Wall clock time and date at job start Tue Mar 31 2020 06:37:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42902 * 114.00072 * 2 1 4 4 C 1.50692 * 109.47254 * 179.97438 * 3 2 1 5 5 C 1.38352 * 119.85583 * 269.72691 * 4 3 2 6 6 C 1.37966 * 120.14506 * 179.72216 * 5 4 3 7 7 C 1.39572 * 119.85128 * 0.55002 * 6 5 4 8 8 C 1.47846 * 120.14412 * 179.70539 * 7 6 5 9 9 O 1.21546 * 120.00388 * 137.51811 * 8 7 6 10 10 N 1.34774 * 119.99770 * 317.51017 * 8 7 6 11 11 C 1.46501 * 120.00418 * 212.31956 * 10 8 7 12 12 C 1.50705 * 109.47376 * 89.99920 * 11 10 8 13 13 H 1.07995 * 119.99602 * 0.02562 * 12 11 10 14 14 C 1.37869 * 120.00220 * 180.02562 * 12 11 10 15 15 N 1.31516 * 120.00238 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 120.00148 * 180.02562 * 14 12 11 17 17 H 1.48504 * 109.47091 * 89.99849 * 16 14 12 18 18 H 1.48494 * 109.47460 * 209.99740 * 16 14 12 19 19 H 1.48499 * 109.46942 * 329.99875 * 16 14 12 20 20 C 1.46507 * 120.00119 * 32.31936 * 10 8 7 21 21 C 1.52996 * 109.47233 * 301.60995 * 20 10 8 22 22 C 1.52998 * 109.46605 * 61.60860 * 20 10 8 23 23 C 1.39578 * 119.71443 * 359.72092 * 7 6 5 24 24 C 1.37957 * 119.84971 * 0.02562 * 23 7 6 25 25 H 1.08999 * 109.46889 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.46815 * 299.99952 * 1 2 3 27 27 H 1.08990 * 109.47368 * 60.00093 * 1 2 3 28 28 H 1.09003 * 109.46734 * 300.00346 * 3 2 1 29 29 H 1.09002 * 109.46964 * 59.99445 * 3 2 1 30 30 H 1.08003 * 119.93064 * 359.97438 * 5 4 3 31 31 H 1.08007 * 120.07068 * 180.24699 * 6 5 4 32 32 H 1.08996 * 109.47584 * 210.00435 * 11 10 8 33 33 H 1.09005 * 109.46709 * 330.00378 * 11 10 8 34 34 H 0.96999 * 120.00757 * 180.02562 * 15 14 12 35 35 H 1.08997 * 109.47074 * 181.60571 * 20 10 8 36 36 H 1.09008 * 109.46993 * 13.48125 * 21 20 10 37 37 H 1.09001 * 109.47267 * 133.47802 * 21 20 10 38 38 H 1.09004 * 109.47218 * 253.48406 * 21 20 10 39 39 H 1.09008 * 109.47134 * 103.65014 * 22 20 10 40 40 H 1.08997 * 109.47075 * 223.64191 * 22 20 10 41 41 H 1.08994 * 109.47383 * 343.64938 * 22 20 10 42 42 H 1.07996 * 120.07825 * 179.97438 * 23 7 6 43 43 H 1.08001 * 119.92989 * 179.97438 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5125 1.1865 0.0006 5 6 4.1991 1.1380 1.2008 6 6 5.5739 1.0234 1.2084 7 6 6.2731 0.9678 0.0017 8 6 7.7470 0.8515 0.0023 9 8 8.2972 0.0948 -0.7735 10 7 8.4804 1.5848 0.8630 11 6 9.8159 2.0477 0.4777 12 6 9.7081 3.3964 -0.1860 13 1 8.7415 3.8623 -0.3082 14 6 10.8433 4.0355 -0.6372 15 7 12.0205 3.4684 -0.4879 16 14 10.7097 5.7075 -1.4592 17 1 10.8181 6.7743 -0.4318 18 1 11.8054 5.8612 -2.4497 19 1 9.3995 5.8164 -2.1496 20 6 7.9422 1.9190 2.1840 21 6 6.6302 2.6888 2.0203 22 6 7.6837 0.6319 2.9698 23 6 5.5748 1.0229 -1.2056 24 6 4.1996 1.1323 -1.1991 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 1.6886 1.8464 -0.8900 29 1 1.6886 1.8464 0.8900 30 1 3.6573 1.1860 2.1339 31 1 6.1083 0.9817 2.1460 32 1 10.4426 2.1289 1.3658 33 1 10.2609 1.3354 -0.2171 34 1 12.8193 3.9181 -0.8050 35 1 8.6606 2.5360 2.7235 36 1 6.2835 2.6011 0.9905 37 1 5.8793 2.2742 2.6930 38 1 6.7929 3.7395 2.2606 39 1 8.4699 0.4956 3.7125 40 1 6.7183 0.7000 3.4711 41 1 7.6790 -0.2167 2.2858 42 1 6.1099 0.9808 -2.1428 43 1 3.6581 1.1754 -2.1326 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000522590028.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:12 Heat of formation + Delta-G solvation = 3.116393 kcal Electronic energy + Delta-G solvation = -23832.236332 eV Core-core repulsion = 20459.215508 eV Total energy + Delta-G solvation = -3373.020824 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.30667 -39.74346 -38.49040 -37.83710 -35.42492 -33.68744 -32.83922 -31.49890 -29.46250 -28.29852 -27.90770 -26.53861 -24.97486 -24.22211 -22.91764 -22.74397 -19.89246 -18.68806 -18.24881 -17.59274 -17.27245 -17.16084 -16.78219 -16.40302 -16.20970 -16.05391 -15.38441 -15.29380 -14.86876 -14.78424 -14.30575 -14.16542 -13.76016 -13.58912 -13.49017 -13.22015 -13.06042 -12.92668 -12.74625 -12.59750 -12.41186 -12.19179 -12.12157 -12.10422 -11.88813 -11.69324 -11.24201 -10.85577 -10.67201 -10.59004 -9.86686 -9.41022 -9.21145 -8.24496 -6.41756 -0.08003 0.48984 1.35269 1.38054 1.48170 1.60925 2.22721 2.39335 2.63511 3.03905 3.21497 3.58143 3.79552 3.84099 3.95719 3.98208 4.12197 4.28520 4.30937 4.39233 4.48721 4.60028 4.61203 4.64687 4.69476 4.70507 4.84938 4.86103 4.93002 4.99095 5.02413 5.07584 5.15960 5.17554 5.29743 5.39119 5.49919 5.56296 5.59245 5.87894 5.94778 6.03132 6.26231 6.65959 6.72549 7.14488 7.32759 8.81930 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.020658 B = 0.004151 C = 0.003875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.050300 B = 6744.264742 C = 7224.943547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.412 6.412 3 C 0.102 3.898 4 C -0.066 4.066 5 C -0.132 4.132 6 C -0.082 4.082 7 C -0.166 4.166 8 C 0.563 3.437 9 O -0.589 6.589 10 N -0.613 5.613 11 C 0.264 3.736 12 C -0.547 4.547 13 H 0.057 0.943 14 C 0.009 3.991 15 N -0.928 5.928 16 Si 0.970 3.030 17 H -0.262 1.262 18 H -0.281 1.281 19 H -0.271 1.271 20 C 0.124 3.876 21 C -0.195 4.195 22 C -0.173 4.173 23 C -0.086 4.086 24 C -0.125 4.125 25 H 0.092 0.908 26 H 0.056 0.944 27 H 0.050 0.950 28 H 0.070 0.930 29 H 0.084 0.916 30 H 0.165 0.835 31 H 0.190 0.810 32 H 0.023 0.977 33 H -0.005 1.005 34 H 0.268 0.732 35 H 0.090 0.910 36 H 0.077 0.923 37 H 0.114 0.886 38 H 0.058 0.942 39 H 0.077 0.923 40 H 0.114 0.886 41 H 0.042 0.958 42 H 0.107 0.893 43 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.896 -1.531 8.048 25.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.332 6.332 3 C 0.027 3.973 4 C -0.067 4.067 5 C -0.150 4.150 6 C -0.098 4.098 7 C -0.169 4.169 8 C 0.354 3.646 9 O -0.471 6.471 10 N -0.345 5.345 11 C 0.143 3.857 12 C -0.586 4.586 13 H 0.075 0.925 14 C -0.191 4.191 15 N -0.567 5.567 16 Si 0.794 3.206 17 H -0.187 1.187 18 H -0.206 1.206 19 H -0.195 1.195 20 C 0.021 3.979 21 C -0.251 4.251 22 C -0.230 4.230 23 C -0.105 4.105 24 C -0.143 4.143 25 H 0.110 0.890 26 H 0.075 0.925 27 H 0.069 0.931 28 H 0.089 0.911 29 H 0.102 0.898 30 H 0.183 0.817 31 H 0.206 0.794 32 H 0.041 0.959 33 H 0.013 0.987 34 H 0.077 0.923 35 H 0.108 0.892 36 H 0.095 0.905 37 H 0.132 0.868 38 H 0.077 0.923 39 H 0.096 0.904 40 H 0.132 0.868 41 H 0.062 0.938 42 H 0.125 0.875 43 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -23.280 -2.054 7.635 24.586 hybrid contribution 0.912 0.890 -1.089 1.676 sum -22.367 -1.164 6.546 23.334 Atomic orbital electron populations 1.22943 0.79257 1.03738 1.01183 1.87949 1.21540 1.28053 1.95672 1.21456 0.87978 0.85103 1.02808 1.20037 0.95472 0.97959 0.93192 1.21251 0.92761 1.01921 0.99032 1.23078 0.95641 0.91985 0.99146 1.20056 0.91890 1.08518 0.96420 1.18820 0.88121 0.78280 0.79395 1.90647 1.74988 1.37375 1.44040 1.48019 1.18028 1.52725 1.15744 1.18810 0.78992 0.93153 0.94778 1.21748 0.93575 1.03794 1.39439 0.92465 1.25897 0.94622 1.02305 0.96240 1.70067 0.98805 1.40304 1.47532 0.85380 0.77823 0.78942 0.78479 1.18709 1.20629 1.19544 1.21410 0.97166 0.97155 0.82178 1.23698 0.96584 1.00697 1.04103 1.22674 1.04307 0.95604 1.00448 1.21146 0.95122 0.97683 0.96565 1.21033 0.92370 1.01690 0.99226 0.88957 0.92492 0.93101 0.91141 0.89821 0.81746 0.79436 0.95942 0.98705 0.92298 0.89187 0.90473 0.86767 0.92299 0.90377 0.86785 0.93847 0.87502 0.84011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 11.01 113.37 1.25 1.52 16 2 O -0.41 -7.88 10.69 -148.98 -1.59 -9.47 16 3 C 0.10 1.65 6.06 71.23 0.43 2.08 16 4 C -0.07 -1.48 5.52 -19.81 -0.11 -1.59 16 5 C -0.13 -2.76 9.42 22.23 0.21 -2.55 16 6 C -0.08 -2.17 4.88 22.53 0.11 -2.06 16 7 C -0.17 -6.08 4.26 -20.09 -0.09 -6.17 16 8 C 0.56 26.47 5.87 86.79 0.51 26.98 16 9 O -0.59 -33.20 16.79 -3.86 -0.06 -33.27 16 10 N -0.61 -27.92 2.38 -805.53 -1.92 -29.84 16 11 C 0.26 14.79 5.32 85.63 0.46 15.25 16 12 C -0.55 -31.83 9.39 25.60 0.24 -31.59 16 13 H 0.06 3.27 7.81 -2.91 -0.02 3.25 16 14 C 0.01 0.50 5.46 84.65 0.46 0.96 16 15 N -0.93 -56.64 13.29 21.44 0.28 -56.36 16 16 Si 0.97 44.83 29.54 68.60 2.03 46.85 16 17 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 18 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 19 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 20 C 0.12 4.05 3.27 44.99 0.15 4.20 16 21 C -0.19 -5.18 7.71 71.98 0.56 -4.62 16 22 C -0.17 -4.29 8.36 71.98 0.60 -3.69 16 23 C -0.09 -3.01 9.67 22.53 0.22 -2.79 16 24 C -0.13 -3.35 9.68 22.23 0.22 -3.13 16 25 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 26 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 27 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 28 H 0.07 0.96 8.08 -2.39 -0.02 0.94 16 29 H 0.08 0.94 8.08 -2.39 -0.02 0.92 16 30 H 0.17 2.13 8.06 -2.91 -0.02 2.10 16 31 H 0.19 4.27 1.07 -4.02 0.00 4.26 16 32 H 0.02 1.28 7.93 -2.39 -0.02 1.26 16 33 H -0.01 -0.34 7.36 -2.38 -0.02 -0.36 16 34 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 35 H 0.09 3.02 7.81 -2.39 -0.02 3.00 16 36 H 0.08 2.46 3.99 -11.40 -0.05 2.42 16 37 H 0.11 1.98 5.23 -2.39 -0.01 1.97 16 38 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 39 H 0.08 1.77 8.14 -2.38 -0.02 1.75 16 40 H 0.11 1.78 6.18 -2.39 -0.01 1.77 16 41 H 0.04 1.29 6.82 -2.39 -0.02 1.28 16 42 H 0.11 4.05 8.06 -2.91 -0.02 4.03 16 43 H 0.14 3.12 8.06 -2.91 -0.02 3.10 16 Total: -1.00 -78.95 343.42 4.92 -74.03 By element: Atomic # 1 Polarization: 14.28 SS G_CDS: 0.97 Total: 15.25 kcal Atomic # 6 Polarization: -12.40 SS G_CDS: 5.21 Total: -7.19 kcal Atomic # 7 Polarization: -84.57 SS G_CDS: -1.63 Total: -86.20 kcal Atomic # 8 Polarization: -41.08 SS G_CDS: -1.66 Total: -42.74 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.85 kcal Total: -78.95 4.92 -74.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000522590028.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.144 kcal (2) G-P(sol) polarization free energy of solvation -78.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.028 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds