Wall clock time and date at job start Tue Mar 31 2020 06:37:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52992 * 109.47387 * 2 1 4 4 N 1.46501 * 109.47011 * 120.00306 * 2 1 3 5 5 C 1.46492 * 120.00191 * 302.01190 * 4 2 1 6 6 C 1.50697 * 109.47309 * 89.99922 * 5 4 2 7 7 H 1.08009 * 120.00068 * 0.02562 * 6 5 4 8 8 C 1.37873 * 120.00377 * 179.97438 * 6 5 4 9 9 N 1.31514 * 120.00367 * 180.02562 * 8 6 5 10 10 Si 1.86805 * 119.99741 * 0.02562 * 8 6 5 11 11 H 1.48497 * 109.47142 * 89.99838 * 10 8 6 12 12 H 1.48509 * 109.46914 * 209.99562 * 10 8 6 13 13 H 1.48495 * 109.46947 * 329.99415 * 10 8 6 14 14 C 1.34775 * 119.99676 * 122.01310 * 4 2 1 15 15 O 1.21285 * 120.00017 * 184.72790 * 14 4 2 16 16 C 1.50697 * 120.00628 * 4.72816 * 14 4 2 17 17 H 1.09005 * 109.46816 * 45.55935 * 16 14 4 18 18 O 1.42901 * 109.47639 * 165.55756 * 16 14 4 19 19 C 1.53005 * 109.47163 * 285.56098 * 16 14 4 20 20 C 1.50701 * 109.46867 * 174.16743 * 19 16 14 21 21 C 1.38236 * 120.00193 * 269.72378 * 20 19 16 22 22 C 1.38234 * 119.99590 * 179.76926 * 21 20 19 23 23 C 1.38236 * 120.00242 * 0.51262 * 22 21 20 24 24 C 1.38227 * 119.99937 * 359.73881 * 23 22 21 25 25 C 1.38236 * 120.00099 * 0.02562 * 24 23 22 26 26 H 1.08995 * 109.47030 * 59.99418 * 1 2 3 27 27 H 1.08996 * 109.47518 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.46499 * 299.99734 * 1 2 3 29 29 H 1.09003 * 109.46580 * 239.99780 * 2 1 3 30 30 H 1.09005 * 109.47071 * 59.99924 * 3 2 1 31 31 H 1.09000 * 109.47083 * 180.02562 * 3 2 1 32 32 H 1.09004 * 109.46955 * 300.00375 * 3 2 1 33 33 H 1.09002 * 109.47353 * 210.00136 * 5 4 2 34 34 H 1.09002 * 109.47071 * 330.00068 * 5 4 2 35 35 H 0.97000 * 120.00048 * 180.02562 * 9 8 6 36 36 H 0.96696 * 113.99437 * 60.00302 * 18 16 14 37 37 H 1.08990 * 109.46807 * 294.17123 * 19 16 14 38 38 H 1.09003 * 109.46857 * 54.17428 * 19 16 14 39 39 H 1.08000 * 119.99915 * 0.02562 * 21 20 19 40 40 H 1.08008 * 119.99562 * 180.22683 * 22 21 20 41 41 H 1.07996 * 119.99533 * 179.72358 * 23 22 21 42 42 H 1.08002 * 120.00361 * 179.97438 * 24 23 22 43 43 H 1.08002 * 120.00083 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 1.6285 -0.2165 2.5262 6 6 0.3589 -0.9069 2.9535 7 1 -0.1104 -1.6273 2.2998 8 6 -0.2030 -0.6199 4.1794 9 7 -1.3107 -1.2228 4.5525 10 14 0.6091 0.6255 5.3104 11 1 0.0698 1.9792 5.0245 12 1 0.3264 0.2685 6.7240 13 1 2.0763 0.6186 5.0820 14 6 2.8263 -1.7623 1.0728 15 8 3.1613 -2.3858 2.0577 16 6 3.3137 -2.1859 -0.2888 17 1 3.6543 -1.3103 -0.8414 18 8 4.3961 -3.1073 -0.1421 19 6 2.1713 -2.8586 -1.0529 20 6 2.6150 -3.1531 -2.4627 21 6 2.4150 -2.2170 -3.4600 22 6 2.8263 -2.4854 -4.7522 23 6 3.4279 -3.6940 -5.0492 24 6 3.6231 -4.6321 -4.0529 25 6 3.2163 -4.3618 -2.7597 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3632 0.5138 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 3.1301 1.4423 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 2.4219 -0.4412 3.2391 34 1 1.4632 0.8604 2.4941 35 1 -1.7062 -1.0205 5.4148 36 1 4.1645 -3.9122 0.3412 37 1 1.9001 -3.7895 -0.5553 38 1 1.3080 -2.1935 -1.0751 39 1 1.9412 -1.2744 -3.2288 40 1 2.6734 -1.7525 -5.5307 41 1 3.7452 -3.9053 -6.0596 42 1 4.0928 -5.5766 -4.2849 43 1 3.3685 -5.0950 -1.9814 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000527240194.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:46 Heat of formation + Delta-G solvation = -64.392158 kcal Electronic energy + Delta-G solvation = -24051.749394 eV Core-core repulsion = 20675.801180 eV Total energy + Delta-G solvation = -3375.948214 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.12506 -39.01081 -36.75209 -35.83584 -33.01201 -32.64818 -31.08908 -30.94112 -29.48566 -27.59092 -26.80203 -24.52147 -22.64167 -22.29043 -21.47881 -21.01566 -18.68796 -17.47026 -16.88485 -16.77593 -16.27616 -15.50037 -15.12811 -15.06299 -14.64703 -14.06265 -13.93829 -13.70134 -13.63590 -13.44064 -13.00809 -12.66781 -12.61019 -12.48768 -12.01091 -11.91203 -11.71735 -11.65069 -11.40897 -11.15924 -11.05172 -11.01724 -10.92845 -10.59187 -10.49884 -10.36049 -10.10282 -9.48715 -9.02832 -8.96392 -8.60810 -8.58322 -7.78158 -6.09388 -4.06936 1.28304 1.35346 3.15656 3.24981 3.33810 3.38369 3.65747 3.76978 4.38787 4.42235 4.66244 4.76616 4.89803 4.96031 5.04767 5.10827 5.12780 5.15060 5.24574 5.40945 5.45820 5.47184 5.51554 5.70786 5.82618 5.88877 5.99095 6.02587 6.03872 6.17498 6.25715 6.39269 6.44083 6.45603 6.58534 6.69249 6.91827 6.95273 6.96895 7.29960 7.60369 7.66266 8.19222 8.45469 8.84999 8.95039 9.51206 11.03712 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.024281 B = 0.004289 C = 0.004083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.887090 B = 6526.932080 C = 6855.845421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.126 3.874 3 C -0.165 4.165 4 N -0.583 5.583 5 C 0.215 3.785 6 C -0.520 4.520 7 H 0.077 0.923 8 C 0.072 3.928 9 N -0.897 5.897 10 Si 0.870 3.130 11 H -0.276 1.276 12 H -0.284 1.284 13 H -0.265 1.265 14 C 0.479 3.521 15 O -0.532 6.532 16 C 0.100 3.900 17 H 0.115 0.885 18 O -0.539 6.539 19 C -0.117 4.117 20 C -0.069 4.069 21 C -0.118 4.118 22 C -0.120 4.120 23 C -0.128 4.128 24 C -0.121 4.121 25 C -0.103 4.103 26 H 0.051 0.949 27 H 0.059 0.941 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.066 0.934 31 H 0.053 0.947 32 H 0.062 0.938 33 H 0.038 0.962 34 H 0.027 0.973 35 H 0.264 0.736 36 H 0.381 0.619 37 H 0.084 0.916 38 H 0.095 0.905 39 H 0.122 0.878 40 H 0.120 0.880 41 H 0.118 0.882 42 H 0.119 0.881 43 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.263 -0.225 -18.473 19.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.022 3.978 3 C -0.223 4.223 4 N -0.316 5.316 5 C 0.094 3.906 6 C -0.559 4.559 7 H 0.095 0.905 8 C -0.130 4.130 9 N -0.536 5.536 10 Si 0.697 3.303 11 H -0.201 1.201 12 H -0.210 1.210 13 H -0.189 1.189 14 C 0.265 3.735 15 O -0.409 6.409 16 C 0.037 3.963 17 H 0.133 0.867 18 O -0.344 6.344 19 C -0.155 4.155 20 C -0.069 4.069 21 C -0.136 4.136 22 C -0.138 4.138 23 C -0.146 4.146 24 C -0.139 4.139 25 C -0.121 4.121 26 H 0.070 0.930 27 H 0.078 0.922 28 H 0.101 0.899 29 H 0.098 0.902 30 H 0.085 0.915 31 H 0.072 0.928 32 H 0.081 0.919 33 H 0.056 0.944 34 H 0.045 0.955 35 H 0.074 0.926 36 H 0.230 0.770 37 H 0.103 0.897 38 H 0.113 0.887 39 H 0.140 0.860 40 H 0.138 0.862 41 H 0.136 0.864 42 H 0.137 0.863 43 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 7.631 -0.108 -18.106 19.648 hybrid contribution -0.147 0.285 1.009 1.058 sum 7.484 0.177 -17.097 18.664 Atomic orbital electron populations 1.22144 0.93899 1.02958 1.02493 1.21205 0.95732 0.93083 0.87821 1.22202 1.01007 0.96504 1.02605 1.48056 1.46534 1.28925 1.08044 1.19642 0.96955 0.94529 0.79448 1.21303 1.06683 1.24780 1.03129 0.90531 1.24840 0.94702 0.96056 0.97400 1.69887 1.19533 1.42662 1.21526 0.86932 0.80698 0.81815 0.80831 1.20150 1.20999 1.18931 1.21187 0.79614 0.81271 0.91410 1.90689 1.57753 1.52974 1.39510 1.21826 0.88042 0.93502 0.92930 0.86700 1.86537 1.35910 1.33291 1.78693 1.21421 0.98490 1.03142 0.92408 1.19716 0.98182 0.94397 0.94622 1.21078 1.00491 0.99189 0.92889 1.21099 0.99046 0.97173 0.96527 1.21109 1.00056 0.94303 0.99137 1.21125 1.00157 0.99371 0.93204 1.21049 0.97840 0.96721 0.96497 0.93038 0.92232 0.89938 0.90223 0.91537 0.92754 0.91854 0.94442 0.95517 0.92627 0.77013 0.89692 0.88651 0.86001 0.86221 0.86433 0.86276 0.86096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.47 8.23 37.16 0.31 -2.16 16 2 C 0.13 1.89 2.35 -67.93 -0.16 1.73 16 3 C -0.17 -2.17 9.21 37.15 0.34 -1.82 16 4 N -0.58 -11.44 2.39 -167.48 -0.40 -11.84 16 5 C 0.21 5.08 3.57 -5.20 -0.02 5.06 16 6 C -0.52 -14.32 8.38 -34.44 -0.29 -14.60 16 7 H 0.08 2.30 7.86 -52.48 -0.41 1.88 16 8 C 0.07 2.05 5.47 -17.82 -0.10 1.96 16 9 N -0.90 -27.14 13.96 55.43 0.77 -26.36 16 10 Si 0.87 21.27 27.47 -169.99 -4.67 16.60 16 11 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 12 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 13 H -0.26 -6.37 6.54 56.52 0.37 -6.00 16 14 C 0.48 9.51 6.99 -10.99 -0.08 9.44 16 15 O -0.53 -12.92 15.93 -13.93 -0.22 -13.14 16 16 C 0.10 1.49 2.50 -27.88 -0.07 1.43 16 17 H 0.12 1.57 7.25 -51.93 -0.38 1.19 16 18 O -0.54 -8.22 12.61 -54.72 -0.69 -8.91 16 19 C -0.12 -1.52 4.56 -27.88 -0.13 -1.65 16 20 C -0.07 -0.82 4.98 -104.62 -0.52 -1.34 16 21 C -0.12 -1.27 9.70 -39.58 -0.38 -1.65 16 22 C -0.12 -1.17 10.05 -39.58 -0.40 -1.57 16 23 C -0.13 -1.22 10.05 -39.59 -0.40 -1.62 16 24 C -0.12 -1.22 10.05 -39.59 -0.40 -1.62 16 25 C -0.10 -1.17 9.43 -39.58 -0.37 -1.54 16 26 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 27 H 0.06 1.01 7.82 -51.93 -0.41 0.61 16 28 H 0.08 1.55 6.93 -51.93 -0.36 1.19 16 29 H 0.08 0.99 4.38 -51.93 -0.23 0.76 16 30 H 0.07 0.97 6.74 -51.93 -0.35 0.62 16 31 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.04 0.98 6.55 -51.93 -0.34 0.64 16 34 H 0.03 0.60 5.96 -51.93 -0.31 0.29 16 35 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 36 H 0.38 5.15 8.69 45.56 0.40 5.55 16 37 H 0.08 1.14 8.08 -51.93 -0.42 0.72 16 38 H 0.10 1.23 5.54 -51.93 -0.29 0.95 16 39 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 40 H 0.12 0.90 8.06 -52.48 -0.42 0.47 16 41 H 0.12 0.86 8.06 -52.49 -0.42 0.43 16 42 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 43 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 LS Contribution 347.43 15.07 5.24 5.24 Total: -1.00 -33.50 347.43 -8.27 -41.78 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: -5.64 Total: 6.60 kcal Atomic # 6 Polarization: -7.30 SS G_CDS: -2.66 Total: -9.97 kcal Atomic # 7 Polarization: -38.57 SS G_CDS: 0.37 Total: -38.20 kcal Atomic # 8 Polarization: -21.14 SS G_CDS: -0.91 Total: -22.05 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -4.67 Total: 16.60 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -33.50 -8.27 -41.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000527240194.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.616 kcal (2) G-P(sol) polarization free energy of solvation -33.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds