.95878 -13.69794 -13.51270 -13.03010 -12.58002 -12.49607 -12.25344 -12.21467 -11.92765 -11.76642 -11.60705 -11.22447 -11.17181 -11.04468 -10.86984 -10.73649 -10.57863 -10.16988 -10.10786 -9.92025 -9.65572 -9.12881 -8.70330 -8.46949 -8.09380 -7.57879 -6.07198 -4.13719 1.11298 1.60499 3.13149 3.27396 3.34337 3.38063 3.63314 3.88292 4.14602 4.40924 4.73583 4.77523 4.95991 5.01229 5.04542 5.07556 5.11155 5.18339 5.24261 5.26473 5.31589 5.39350 5.44678 5.58885 5.76807 5.77483 5.85564 5.90633 6.01499 6.14135 6.22022 6.36656 6.40393 6.54034 6.63656 6.66457 6.89734 7.03579 7.11576 7.42375 7.59664 7.91049 8.19971 8.40283 8.80069 8.98452 9.52193 11.00033 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.020658 B = 0.004151 C = 0.003875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.050300 B = 6744.264742 C = 7224.943547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.384 6.384 3 C 0.103 3.897 4 C -0.073 4.073 5 C -0.142 4.142 6 C -0.091 4.091 7 C -0.137 4.137 8 C 0.570 3.430 9 O -0.530 6.530 10 N -0.608 5.608 11 C 0.248 3.752 12 C -0.533 4.533 13 H 0.059 0.941 14 C 0.062 3.938 15 N -0.892 5.892 16 Si 0.897 3.103 17 H -0.280 1.280 18 H -0.285 1.285 19 H -0.274 1.274 20 C 0.137 3.863 21 C -0.200 4.200 22 C -0.179 4.179 23 C -0.064 4.064 24 C -0.124 4.124 25 H 0.085 0.915 26 H 0.040 0.960 27 H 0.040 0.960 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.123 0.877 31 H 0.175 0.825 32 H 0.033 0.967 33 H 0.045 0.955 34 H 0.264 0.736 35 H 0.097 0.903 36 H 0.096 0.904 37 H 0.069 0.931 38 H 0.056 0.944 39 H 0.066 0.934 40 H 0.068 0.932 41 H 0.064 0.936 42 H 0.130 0.870 43 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.029 -3.073 6.123 21.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.303 6.303 3 C 0.027 3.973 4 C -0.073 4.073 5 C -0.160 4.160 6 C -0.108 4.108 7 C -0.141 4.141 8 C 0.358 3.642 9 O -0.407 6.407 10 N -0.341 5.341 11 C 0.129 3.871 12 C -0.572 4.572 13 H 0.077 0.923 14 C -0.140 4.140 15 N -0.531 5.531 16 Si 0.725 3.275 17 H -0.206 1.206 18 H -0.211 1.211 19 H -0.199 1.199 20 C 0.032 3.968 21 C -0.256 4.256 22 C -0.237 4.237 23 C -0.083 4.083 24 C -0.142 4.142 25 H 0.104 0.896 26 H 0.059 0.941 27 H 0.059 0.941 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.141 0.859 31 H 0.192 0.808 32 H 0.051 0.949 33 H 0.063 0.937 34 H 0.074 0.926 35 H 0.115 0.885 36 H 0.114 0.886 37 H 0.088 0.912 38 H 0.075 0.925 39 H 0.085 0.915 40 H 0.087 0.913 41 H 0.083 0.917 42 H 0.148 0.852 43 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -19.373 -3.608 5.664 20.504 hybrid contribution -0.226 1.430 -0.507 1.534 sum -19.598 -2.178 5.157 20.382 Atomic orbital electron populations 1.22751 0.81216 1.02774 0.99902 1.88003 1.19384 1.27521 1.95378 1.21377 0.90196 0.84974 1.00787 1.19595 0.93521 1.00469 0.93741 1.20799 0.93775 1.04054 0.97339 1.22963 0.94744 0.92828 1.00282 1.20359 0.94813 1.04619 0.94266 1.18055 0.86008 0.79517 0.80621 1.90703 1.73389 1.34759 1.41868 1.48022 1.19512 1.53016 1.13573 1.19338 0.76558 0.94687 0.96468 1.21530 0.93484 1.03261 1.38954 0.92286 1.24945 0.95144 0.98104 0.95836 1.69937 0.97979 1.38475 1.46715 0.86508 0.77848 0.83850 0.79308 1.20580 1.21064 1.19873 1.21011 0.96170 0.95005 0.84644 1.23737 0.97043 1.00627 1.04196 1.22717 1.01340 0.98573 1.01028 1.21158 0.93613 0.95931 0.97602 1.20837 0.93817 1.02186 0.97361 0.89615 0.94109 0.94092 0.92458 0.92437 0.85928 0.80833 0.94937 0.93722 0.92642 0.88511 0.88572 0.91249 0.92492 0.91489 0.91309 0.91659 0.85228 0.85919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 11.01 101.05 1.11 1.34 16 2 O -0.38 -4.39 10.69 -35.23 -0.38 -4.77 16 3 C 0.10 1.06 6.06 36.00 0.22 1.28 16 4 C -0.07 -0.94 5.52 -104.54 -0.58 -1.52 16 5 C -0.14 -1.79 9.42 -39.64 -0.37 -2.16 16 6 C -0.09 -1.32 4.88 -39.18 -0.19 -1.51 16 7 C -0.14 -2.47 4.26 -104.97 -0.45 -2.91 16 8 C 0.57 12.56 5.87 -12.33 -0.07 12.49 16 9 O -0.53 -13.65 16.79 5.33 0.09 -13.56 16 10 N -0.61 -13.14 2.38 -168.57 -0.40 -13.54 16 11 C 0.25 6.50 5.32 -5.19 -0.03 6.47 16 12 C -0.53 -14.88 9.39 -34.44 -0.32 -15.21 16 13 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 14 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 15 N -0.89 -26.31 13.29 55.43 0.74 -25.57 16 16 Si 0.90 21.56 29.54 -169.99 -5.02 16.54 16 17 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 18 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 19 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 20 C 0.14 2.26 3.27 -67.93 -0.22 2.04 16 21 C -0.20 -2.89 7.71 37.16 0.29 -2.60 16 22 C -0.18 -2.38 8.36 37.16 0.31 -2.07 16 23 C -0.06 -1.08 9.67 -39.18 -0.38 -1.46 16 24 C -0.12 -1.73 9.68 -39.64 -0.38 -2.12 16 25 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 27 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 28 H 0.06 0.51 8.08 -51.93 -0.42 0.09 16 29 H 0.06 0.49 8.08 -51.93 -0.42 0.07 16 30 H 0.12 1.22 8.06 -52.48 -0.42 0.80 16 31 H 0.18 2.27 1.07 -53.67 -0.06 2.21 16 32 H 0.03 0.86 7.93 -51.93 -0.41 0.45 16 33 H 0.04 1.32 7.36 -51.93 -0.38 0.94 16 34 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 35 H 0.10 1.62 7.81 -51.93 -0.41 1.21 16 36 H 0.10 1.60 3.99 -61.52 -0.25 1.35 16 37 H 0.07 0.78 5.23 -51.93 -0.27 0.51 16 38 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.07 0.81 8.14 -51.92 -0.42 0.39 16 40 H 0.07 0.70 6.18 -51.93 -0.32 0.38 16 41 H 0.06 0.99 6.82 -51.93 -0.35 0.63 16 42 H 0.13 2.23 8.06 -52.49 -0.42 1.80 16 43 H 0.12 1.44 8.06 -52.49 -0.42 1.02 16 LS Contribution 343.42 15.07 5.18 5.18 Total: -1.00 -33.25 343.42 -7.18 -40.43 By element: Atomic # 1 Polarization: 7.80 SS G_CDS: -6.22 Total: 1.58 kcal Atomic # 6 Polarization: -5.13 SS G_CDS: -1.17 Total: -6.29 kcal Atomic # 7 Polarization: -39.45 SS G_CDS: 0.34 Total: -39.11 kcal Atomic # 8 Polarization: -18.04 SS G_CDS: -0.29 Total: -18.33 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -33.25 -7.18 -40.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000522590028.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.022 kcal (2) G-P(sol) polarization free energy of solvation -33.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.432 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds