Wall clock time and date at job start Tue Mar 31 2020 06:37:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52992 * 109.47387 * 2 1 4 4 N 1.46501 * 109.47011 * 120.00306 * 2 1 3 5 5 C 1.46492 * 120.00191 * 302.01190 * 4 2 1 6 6 C 1.50697 * 109.47309 * 89.99922 * 5 4 2 7 7 H 1.08009 * 120.00068 * 0.02562 * 6 5 4 8 8 C 1.37873 * 120.00377 * 179.97438 * 6 5 4 9 9 N 1.31514 * 120.00367 * 180.02562 * 8 6 5 10 10 Si 1.86805 * 119.99741 * 0.02562 * 8 6 5 11 11 H 1.48497 * 109.47142 * 89.99838 * 10 8 6 12 12 H 1.48509 * 109.46914 * 209.99562 * 10 8 6 13 13 H 1.48495 * 109.46947 * 329.99415 * 10 8 6 14 14 C 1.34775 * 119.99676 * 122.01310 * 4 2 1 15 15 O 1.21285 * 120.00017 * 184.72790 * 14 4 2 16 16 C 1.50697 * 120.00628 * 4.72816 * 14 4 2 17 17 H 1.09005 * 109.46816 * 45.55935 * 16 14 4 18 18 O 1.42901 * 109.47639 * 165.55756 * 16 14 4 19 19 C 1.53005 * 109.47163 * 285.56098 * 16 14 4 20 20 C 1.50701 * 109.46867 * 174.16743 * 19 16 14 21 21 C 1.38236 * 120.00193 * 269.72378 * 20 19 16 22 22 C 1.38234 * 119.99590 * 179.76926 * 21 20 19 23 23 C 1.38236 * 120.00242 * 0.51262 * 22 21 20 24 24 C 1.38227 * 119.99937 * 359.73881 * 23 22 21 25 25 C 1.38236 * 120.00099 * 0.02562 * 24 23 22 26 26 H 1.08995 * 109.47030 * 59.99418 * 1 2 3 27 27 H 1.08996 * 109.47518 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.46499 * 299.99734 * 1 2 3 29 29 H 1.09003 * 109.46580 * 239.99780 * 2 1 3 30 30 H 1.09005 * 109.47071 * 59.99924 * 3 2 1 31 31 H 1.09000 * 109.47083 * 180.02562 * 3 2 1 32 32 H 1.09004 * 109.46955 * 300.00375 * 3 2 1 33 33 H 1.09002 * 109.47353 * 210.00136 * 5 4 2 34 34 H 1.09002 * 109.47071 * 330.00068 * 5 4 2 35 35 H 0.97000 * 120.00048 * 180.02562 * 9 8 6 36 36 H 0.96696 * 113.99437 * 60.00302 * 18 16 14 37 37 H 1.08990 * 109.46807 * 294.17123 * 19 16 14 38 38 H 1.09003 * 109.46857 * 54.17428 * 19 16 14 39 39 H 1.08000 * 119.99915 * 0.02562 * 21 20 19 40 40 H 1.08008 * 119.99562 * 180.22683 * 22 21 20 41 41 H 1.07996 * 119.99533 * 179.72358 * 23 22 21 42 42 H 1.08002 * 120.00361 * 179.97438 * 24 23 22 43 43 H 1.08002 * 120.00083 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 1.6285 -0.2165 2.5262 6 6 0.3589 -0.9069 2.9535 7 1 -0.1104 -1.6273 2.2998 8 6 -0.2030 -0.6199 4.1794 9 7 -1.3107 -1.2228 4.5525 10 14 0.6091 0.6255 5.3104 11 1 0.0698 1.9792 5.0245 12 1 0.3264 0.2685 6.7240 13 1 2.0763 0.6186 5.0820 14 6 2.8263 -1.7623 1.0728 15 8 3.1613 -2.3858 2.0577 16 6 3.3137 -2.1859 -0.2888 17 1 3.6543 -1.3103 -0.8414 18 8 4.3961 -3.1073 -0.1421 19 6 2.1713 -2.8586 -1.0529 20 6 2.6150 -3.1531 -2.4627 21 6 2.4150 -2.2170 -3.4600 22 6 2.8263 -2.4854 -4.7522 23 6 3.4279 -3.6940 -5.0492 24 6 3.6231 -4.6321 -4.0529 25 6 3.2163 -4.3618 -2.7597 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3632 0.5138 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 3.1301 1.4423 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 2.4219 -0.4412 3.2391 34 1 1.4632 0.8604 2.4941 35 1 -1.7062 -1.0205 5.4148 36 1 4.1645 -3.9122 0.3412 37 1 1.9001 -3.7895 -0.5553 38 1 1.3080 -2.1935 -1.0751 39 1 1.9412 -1.2744 -3.2288 40 1 2.6734 -1.7525 -5.5307 41 1 3.7452 -3.9053 -6.0596 42 1 4.0928 -5.5766 -4.2849 43 1 3.3685 -5.0950 -1.9814 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000527240194.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:45 Heat of formation + Delta-G solvation = -86.125567 kcal Electronic energy + Delta-G solvation = -24052.691825 eV Core-core repulsion = 20675.801180 eV Total energy + Delta-G solvation = -3376.890645 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.48002 -39.97100 -38.09707 -37.28280 -34.90103 -33.84058 -32.63568 -31.69131 -30.90578 -29.10971 -27.97537 -25.83253 -24.09516 -23.40020 -22.73592 -21.96862 -20.15164 -19.08719 -18.79254 -17.78490 -17.44753 -16.68220 -16.60155 -16.11010 -15.98039 -15.44667 -15.29116 -15.22062 -14.87995 -14.54602 -14.17182 -13.98915 -13.82729 -13.61416 -13.55549 -13.34454 -13.07089 -12.87146 -12.81785 -12.63157 -12.43406 -12.20755 -12.00492 -11.96738 -11.86513 -11.84584 -11.65012 -11.48127 -10.78949 -10.46258 -9.72712 -9.53756 -9.45145 -8.30582 -6.32654 0.48694 0.59535 1.29883 1.34756 1.44442 1.63248 2.17878 2.31659 2.93814 3.03137 3.24383 3.47785 3.80614 3.90936 3.93586 4.02167 4.17231 4.23118 4.25786 4.32671 4.40898 4.51367 4.70351 4.70933 4.81688 4.86851 4.87360 4.90592 4.92018 5.02773 5.07292 5.19587 5.25356 5.38708 5.47711 5.59374 5.64439 5.65841 5.70589 5.77277 6.20153 6.26441 6.45956 6.66644 6.69488 7.21510 7.34830 8.85859 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.024281 B = 0.004289 C = 0.004083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.887090 B = 6526.932080 C = 6855.845421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.119 3.881 3 C -0.161 4.161 4 N -0.586 5.586 5 C 0.224 3.776 6 C -0.516 4.516 7 H 0.036 0.964 8 C 0.012 3.988 9 N -0.945 5.945 10 Si 0.937 3.063 11 H -0.252 1.252 12 H -0.285 1.285 13 H -0.260 1.260 14 C 0.469 3.531 15 O -0.588 6.588 16 C 0.117 3.883 17 H 0.138 0.862 18 O -0.544 6.544 19 C -0.106 4.106 20 C -0.085 4.085 21 C -0.126 4.126 22 C -0.124 4.124 23 C -0.130 4.130 24 C -0.130 4.130 25 C -0.120 4.120 26 H 0.094 0.906 27 H 0.035 0.965 28 H 0.046 0.954 29 H 0.113 0.887 30 H 0.047 0.953 31 H 0.062 0.938 32 H 0.100 0.900 33 H 0.012 0.988 34 H 0.048 0.952 35 H 0.266 0.734 36 H 0.387 0.613 37 H 0.071 0.929 38 H 0.096 0.904 39 H 0.139 0.861 40 H 0.145 0.855 41 H 0.142 0.858 42 H 0.136 0.864 43 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.478 1.658 -21.305 22.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.017 3.983 3 C -0.219 4.219 4 N -0.318 5.318 5 C 0.102 3.898 6 C -0.555 4.555 7 H 0.055 0.945 8 C -0.185 4.185 9 N -0.586 5.586 10 Si 0.760 3.240 11 H -0.176 1.176 12 H -0.211 1.211 13 H -0.184 1.184 14 C 0.257 3.743 15 O -0.469 6.469 16 C 0.054 3.946 17 H 0.156 0.844 18 O -0.350 6.350 19 C -0.144 4.144 20 C -0.085 4.085 21 C -0.144 4.144 22 C -0.142 4.142 23 C -0.148 4.148 24 C -0.147 4.147 25 C -0.139 4.139 26 H 0.112 0.888 27 H 0.055 0.945 28 H 0.065 0.935 29 H 0.130 0.870 30 H 0.067 0.933 31 H 0.081 0.919 32 H 0.119 0.881 33 H 0.030 0.970 34 H 0.065 0.935 35 H 0.075 0.925 36 H 0.236 0.764 37 H 0.090 0.910 38 H 0.114 0.886 39 H 0.157 0.843 40 H 0.163 0.837 41 H 0.160 0.840 42 H 0.154 0.846 43 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 8.844 1.797 -20.991 22.848 hybrid contribution -0.559 -0.398 1.770 1.899 sum 8.285 1.400 -19.220 20.977 Atomic orbital electron populations 1.22081 0.94563 1.01537 1.02773 1.21599 0.95169 0.94657 0.86878 1.22194 1.01540 0.94622 1.03567 1.48174 1.46310 1.29230 1.08061 1.19272 0.93960 0.95147 0.81416 1.21467 1.07720 1.23739 1.02552 0.94532 1.25733 0.95257 0.98347 0.99208 1.70037 1.21391 1.44843 1.22287 0.85872 0.79794 0.80084 0.78221 1.17629 1.21059 1.18395 1.22222 0.78789 0.80411 0.92894 1.90650 1.59803 1.54631 1.41827 1.21816 0.88541 0.94337 0.89892 0.84422 1.86510 1.36249 1.33605 1.78618 1.21273 0.97602 1.02306 0.93245 1.19616 0.99661 0.95343 0.93878 1.21332 1.00416 0.99558 0.93045 1.21447 0.98260 0.97753 0.96723 1.21486 0.99148 0.94006 1.00123 1.21396 1.00074 1.00440 0.92834 1.21206 0.98432 0.96852 0.97360 0.88774 0.94543 0.93504 0.86966 0.93340 0.91931 0.88124 0.97012 0.93457 0.92512 0.76385 0.91015 0.88565 0.84301 0.83725 0.84043 0.84618 0.86237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.63 8.23 71.98 0.59 -4.04 16 2 C 0.12 3.34 2.35 44.99 0.11 3.45 16 3 C -0.16 -3.70 9.21 71.98 0.66 -3.04 16 4 N -0.59 -23.03 2.39 -802.16 -1.91 -24.95 16 5 C 0.22 10.79 3.57 85.63 0.31 11.09 16 6 C -0.52 -29.53 8.38 25.60 0.21 -29.32 16 7 H 0.04 2.32 7.86 -2.91 -0.02 2.30 16 8 C 0.01 0.71 5.47 84.65 0.46 1.18 16 9 N -0.94 -59.22 13.96 21.45 0.30 -58.92 16 10 Si 0.94 44.45 27.47 68.60 1.88 46.34 16 11 H -0.25 -10.95 7.11 99.48 0.71 -10.24 16 12 H -0.28 -13.48 7.11 99.48 0.71 -12.77 16 13 H -0.26 -12.03 6.54 99.48 0.65 -11.38 16 14 C 0.47 18.85 6.99 87.66 0.61 19.46 16 15 O -0.59 -29.70 15.93 15.59 0.25 -29.45 16 16 C 0.12 3.39 2.50 29.85 0.07 3.46 16 17 H 0.14 3.37 7.25 -2.38 -0.02 3.35 16 18 O -0.54 -16.35 12.61 -130.35 -1.64 -17.99 16 19 C -0.11 -2.70 4.56 29.85 0.14 -2.57 16 20 C -0.08 -1.87 4.98 -19.87 -0.10 -1.97 16 21 C -0.13 -2.30 9.70 22.27 0.22 -2.09 16 22 C -0.12 -1.96 10.05 22.27 0.22 -1.74 16 23 C -0.13 -2.06 10.05 22.27 0.22 -1.84 16 24 C -0.13 -2.34 10.05 22.27 0.22 -2.12 16 25 C -0.12 -2.59 9.43 22.27 0.21 -2.38 16 26 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 27 H 0.04 1.25 7.82 -2.39 -0.02 1.23 16 28 H 0.05 1.76 6.93 -2.39 -0.02 1.74 16 29 H 0.11 2.43 4.38 -2.39 -0.01 2.42 16 30 H 0.05 1.29 6.74 -2.38 -0.02 1.28 16 31 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.01 0.63 6.55 -2.39 -0.02 0.62 16 34 H 0.05 2.09 5.96 -2.39 -0.01 2.08 16 35 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 36 H 0.39 10.71 8.69 -74.06 -0.64 10.07 16 37 H 0.07 1.99 8.08 -2.39 -0.02 1.97 16 38 H 0.10 2.39 5.54 -2.39 -0.01 2.38 16 39 H 0.14 1.97 8.06 -2.91 -0.02 1.94 16 40 H 0.14 1.52 8.06 -2.91 -0.02 1.50 16 41 H 0.14 1.51 8.06 -2.91 -0.02 1.49 16 42 H 0.14 1.89 8.06 -2.91 -0.02 1.87 16 43 H 0.12 2.47 8.06 -2.91 -0.02 2.44 16 Total: -1.00 -76.72 347.43 3.35 -73.37 By element: Atomic # 1 Polarization: 23.74 SS G_CDS: 0.31 Total: 24.05 kcal Atomic # 6 Polarization: -16.62 SS G_CDS: 4.17 Total: -12.45 kcal Atomic # 7 Polarization: -82.26 SS G_CDS: -1.61 Total: -83.87 kcal Atomic # 8 Polarization: -46.04 SS G_CDS: -1.40 Total: -47.44 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 1.88 Total: 46.34 kcal Total: -76.72 3.35 -73.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000527240194.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.752 kcal (2) G-P(sol) polarization free energy of solvation -76.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds